View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7415_low_24 (Length: 347)

Name: NF7415_low_24
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7415_low_24
NF7415_low_24
[»] chr4 (9 HSPs)
chr4 (1-307)||(14178708-14179012)
chr4 (1-307)||(14173954-14174258)
chr4 (1-307)||(28611612-28611916)
chr4 (1-307)||(28606850-28607154)
chr4 (1-307)||(44161603-44161905)
chr4 (1-307)||(11104486-11104785)
chr4 (46-299)||(48826752-48827000)
chr4 (153-254)||(48708155-48708256)
chr4 (145-238)||(24726288-24726381)
[»] chr8 (4 HSPs)
chr8 (1-307)||(12930693-12930996)
chr8 (1-307)||(12935439-12935742)
chr8 (145-215)||(26504985-26505055)
chr8 (147-259)||(15588948-15589060)
[»] chr1 (1 HSPs)
chr1 (1-307)||(34907156-34907459)
[»] chr7 (5 HSPs)
chr7 (1-307)||(37040470-37040774)
chr7 (1-259)||(15290249-15290499)
chr7 (45-252)||(12099060-12099263)
chr7 (25-202)||(12082055-12082227)
chr7 (145-257)||(2757307-2757418)
[»] chr5 (3 HSPs)
chr5 (1-307)||(29106922-29107223)
chr5 (1-307)||(42911037-42911337)
chr5 (168-258)||(38997230-38997320)
[»] chr2 (1 HSPs)
chr2 (1-301)||(8539200-8539498)
[»] chr3 (3 HSPs)
chr3 (4-129)||(51302181-51302306)
chr3 (223-259)||(51302308-51302344)
chr3 (269-307)||(51302937-51302975)
[»] chr6 (2 HSPs)
chr6 (168-259)||(2100291-2100379)
chr6 (145-175)||(2100723-2100753)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 14178708 - 14179012
Alignment:
Q  1 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14178708 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtag 14178807  T
Q  101 gtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 200  Q
    ||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178808 gtctcacgggaaacactatattgtatctct----tgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 14178903  T
Q  201 ttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttca--nnnnnnnnngctaccgctgcgctgcaagatccaatctct 298  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||| |||||    
T  14178904 ttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttattgctaccgctgcgctgcaagatccagtctct 14179003  T
Q  299 tttggattt 307  Q
    |||||||||    
T  14179004 tttggattt 14179012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 14173954 - 14174258
Alignment:
Q  1 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14173954 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtag 14174053  T
Q  101 gtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 200  Q
    ||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174054 gtctcacgggaaacactatattgtatctct----tgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 14174149  T
Q  201 ttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttca--nnnnnnnnngctaccgctgcgctgcaagatccaatctct 298  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||| |||||    
T  14174150 ttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcactaccgctgcgctgcaagatccagtctct 14174249  T
Q  299 tttggattt 307  Q
    |||||||||    
T  14174250 tttggattt 14174258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 28611916 - 28611612
Alignment:
Q  1 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28611916 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtag 28611817  T
Q  101 gtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 200  Q
    ||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611816 gtctcacgggaaacactatattgtatctct----tgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 28611721  T
Q  201 ttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttca--nnnnnnnnngctaccgctgcgctgcaagatccaatctct 298  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||           |||||||||||||||||||||||| |||||    
T  28611720 ttgtcccgtggtttttccctcggtattagagggtttttcacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtctct 28611621  T
Q  299 tttggattt 307  Q
    |||||||||    
T  28611620 tttggattt 28611612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 28607154 - 28606850
Alignment:
Q  1 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28607154 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtag 28607055  T
Q  101 gtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 200  Q
    ||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28607054 gtctcacgggaaacactatattgtatctct----tgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 28606959  T
Q  201 ttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttca--nnnnnnnnngctaccgctgcgctgcaagatccaatctct 298  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |           |||||||||||||||||||||||| |||||    
T  28606958 ttgtcccgtggtttttccctcggtattagagggtttttcacgttaaatattggtgttaattttttttatcgctaccgctgcgctgcaagatccagtctct 28606859  T
Q  299 tttggattt 307  Q
    |||||||||    
T  28606858 tttggattt 28606850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 44161603 - 44161905
Alignment:
Q  1 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44161603 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtag 44161702  T
Q  101 gtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 200  Q
