View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7415_low_2 (Length: 764)
Name: NF7415_low_2
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_low_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 707; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 20 - 750
Target Start/End: Complemental strand, 10545525 - 10544795
Alignment:
| Q |
20 |
tttgcagtattgaaaacttctttgttgcatccatcaagaacggtgacggaccaagcaggaacaatgtatttaccatcattttgcaagtcaacatttccat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10545525 |
tttgcagtattgaaaacttctttgttgcatccatcaagaatggtgacggaccaagcaggaacaaagtatttaccatcattttgcaagtcaacatttccat |
10545426 |
T |
|
| Q |
120 |
cagtgttatctttatcattgctcaagaaacaaaatcttgctccaacagaattagtgtatgttgttagtgtgattccattaccaagatccttgtcattcct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10545425 |
cagtgttatctttatcattgctcaagaaacaaaatcttgctccaacagaattagtgtatgttgttagtgtgattccattaccaagatccttgtcattcct |
10545326 |
T |
|
| Q |
220 |
tgaagtataattcgtaagaaccttttcacctaatttaattgcttcatgaaggaacttaagatgcccgtatttcggttgattcaaattcccatactcgttg |
319 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10545325 |
tgaagtataattcgtaagtaccttttcgcctaatttaattgcttcatgaaggaacttaagatgcccgtatttcggttgattcaaattcccatactcgttg |
10545226 |
T |
|
| Q |
320 |
atcggtgcatcatagtcataagatgtaataatatatggtccaccagatgtgcgaccaaaattggttcctccatggtacatgtagtaattgttaaatacac |
419 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10545225 |
atcggtgcatcatagtcataagatgttataatatatggtccaccagatgtgcgaccaaaattggttcctccatggtacatgtagtaattgttaaatacac |
10545126 |
T |
|
| Q |
420 |
caccattttggaaaaaacgtgcaacagcataagctgaatcttcagcagttctatgtggagctctttcaccccatttttgaaaccaaccaatccaattttc |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
10545125 |
caccattttggaaaaaacgtgcaacagcataagctgaatcttcagcagttctatgtggagctctttcaccccatttttgaaaccatccaatccaattttc |
10545026 |
T |
|
| Q |
520 |
agtgaacatttttggactttttgggttattaggtttaaaattgtgacaataatacccattgcaagtattgatgataggttgaggagcatcattttgttga |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10545025 |
agtgaacatttttggactttttgggttattaggtttaaaattgtgacaataatacccattgcaagtattgatgataggttgaggagcatcattttgttga |
10544926 |
T |
|
| Q |
620 |
cacatgaaccatggaacaccgatattttgtgctaaagccatttgagcagcccatttaatatatgctttccctggttctttgaaattccacatgatatctc |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10544925 |
cacatgaaccatggaacaccgatattttgtgctaaagccatttgagcagcccatttaatatatgctttccctggttctttgaaattccacatgatatctc |
10544826 |
T |
|
| Q |
720 |
catattcattctcaatttgagctagaataat |
750 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
10544825 |
catattcattctcaatttgagctagaataat |
10544795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 751
Target Start/End: Complemental strand, 9643582 - 9642848
Alignment:
| Q |
20 |
tttgcagtattgaaaacttctttgttgcatccatcaagaacggtgacggaccaagcaggaacaatgtatttaccatcattttgcaagtcaacatttccat |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||| || | || || | || |||||||| ||||||||||| ||||||||||| ||| ||||| || || |
|
|
| T |
9643582 |
tttgcagtattgaaaacttcttggttgcaaccgttaataattgaaacagaccaagccggaacaatgtaaacaccatcatttttcaaatcaacccttgcac |
9643483 |
T |
|
| Q |
120 |
cagtgt---tatctttatcattgctcaagaaacaaaatcttgctccaacagaattagtgtatgttgttagtgtgattccattaccaagatccttgtcatt |
216 |
Q |
| |
|
|| || ||| || | |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || ||||||| ||| || |
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|
| T |
9643482 |
caaggtcagtattgttgttattgctcaagaaacaaaatcttgctccactggaattagtgtatgttgttagtgtgagtccattgccgagatcctcgtcttt |
9643383 |
T |
|
| Q |
217 |
ccttgaagtataattcgtaagaaccttttcacctaatttaattgcttcatgaaggaacttaagatgcccgtatttcggttgattcaaattcccatactcg |
316 |
Q |
| |
|
||||| | ||||||| ||||| || |||||||||||||| |||||| ||||||| ||| ||||| || |||| ||||||||||||||||||||||| |
