View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7415_low_20 (Length: 392)
Name: NF7415_low_20
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 380
Target Start/End: Complemental strand, 6758042 - 6757677
Alignment:
| Q |
16 |
tcttccacctacagcacggaaggcagtgcaaaccaaattagtaaacataagaaatcatggcattacaaaaaatagcttcctgatattagcagttcagagc |
115 |
Q |
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| T |
6758042 |
tcttccacctacagcatggaaggcagtacaaaccaaattagtaaacataagaaatcatgacattacaaaaaatagcttcctgatattagcagttcagagc |
6757943 |
T |
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| Q |
116 |
aaatattagtgttccaaagaactatgatcagacatattttaaaaggcaacaactaaagtatgtgtccaaatcctaagacaatctactgcattatacttgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6757942 |
aaatattagtgttccaaagaactatgatcagacatattttaaaaggcaacaactaaagtatgtgtccaaatcctaagacaatttactgcattatacttgc |
6757843 |
T |
|
| Q |
216 |
atagctctagggacatttaaattataaatgcaactannnnnnnatttatggaag-nnnnnnncaagatttaaatcactcagacaatatttgttcaactca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6757842 |
atagctctagggacatttaaattataaatgcaactatttttttatttatggaagaaaaaaaacaagatttaaatcactcagacaatatttgttcaactca |
6757743 |
T |
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| Q |
315 |
gtccagagatattgattaataaatgtaagttaccctcggatgagatcatgagtatttgtgtcattc |
380 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6757742 |
gtcccgagatattgattaataaatgtaagttaccctcggatgagatcatgagtatttgtgtcattc |
6757677 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 40087465 - 40087507
Alignment:
| Q |
67 |
aaatcatggcattacaaaaaatagcttcctgatattagcagtt |
109 |
Q |
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| T |
40087465 |
aaatcatggcattacaaaaaatagcttcctgattttaacagtt |
40087507 |
T |
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