View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7415_high_8 (Length: 525)
Name: NF7415_high_8
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 128 - 298
Target Start/End: Original strand, 8533208 - 8533378
Alignment:
| Q |
128 |
tgcgtggctgaattgattatgtaaaccaagttaggcttgtttggcaagaaatggcttcacatacattttttgtgtgactaaaaatactccatgttcatat |
227 |
Q |
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| T |
8533208 |
tgcgtggctgaattgattatgtaaaccaagttaggcttgtttggcaagaaatgacttcacatacattttttgtgtgactaaaaatactccatgttcatat |
8533307 |
T |
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| Q |
228 |
tacagttgaaaataaggataaaacattatgtactaaataagatttttaagtattaattgcgtgtataattt |
298 |
Q |
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| T |
8533308 |
tacagttgaaaataaggataaaacattatgtactaaataagatttttaagtattaattgcgtgtataattt |
8533378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 308 - 525
Target Start/End: Original strand, 8533424 - 8533638
Alignment:
| Q |
308 |
ttcattcaatttgaatttacagtttatgatatatcctttccctttnnnnnnngtttatgatatatgaaaagacacgtagtttttaaaaaagtaataataa |
407 |
Q |
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| T |
8533424 |
ttcattcaatttgaatttacagtttatggtatatcctttcccttaaaaaaaagtttatgatatatgaaaagacacgtggtttttagaaaa------aaaa |
8533517 |
T |
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| Q |
408 |
taataaacaac-aagtgaagtggttaagaaagcgttgaaaaagagtgttgttagcac-nnnnnnnatatgatgtcctcgatattttatac-taagaggtg |
504 |
Q |
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| T |
8533518 |
taataaccaactaagtgaagtggttaagaaagcgttgaaaaagagtgttgttagcacttctttttatatgatgtcctccatattttattcttgagaggtg |
8533617 |
T |
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| Q |
505 |
aaatgaaatagtgtattttat |
525 |
Q |
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| T |
8533618 |
aaatgaaatagtgtattttat |
8533638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 8533134 - 8533204
Alignment:
| Q |
12 |
gagaagaataaaagatggtcgatgtatttatagaagatcgggttcaaggagtttggcctttacatagatta |
82 |
Q |
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| T |
8533134 |
gagaagaataaaagatggtcgatgtatttatagaagatcgggttcaaggagttaggcatttacatagatta |
8533204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 8541483 - 8541557
Alignment:
| Q |
105 |
tagttagtggggtggtctaaatctgcgtggctgaattgattatgtaaaccaagttaggcttgtttggcaagaaat |
179 |
Q |
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| T |
8541483 |
tagttagtggggtggtctcaatcagtgtggctgaattgattctataaactaagttaggcttgtttggcaagaaat |
8541557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 8551969 - 8552042
Alignment:
| Q |
105 |
tagttagtggggtggtctaaatctgcgtggctgaattgattatgtaaac-caagttaggcttgtttggcaagaa |
177 |
Q |
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| T |
8551969 |
tagttagtggggtggtcttaatcagtgtggctgaattgattctgtaaacgaaagttaggcttgtttggcaagaa |
8552042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 43246816 - 43246888
Alignment:
| Q |
105 |
tagttagtggggtggtctaaatctgcgtggctgaattgattatgtaaaccaagttaggcttgtttggcaagaa |
177 |
Q |
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| T |
43246816 |
tagttagtggggatgtctaaatcagtgtggctgcattgattctgtaaacgaagttaggcttgtttggcaagaa |
43246888 |
T |
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