    |||| |||||||||||||||||||||||||              ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  44161703 gtcttacgggaaacactatattgtatctct----tgtgtgtgtaagagagtggagaga--attgtaatattctttaatatagtggaatatttttcggagt 44161796  T
Q  201 ttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttca--nnnnnnnnngctaccgctgcgctgcaagatccaatctct 298  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||    
T  44161797 ttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccaatctct 44161896  T
Q  299 tttggattt 307  Q
    |||||||||    
T  44161897 tttggattt 44161905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 11104486 - 11104785
Alignment:
Q  1 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtag 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||| ||| |    
T  11104486 gtgttgagtaaatccagagagtgtaggaaaaatacaccgggtggatatcatctctataacttctaggtgttataaaataatagcatttgaataggagtgg 11104585  T
Q  101 gtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 200  Q
    ||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||  |||| |||||||||||||||||||    
T  11104586 gtctcacgggaaacactatattgtatctct-----ttgtgtgtaagagagtggagagaatattgtaatattcttagatatggtggaatatttttcggagt 11104680  T
Q  201 ttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnnngctaccgctgcgctgcaagatccaatctcttt 300  Q
    ||||||||||| ||| |||||  ||||||||| ||||| | ||||||||||||||||||         ||||| ||||||||||||||||||||||||||    
T  11104681 ttgtcccgtgg-tttaccctcgatattagaggattttctatgttaaatattggtgttca-tttttatcgctacagctgcgctgcaagatccaatctcttt 11104778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 299
Target Start/End: Complemental strand, 48827000 - 48826752
Alignment:
Q  46 tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnna 145  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||| |||   |||||||||||||||||||||||||||||              |    
T  48827000 tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgta----a 48826905  T
Q  146 gagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgtta 245  Q
    ||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||| ||||||||||||    
T  48826904 gagagcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgtta 48826806  T
Q  246 aatattggtgttcannnnnnnnngctaccgctgcgctgcaagatccaatctctt 299  Q
    |||||||||||||          |||||||||||||||||||||||||||||||    
T  48826805 aatattggtgttctttttctatcgctaccgctgcgctgcaagatccaatctctt 48826752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 254
Target Start/End: Complemental strand, 48708256 - 48708155
Alignment:
Q  153 gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattg 252  Q
    ||||||||||||||||||| ||||||||| || ||||||||| |||||||||| ||||||||||| || ||||||| || ||||| || |||||||||||    
T  48708256 gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg 48708157  T
Q  253 gt 254  Q
    ||    
T  48708156 gt 48708155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 24726381 - 24726288
Alignment:
Q  145 agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttc 238  Q
    ||||| ||||||||||||| | || |||||||||||| ||||||||||||| ||||||||| ||||| ||||||||   ||||||| |||||||    
T  24726381 agagaatggagagaatattattatgttctttaatataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc 24726288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 12930693 - 12930996
Alignment:
Q  1 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  12930693 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtag 12930792  T
Q  101 gtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 200  Q
    ||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12930793 gtctcacgggaaacactatattgtatctct----tgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 12930888  T
Q  201 ttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttca-nnnnnnnnngctaccgctgcgctgcaagatccaatctctt 299  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||| ||||||    
T  12930889 ttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctctt 12930988  T
Q  300 ttggattt 307  Q
    ||||||||    
T  12930989 ttggattt 12930996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 12935439 - 12935742
Alignment:
Q  1 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||    
T  12935439 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaagtag 12935538  T
Q  101 gtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 200  Q
    ||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935539 gtctcacgggaaacactatattgtatctct----tgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 12935634  T
Q  201 ttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttca-nnnnnnnnngctaccgctgcgctgcaagatccaatctctt 299  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||| | ||||    
T  12935635 ttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtttctt 12935734  T
Q  300 ttggattt 307  Q
    ||| ||||    
T  12935735 ttgaattt 12935742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 26505055 - 26504985
Alignment:
Q  145 agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttt 215  Q
    ||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | ||||||||    
T  26505055 agagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtggtttt 26504985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 259
