View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7415_low_11 (Length: 522)
Name: NF7415_low_11
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 34922642 - 34922170
Alignment:
| Q |
1 |
ctaaacccacaccccctatttatagcaccactaattgcaaggagcaatgagtaaggatgcacattttgagaaagagacgcacacattggactttgccaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34922642 |
ctaaacccacaccccctatttatagcaccactaattgcaaggagcaatgagtaaggatgcacattttgagaaagagacgcacacattggactttgccaat |
34922543 |
T |
|
| Q |
101 |
ggaccatgccgtgaagtaagaagttgtctgtcgaa----ggtgtggcaccacgaaccccctcgacgaagaaaataacgcattacccgctcagatagccga |
196 |
Q |
| |
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|||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34922542 |
ggaccatgccgtgaagtaggaagttgtctatcgaacgaaggtgtggcaccacgaaccccctcgacgaagaaaataatgcattacccgctcagatagccga |
34922443 |
T |
|
| Q |
197 |
acaatgctaaacactctaagtcatgtcatgttgacgagtactaataggaatacattttttctataaatactcgttttgtacaatgtattcgacaaacaat |
296 |
Q |
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|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34922442 |
acaatgataaacactctaagtcatgtcatgttgacgagtactaataggaatacattttttctataaatactcattttgtacaatgtattcgacaaacaat |
34922343 |
T |
|
| Q |
297 |
cgatctaagaaagactacttgcactatatttctctttaccttttttcctttgtctttatttacatgcatttcctaatctagtaggnnnnnnnntctaaaa |
396 |
Q |
| |
|
||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34922342 |
cgatcaaagagagactacttgcattatatttctctttaccttttttcctttgtctttatttacatgcatttcctaatctagtagg-aaaaaaatctaaaa |
34922244 |
T |
|
| Q |
397 |
caagtgtactttaggaacacacagtttctttaagtacacgaacgatccacatccataggtagaccaacaaataata |
472 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
34922243 |
caagtgtactttaggaacacacagtttctttaagtacacg-acgatccacatccat-ggtagaccaacaaataata |
34922170 |
T |
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