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|
| T |
9643382 |
ccttgcactataatttgtaagtacattttcacctaatttgattgctgcatgaagattcttcagatgtccccatttaggttgattcaaattcccatactca |
9643283 |
T |
|
| Q |
317 |
ttgatcggtgcatcatagtcataagatgtaataatatatggtccaccagatgtgcgaccaaaattggttcctccatggtacatgtagtaattgttaaata |
416 |
Q |
| |
|
| || ||||||||||||||||| ||||| | ||||| || ||||| | ||||||||||| || ||||||||||||||||||||||||||||| |||| |
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|
| T |
9643282 |
tcaattggtgcatcatagtcatatgatgttgttatatacggcccacctgcggtgcgaccaaagtttgttcctccatggtacatgtagtaattgtttaata |
9643183 |
T |
|
| Q |
417 |
caccaccattttggaaaaaacgtgcaacagcataagctgaatcttcagcagttctatgtggagctctttcaccccatttttgaaaccaaccaatccaatt |
516 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9643182 |
caccaccattttggaaaaaacgtgccacagagaaagctgaatcttcagcacttctatgtggaaccctttcaccccatttttggaaccaaccaatccaatt |
9643083 |
T |
|
| Q |
517 |
ttcagtgaacatttttggactttttgggttattaggtttaaaattgtgacaataatacccattgcaagtattgatgataggttgaggagcatcattttgt |
616 |
Q |
| |
|
||||||||| ||||| ||||||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
9643082 |
ttcagtgaaaattttaggactttttggattgttaggttgaaaattgtgacaataatatccattgcaagtattgatgataggttgaggagcatcttgttgt |
9642983 |
T |
|
| Q |
617 |
tgacacatgaaccatggaacaccgatattttgtgctaaagccatttgagcagcccatttaatatatgctttccctggttctttgaaattccacatgatat |
716 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||| |||||| ||||||||||||| || |||||| ||||| | |||||| ||||||||||||| | |
|
|
| T |
9642982 |
tgacacatgatccatggaacaccaatgttttgtgctagagccatctgagcagcccattgaacatatgccttcccagcatctttgtaattccacatgatgt |
9642883 |
T |
|
| Q |
717 |
ctccatattcattctcaatttgagctagaataata |
751 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
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|
| T |
9642882 |
ccccatattcattctcaatttgagctagaataata |
9642848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 323 - 750
Target Start/End: Complemental strand, 279059 - 278632
Alignment:
| Q |
323 |
ggtgcatcatagtcataagatgtaataatatatggtccaccagatgtgcgaccaaaattggttcctccatggtacatgtagtaattgttaaatacaccac |
422 |
Q |
| |
|
||||||||||||||||| | |||||| ||| | || ||||| | || || |||||||| ||||||||||| |||| ||||||||| | | |||||| |
|
|
| T |
279059 |
ggtgcatcatagtcatatgttgtaatgataaacgggccacccgcggttcgtccaaaatttgttcctccatgatacaagtagtaattttggagggcaccac |
278960 |
T |
|
| Q |
423 |
cattttggaaaaaacgtgcaacagcataagctgaatcttcagcagttctatgtggagctctttcaccccatttttgaaaccaaccaatccaattttcagt |
522 |
Q |
| |
|
||||||| || ||||||||||| | | | |||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||| |||||| || || |
|
|
| T |
278959 |
cattttgaaagaaacgtgcaactgaaaatgctgaatcttcagctgttctatgtggcctcctttcaccccatttttggaaccagccaacccaattctctgt |
278860 |
T |
|
| Q |
523 |
gaacatttttggactttttgggttattaggtttaaaattgtgacaataatacccattgcaagtattgatgataggttgaggagcatcattttgttgacac |
622 |
Q |
| |
|
|| ||||| || ||||| || || || || || ||| ||| ||||||||| |||||||| |||| ||| |||| ||||||| ||||| | ||| |
|
|
| T |
278859 |
aaatattttagggcttttaggattgtttggcttgaaagtgtcacaataatagccattgcatgtatcgataatagtggctggagcatttttttgcttgcac |
278760 |
T |
|
| Q |
623 |
atgaaccatggaacaccgatattttgtgctaaagccatttgagcagcccatttaatatatgctttccctggttctttgaaattccacatgatatctccat |
722 |
Q |
| |
|
|||| |||||| ||||| |||||||| ||||||||||||| ||| ||||||||| |||| ||||| | |||| ||| | |||| |||||||| |
|
|
| T |
278759 |
atgatccatgggacaccaatattttgagctaaagccatttcggcacaccatttaatgtatgaattcccagcttctccataatgacttatgacatctccat |
278660 |
T |
|
| Q |
723 |
attcattctcaatttgagctagaataat |
750 |
Q |
| |
|
||||||||||||||||||| | |||||| |
|
|
| T |
278659 |
attcattctcaatttgagccaaaataat |
278632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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