View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7415_low_28 (Length: 336)

Name: NF7415_low_28
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7415_low_28
NF7415_low_28
[»] chr8 (1 HSPs)
chr8 (16-327)||(9522087-9522400)
[»] chr2 (2 HSPs)
chr2 (76-327)||(9041544-9041806)
chr2 (229-271)||(6637022-6637064)
[»] chr6 (3 HSPs)
chr6 (17-323)||(8962931-8963254)
chr6 (14-323)||(8956099-8956426)
chr6 (216-276)||(24702334-24702394)
[»] chr7 (1 HSPs)
chr7 (216-276)||(38159918-38159978)
[»] chr5 (1 HSPs)
chr5 (222-302)||(16639810-16639890)
[»] chr4 (2 HSPs)
chr4 (222-258)||(27026069-27026105)
chr4 (227-276)||(3241429-3241478)
[»] chr3 (1 HSPs)
chr3 (216-258)||(19145910-19145952)
[»] chr1 (1 HSPs)
chr1 (216-270)||(26487187-26487241)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 9522087 - 9522400
Alignment:
Q  16 gttttggcatacagaggtgccaatgtttcttctgattgtccattttggcataatgaaaacgagactattctccactgtctcctccattgctctcgatatg 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9522087 gttttggcatacagaggtgtcaatgtttcttctgattgtccattttggcataatgaaaacgagactattctccaccgtctcctccattgctctcgatatg 9522186  T
Q  116 ttgcagtttggcatggttgtagtttccctaatccaatttcattgtgcttaggtgtggatgtggataatatagctaaggtaatccacaaaactgtgaagga 215  Q
    |||| | |||||| |||||| |||||||||||||||||||||||||         ||||||||||||||||| |||||||||||||||||  ||||||||    
T  9522187 ttgcggcttggcagggttgtggtttccctaatccaatttcattgtg---------ggatgtggataatatagttaaggtaatccacaaaatagtgaagga 9522277  T
Q  216 -----------ttgcacctttgattatgtggaatatttggtgtacaagaaacaaactagtttttgacaatatttgtccagatatgcactcgattgtcgcg 304  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  9522278 tattgggatccttgcacctttgattatgtggaatatttggtgtacaagaaacaaactagtttttgacaatattcgtccagatatgcactcgattgtcacg 9522377  T
Q  305 acaatatttttccaacttcatct 327  Q
    |||||||||||||||||||||||    
T  9522378 acaatatttttccaacttcatct 9522400  T

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Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 76 - 327
Target Start/End: Original strand, 9041544 - 9041806
Alignment:
Q  76 gagactattctccactgtctcctccattgctctcgatatgttgcagtttggcatggttgtagtttccctaatccaatttcattgtgcttaggtgtggatg 175  Q
    |||||||||||||| |||||||||||||||||||||| || ||| |||| ||| || ||| |||| |||  || ||||||||||||||||||||||||||    
T  9041544 gagactattctccattgtctcctccattgctctcgatctgctgcggttttgcagggatgtggtttacctggtctaatttcattgtgcttaggtgtggatg 9041643  T
Q  176 tggataatatagctaaggtaatccacaaaactgtgaaggat-----------tgcacctttgattatgtggaatatttggtgtacaagaaacaaactagt 264  Q
    ||||||||||||||||||||||||| ||||| |||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9041644 tggataatatagctaaggtaatccataaaacagtgaaggatattggaatccttgcacctttgattatgtggaatatttggtgtacaagaaacaaactagt 9041743  T
Q  265 ttttgacaatatttgtccagatatgcactcgattgtcgcgacaatatttttccaacttcatct 327  Q
    |||||||||||||  || || ||| ||||||||||||||||||||||||| ||||||||||||    
T  9041744 ttttgacaatattcatctagttatacactcgattgtcgcgacaatattttcccaacttcatct 9041806  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 6637022 - 6637064
Alignment:
Q  229 tatgtggaatatttggtgtacaagaaacaaactagtttttgac 271  Q
    |||||||||||||||||| ||||||||||| |||| |||||||    
T  6637022 tatgtggaatatttggtgcacaagaaacaagctaggttttgac 6637064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 8963254 - 8962931
Alignment:
Q  17 ttttggcatacagaggtgccaatgtttcttctgattgtccattttggcataatgaaaacgagactattctccactgtctcctccattgctctcgatatgt 116  Q
    |||||||||||| || || |||||||| || | ||||||||||||| ||||||||| | ||||||||||||||| ||||||||||| ||||||||| |||    
T  8963254 ttttggcatacaaagatgtcaatgtttttttttattgtccattttgtcataatgaagatgagactattctccaccgtctcctccatagctctcgatctgt 8963155  T
Q  117 tgcagtttggcatggttgtagtttccctaatccaatttcattgtgcttaggtgtggatgtggataatatagctaaggtaat------ccacaaaactgtg 210  Q
     || |||||||| ||  || |||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||      |||| |||  |||    
T  8963154 cgcggtttggcagggcggtcgtttccctgatccaattttattgtgcttagatgtggatgtggataatatagctaaggtaatccaccaccaccaaatagtg 8963055  T
Q  211 aagga-----------ttgcacctttgattatgtggaatatttggtgtacaagaaacaaactagtttttgacaatatttgtccagatatgcactcgattg 299  Q
    |||||           ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||  |||| |||||||||||| ||    
T  8963054 aaggatattgggatccttgcacctttgattatgtgaaatattttgtgtacaagaaacaaactagtttttgacaatattcatccaaatatgcactcgactg 8962955  T
Q  300 tcgcgacaatatttttccaacttc 323  Q
    ||||||||||||||| ||||||||    
T  8962954 tcgcgacaatattttcccaacttc 8962931  T