Target Start/End: Original strand, 15588948 - 15589060
Alignment:
Q  147 agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaa 246  Q
    |||||||||| ||| |||||||||| ||| ||| |||| |||||||||  ||||||||| | || |||||| |||| || ||||||||||| ||   |||    
T  15588948 agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa 15589047  T
Q  247 atattggtgttca 259  Q
    |||||| ||||||    
T  15589048 atattgatgttca 15589060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 34907156 - 34907459
Alignment:
Q  1 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  34907156 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtag 34907255  T
Q  101 gtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 200  Q
    ||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907256 gtctcacgggaaacactatattgtatctct----tgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 34907351  T
Q  201 ttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttca-nnnnnnnnngctaccgctgcgctgcaagatccaatctctt 299  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||| ||||||    
T  34907352 ttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctctt 34907451  T
Q  300 ttggattt 307  Q
    ||||||||    
T  34907452 ttggattt 34907459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 37040774 - 37040470
Alignment:
Q  1 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtag 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37040774 gtgttgagtaaatccagagagtgtgggaaaaatacatcgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtag 37040675  T
Q  101 gtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 200  Q
    ||||||||| ||||||||||||||||||||              |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37040674 gtctcacggaaaacactatattgtatctct----tgtgtgtgtgagagagtggagaaaatattgtaatattctttaatatagtggaatatttttcggagt 37040579  T
Q  201 ttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttca--nnnnnnnnngctaccgctgcgctgcaagatccaatctct 298  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||| ||| |    
T  37040578 ttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtcttt 37040479  T
Q  299 tttggattt 307  Q
    |||||||||    
T  37040478 tttggattt 37040470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 15290249 - 15290499
Alignment:
Q  1 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtag 100  Q
    ||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||  |||||||| |||||| ||| |    
T  15290249 gtgttgactaaatccagaaagtgtgg-aaaaatacaccgggtgggtatcatctctataacttctaggtgctgaaata--atagcattcgaataggagtgg 15290345  T
Q  101 gtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 200  Q
    ||||||||| ||||||||||||||||||||              |||||||||||||||||||||||||||||| |||||||||||| || ||| |||||    
T  15290346 gtctcacgg-aaacactatattgtatctcttgtgtgtgta----agagagtggagagaatattgtaatattcttaaatatagtggaaaatcttttggagt 15290440  T
Q  201 ttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttca 259  Q
    |||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  15290441 ttgtcccgtggtttatacctcggtattagagggttttccacgttaaatattggtgttca 15290499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 45 - 252
Target Start/End: Original strand, 12099060 - 12099263
Alignment:
Q  45 gtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnn 144  Q
    |||||||||||||||||| |||||| ||||| |||||| |||| |||||| |||  |||||||  ||||||| ||||||| |||||                  
T  12099060 gtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcgtgta---- 12099155  T
Q  145 agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgtt 244  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||| |||||||||| ||   ||||||||||||| |||||     
T  12099156 agagagtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggtttttcacgta 12099255  T
Q  245 aaatattg 252  Q
    ||||||||    
T  12099256 aaatattg 12099263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 12082055 - 12082227
Alignment:
Q  25 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 124  Q
    |||||||||| | ||||| ||||| |||||||||||||||||| ||||||| |||||| |||| |||||| ||   ||||||   |||||||||||||||    
T  12082055 gggaaaaatatatcgggtaggtattatctctataacttctaggcgctataaaataataacatttgaataggagcgagtctcattagaaacactatattgt 12082154  T
Q  125 atctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagttt 202  Q
    ||||||              |||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||    
T  12082155 atctct----tttccgtgtaagagagtggagaaaatattgtaatattc-ttaatatagtggaatattttttggagttt 12082227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 2757418 - 2757307
Alignment:
Q  145 agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgtt 244  Q
    ||||||||||||||||| || |||||| || |||||||||||||| |||||  | |||||| | |||||||||| | || |||| |||| ||| ||  ||    
T  2757418 agagagtggagagaatagtgcaatatttttaaatatagtggaata-ttttcaaaatttgtctcatggtttttccttaagcattaaaggggttttcatatt 2757320  T
Q  245 aaatattggtgtt 257  Q
    |||||||||||||    
T  2757319 aaatattggtgtt 2757307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 29107223 - 29106922
