View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7415_low_22 (Length: 389)

Name: NF7415_low_22
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7415_low_22
NF7415_low_22
[»] chr2 (2 HSPs)
chr2 (119-389)||(8520420-8520693)
chr2 (247-298)||(37831112-37831163)
[»] chr7 (2 HSPs)
chr7 (246-298)||(28006700-28006752)
chr7 (146-180)||(28006861-28006895)
[»] chr1 (3 HSPs)
chr1 (119-182)||(15840680-15840745)
chr1 (138-175)||(2660608-2660645)
chr1 (141-190)||(8133632-8133681)
[»] chr4 (2 HSPs)
chr4 (138-181)||(26475104-26475147)
chr4 (334-382)||(2792282-2792330)
[»] chr3 (2 HSPs)
chr3 (136-183)||(24991741-24991788)
chr3 (139-183)||(12220930-12220974)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 119 - 389
Target Start/End: Complemental strand, 8520693 - 8520420
Alignment:
Q  119 gttgagccaaaactcatccctccatcgtgaatggccacataaacaaaatccaaacacctatcgtcatctacttacaacaaagacaatnnnnnnnncatca 218  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||        |||||    
T  8520693 gttgagcaaaaactcatccctccatcgtgaatggccacataaacaaaatccaaacacctatcgctttctacttacaccaaagacaataaaaaaaacatca 8520594  T
Q  219 caccttctgaaccccaaacaaca---ccaccaccacaattgagccaaattcccacactcattcagatttcatcaccaatcaatatttggtctgttcaaag 315  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||    
T  8520593 caccttctgaaccccaaacaacaacaccaccaccacaattgagccaaattcccgcactcattcaaatttcatcaccaatcaatatttggtgtgttcaaag 8520494  T
Q  316 gcaacaccagaacaaaccaaaaaactttagttaagaaacagacttctaatctcgaatcaaaagtgattggtcca 389  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  8520493 gcaacaccagaacaaaccaaaaaactttagtcaagaagcagacttctgatctcgaatcaaaagtgattggtcca 8520420  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 37831163 - 37831112
Alignment:
Q  247 accacaattgagccaaattcccacactcattcagatttcatcaccaatcaat 298  Q
    ||||||| ||||||||||| | ||||||||||||||| || |||||||||||    
T  37831163 accacaactgagccaaatttcaacactcattcagattccaccaccaatcaat 37831112  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 28006752 - 28006700
Alignment:
Q  246 caccacaattgagccaaattcccacactcattcagatttcatcaccaatcaat 298  Q
    ||||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  28006752 caccacaattgagccaaattcccacactcattcggattccaccaccaatcaat 28006700  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 28006895 - 28006861
Alignment:
Q  146 tgaatggccacataaacaaaatccaaacacctatc 180  Q
    |||||||||||||||||||||| ||||||||||||    
T  28006895 tgaatggccacataaacaaaattcaaacacctatc 28006861  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 15840680 - 15840745
Alignment:
Q  119 gttgagccaaaac-tcatccctccatcgtgaatggccaca-taaacaaaatccaaacacctatcgt 182  Q
    |||| |||||||| |||| |||||||||||||||||||||  |||||||||||||||| |||||||    
T  15840680 gttgtgccaaaacctcatacctccatcgtgaatggccacagaaaacaaaatccaaacatctatcgt 15840745  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 2660608 - 2660645
Alignment:
Q  138 ctccatcgtgaatggccacataaacaaaatccaaacac 175  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  2660608 ctccattgtgaagggccacataaacaaaatccaaacac 2660645  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 8133681 - 8133632
Alignment:
Q  141 catcgtgaatggccacataaacaaaatccaaacacctatcgtcatctact 190  Q
    |||| |||||||||||| ||||||||| ||||||||||| |||| |||||    
T  8133681 catcatgaatggccacaaaaacaaaattcaaacacctattgtcaactact 8133632  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 26475147 - 26475104
Alignment:
Q  138 ctccatcgtgaatggccacataaacaaaatccaaacacctatcg 181  Q
    |||||||||||||||||| | || ||||||||||||||||||||    
T  26475147 ctccatcgtgaatggccatagaatcaaaatccaaacacctatcg 26475104  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 382
Target Start/End: Original strand, 2792282 - 2792330
Alignment:
Q  334 aaaaaactttagttaagaaacagacttctaatctcgaatcaaaagtgat 382  Q
    ||||||||| ||| ||||||| ||||||  |||||||||||||||||||    
T  2792282 aaaaaacttgagtcaagaaactgacttccgatctcgaatcaaaagtgat 2792330  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 24991741 - 24991788
Alignment:
Q  136 ccctccatcgtgaatggccacataaacaaaatccaaacacctatcgtc 183  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||||    
T  24991741 ccctccaacgtgaatgggcacaaaaacaaaatccaaatacctatcgtc 24991788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 12220974 - 12220930
Alignment:
Q  139 tccatcgtgaatggccacataaacaaaatccaaacacctatcgtc 183  Q
    |||||| |||||| ||||| ||||||||||||||||| |||||||    
T  12220974 tccatcttgaatgaccacaaaaacaaaatccaaacacatatcgtc 12220930  T

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