View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7415_low_17 (Length: 409)
Name: NF7415_low_17
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 390
Target Start/End: Original strand, 45103778 - 45104155
Alignment:
| Q |
13 |
agaatatgcaagggcaatattgtcatcaaacaagtactgatgatgaagaagagttcttgagagacataattcttcagcaacctgttgcatattctggaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45103778 |
agaatatgcaagggcaatattgtcatcaaacaagtactgatgatgaagaagagttcttgagagacataattcttcagcaacctgttacatattctggaag |
45103877 |
T |
|
| Q |
113 |
cagtttatcatcttctagtgagatggacggttcagatagctcggggaaaaagcttcatccttcatcatcaccgttcactccaaggacattcattctctct |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
45103878 |
cagtttatcatcttctagtgagatggacggttcagatagctcggggaaaaaacttcatcttttatcaacaccatccactccaaggacattcattctctct |
45103977 |
T |
|
| Q |
213 |
tttgataaatctaccataataccagctactactacaccagaatcagaagaagtgtcaagaccaaagagtataagtaataataataagaggagtttagaac |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
45103978 |
tttgataaatctaccataataccagctactactacaccagaatcagaagaagtaccaagaacaaagagtagaagtaataataataagaggagtttggaac |
45104077 |
T |
|
| Q |
313 |
caaaagcaaaagctagtaaccaaactggaaagaagagtagaagtggttctcagtgtttggatcacattatggctgaga |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45104078 |
caaaagcaaaagctagtaaccaaactggaaagaagagtagaagtggttctcagtgtttggatcacattatggctgaga |
45104155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 23 - 390
Target Start/End: Original strand, 45130417 - 45130781
Alignment:
| Q |
23 |
agggcaatattgtcatcaaacaagtactgatgatgaagaagagttcttgagagacataattcttcagcaacctgttgcatattctggaagcagtttatca |
122 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | ||||| |
|
|
| T |
45130417 |
agggcaatattgtcatcaaactagtgctgatgatgaagaagagttcttgagagacataatccttcagcaacctgttacatattctggaagta---tatca |
45130513 |
T |
|
| Q |
123 |
tcttctagtgagatggacggttcagatagctcggggaaaaagcttcatccttcatcatcaccgttcactccaaggacattcattctctcttttgataaat |
222 |
Q |
| |
|
|| |||| ||||||||| || |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45130514 |
tcctctaatgagatggatggctcagattgctcaaagaaaaagcttcatccttcatcatcaccgttcactccaaggacattcattctctcttttgataaat |
45130613 |
T |
|
| Q |
223 |
ctaccataataccagctactactacaccagaatcagaagaagtgtcaagaccaaagagtataagtaataataataagaggagtttagaaccaaaagcaaa |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45130614 |
ctaccataataccagctactactacaccagaatcagaagaagtgtcaataccaaagagtagaagtaataataataagaggagtttggaaccaaaagcaaa |
45130713 |
T |
|
| Q |
323 |
agctagtaaccaaactggaaagaagagtagaagtggttctcagtgtttggatcacattatggctgaga |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
45130714 |
agctagtaaccaaactggaaagaagagtagaagtggttctcagtatctggatcacattatggctgaga |
45130781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University