View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7415_low_12 (Length: 492)
Name: NF7415_low_12
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 11 - 492
Target Start/End: Complemental strand, 34923191 - 34922712
Alignment:
| Q |
11 |
gagatgaagaaaaaggtgtggtttctgttagtaatgctaagttaccatataagattcaatctgcttcctttaagattagtgcttcaaaagtagctgctat |
110 |
Q |
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| T |
34923191 |
gagatgaagaaaaaggtgtggtttctgttagtaatgctaagttaccatataagattcaatctgcttcctttaagattagtgtttcaaaagtagctgctat |
34923092 |
T |
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| Q |
111 |
tgatgtggatgattcatgtgttagtcaaaacattcaagatatgtaaatttgactatgttttatgttgtaatagcactagttctgctggtttggtcaagtt |
210 |
Q |
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| T |
34923091 |
tgatgtggatgattcatgtgttagtgaaaacattcaagatatgtaaatttgactatgttttatgttgtaatagcactagttctgttggtttggtcaagtt |
34922992 |
T |
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| Q |
211 |
tgtagttgagcaatatgatatagtattatatgttgcataaattaattcatttctttgtggattctattctcccacccactaatttcaggatgaaaaattt |
310 |
Q |
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| T |
34922991 |
tgtagttgagcaatatgatatagtattatatgttgcataaattaattcatttctttttggattctat--tcggacccactaatttcaggatgaaaaattt |
34922894 |
T |
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| Q |
311 |
tcaatgatcaatggaagattactaaagaaaaacaatagaatcagtttaatcctaaaagtaattattatgttagctgaaatcggcaaatgagcaaatttag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
34922893 |
acaatgatcaatggaagattactaaagaaaaacaatagaatcagtttaatcctaaaagtaattattatgttagctgaaatcggtagatgagcaaatttag |
34922794 |
T |
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| Q |
411 |
gttagtcgagcttcccctagccaatggaaggttaggcgtaccttataaccacacgagagttagtcgattctttcttgaatct |
492 |
Q |
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| T |
34922793 |
gttagtcgagcttcccctagccaatggaaggttaggcgtaccttataaccatacgagagttagtcgattctttcttgaatct |
34922712 |
T |
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