View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7415_low_23 (Length: 377)
Name: NF7415_low_23
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 3706753 - 3706388
Alignment:
| Q |
1 |
aacgcaattttgatctcaaccacccactacatctcattttcgagaaacaatgaaataaatcatactgtgtttgtttgctgacctttgnnnnnnn-ctatt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
3706753 |
aacgcaattttgatctcaaccacccactacatctcattttcgagaaacaatgaaataaatcatactgtgtttgtttgctgaccattgaaaaaaaactatt |
3706654 |
T |
|
| Q |
100 |
cttaactttccctccaagcaaca--gtctaaaaccattaaattccaccgttgtttatctcattcctcaacattcttataaatacacgcttgcaatttagc |
197 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3706653 |
cttaactttccctccaagcaacaaggtctaaaaccattaaattccaccgttgtttatctcattcctcaacattcttataaatacacgcttccaatttagt |
3706554 |
T |
|
| Q |
198 |
aacacat--catcacatnnnnnnncaaatcaaattttcccatcacacacttcgcatttacctttactcaaatcagcacaagcaaatccaaatgcacaaaa |
295 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3706553 |
aacacatatcatcacataaaaaaacaaatcaaattttcccatcacacacttcacatttacctttactcaaatcagcacaagcaaatcaaaatgcacaaaa |
3706454 |
T |
|
| Q |
296 |
gcatatcaggttcatcattgggaccaggtggtttggacctaactcaatccttcttcaagtccatcc |
361 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3706453 |
gcatatcaggttcatcattgggaccagatggtttggacctaactcaatccttcttcaagtccatcc |
3706388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University