Alignment:
Q  1 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtggg-tatcatctctataacttctaggtgctataatataatagcattagaatagaagta 99  Q
    ||||||||||||||||||||||||||||||||||||  ||||||| |||||||| |||||||||||||||||| || |||||||||||||||||||||||    
T  29107223 gtgttgagtaaatccagagagtgtgggaaaaatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagta 29107124  T
Q  100 ggtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggag 199  Q
    |||||||||||||||||||| ||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29107123 ggtctcacgggaaacactat-ttgtatctcttgtgtgtgta----agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggag 29107029  T
Q  200 tttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnnngctaccgctgcgctgcaagatccaatctctt 299  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||| ||    
T  29107028 tttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca-tttttaacgctaccgctgcgctgcaagatccaatctttt 29106930  T
Q  300 ttggattt 307  Q
    ||||||||    
T  29106929 ttggattt 29106922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 42911337 - 42911037
Alignment:
Q  1 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtag 100  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  42911337 gtgttgagtaaatccagagagtgtggaaaaaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaagtag 42911238  T
Q  101 gtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 200  Q
    |||||| ||||||||||||||||||||| |              |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  42911237 gtctcaagggaaacactatattgtatcttt----tgtgtgtgtgagagagtggagagaatattgtaatattcttaaatatagtggaata-ttttcggagt 42911143  T
Q  201 ttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnnngctaccgctgcgctgcaagatccaatctcttt 300  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||         | | |||||||||||||||||| |||||||||    
T  42911142 ttgtcccgtggtttttccctcggtattagagggttttccatgttaaatattggtgttca-tttttatcgttgccgctgcgctgcaagatctaatctcttt 42911044  T
Q  301 tggattt 307  Q
    |||||||    
T  42911043 tggattt 42911037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
Q  168 tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttc 258  Q
    |||||||||||||| |||| ||||||| |||||||||||||| |||||||  ||  ||||||||||||||| |||| |||||||| |||||    
T  38997320 tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc 38997230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 8539200 - 8539498
Alignment:
Q  1 gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtag 100  Q
    ||||| ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||| ||||||||| | |||||| ||| |    
T  8539200 gtgttcagtaaattcagagagtgtgggaaaaatacatcggatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtgg 8539299  T
Q  101 gtctcacgggaaacactata---ttgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgg 197  Q
    ||||||||| ||||||||||   ||||||||||              |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||    
T  8539300 gtctcacgg-aaacactataatattgtatctcttgtgtgtgta----agagagtggagataatattgtaatattcttaaatatagtggaatatctttcgg 8539394  T
Q  198 agtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnnngctaccgctgcgctgcaagatccaatctc 297  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||         | |||||||||||||||||||||||||||    
T  8539395 agtttgtcccgtgatttttccctcggtattagagggttttccacgttaaatattgatgttcattttttattgttaccgctgcgctgcaagatccaatctc 8539494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 51302181 - 51302306
Alignment:
Q  4 ttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtc 103  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||| |||||| ||| ||||    
T  51302181 ttgagtaaatccagagagtgtggataaaatacaccgggtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaataggagtgggtc 51302280  T
Q  104 tcacgggaaacactatattgtatctc 129  Q
    ||||||||||||||||||||||||||    
T  51302281 tcacgggaaacactatattgtatctc 51302306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 51302308 - 51302344
Alignment:
Q  223 gtattagagggttttccacgttaaatattggtgttca 259  Q
    |||||||||||||||||||||||||||||||||||||    
T  51302308 gtattagagggttttccacgttaaatattggtgttca 51302344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 51302937 - 51302975
Alignment:
Q  269 gctaccgctgcgctgcaagatccaatctcttttggattt 307  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  51302937 gctaccgctgcgctgcaagatccaatctgttttggattt 51302975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 2100379 - 2100291
Alignment:
Q  168 tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttca 259  Q
    |||||||||||||||||||||||||||||||||||| |||   ||||||| |||| ||||| |||||||||||| |||||||||| ||||||    
T  2100379 tattctttaatatagtggaatatttttcggagtttgcccc---gtttttcgctcattattaaagggttttccaccttaaatattgatgttca 2100291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 175
Target Start/End: Complemental strand, 2100753 - 2100723
Alignment:
Q  145 agagagtggagagaatattgtaatattcttt 175  Q
    |||||||||||||||||||||||||||||||    
T  2100753 agagagtggagagaatattgtaatattcttt 2100723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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