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Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 323
Target Start/End: Original strand, 8956099 - 8956426
Alignment:
Q  14 cagttttggcatacagaggtgccaatgtttcttctgattgtccattttggcataatgaaaacgagactattctccactgtctcctccattgctctcgata 113  Q
    |||||||| | |||| | ||| |||||||| || | ||||||||||||  ||||||||| | ||||||||||||||| ||||||||||| |||||||||     
T  8956099 cagttttgacgtacaaaagtgtcaatgtttttttttattgtccattttatcataatgaagatgagactattctccaccgtctcctccatagctctcgatc 8956198  T
Q  114 tgttgcagtttggcatggttgtagtttccctaatccaatttcattgtgcttaggtgtggatgtggataatatagctaaggtaatcc-----acaaaactg 208  Q
    |   || |||||||| || ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||     || |||  |    
T  8956199 taccgcggtttggcagggctgtcgtttccctgatccaatttcattgtgcttagatgtggatgtggataatatagctaaggtaatccaccataccaaatag 8956298  T
Q  209 tgaagga-----------ttgcacctttgattatgtggaatatttggtgtacaagaaacaaactagtttttgacaatatttgtccagatatgcact--cg 295  Q
    |||||||           ||||||||||||||||||| ||||||| |||||||||||||||| |||||| |||||||||| || || |||||||||  ||    
T  8956299 tgaaggatattgagatccttgcacctttgattatgtgaaatattttgtgtacaagaaacaaattagtttgtgacaatattcgtgcaaatatgcactcgcg 8956398  T
Q  296 attgtcgcgacaatatttttccaacttc 323  Q
    | ||||||||||| ||||||||||||||    
T  8956399 actgtcgcgacaaaatttttccaacttc 8956426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 24702334 - 24702394
Alignment:
Q  216 ttgcacctttgattatgtggaatatttggtgtacaagaaacaaactagtttttgacaatat 276  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  24702334 ttgcagctttgattatgtggaatatttggtgtacaagaaacaaattagtttttgataatat 24702394  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 38159978 - 38159918
Alignment:
Q  216 ttgcacctttgattatgtggaatatttggtgtacaagaaacaaactagtttttgacaatat 276  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  38159978 ttgcacctttgattatgtggaatatttggtgtacaagaaacaagttagtttttgataatat 38159918  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 16639890 - 16639810
Alignment:
Q  222 ctttgattatgtggaatatttggtgtacaagaaacaaactagtttttgacaatatttgtccagatatgcactcgattgtcg 302  Q
    ||||||||||||||||||| |||||| | | |||||||| |||||| || ||||||   |||||||||| |||||| ||||    
T  16639890 ctttgattatgtggaatatgtggtgttcgaaaaacaaacaagttttggataatattcagccagatatgccctcgatggtcg 16639810  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 27026105 - 27026069
Alignment:
Q  222 ctttgattatgtggaatatttggtgtacaagaaacaa 258  Q
    ||||||||||||| |||||||||||||||||||||||    
T  27026105 ctttgattatgtgaaatatttggtgtacaagaaacaa 27026069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 3241478 - 3241429
Alignment:
Q  227 attatgtggaatatttggtgtacaagaaacaaactagtttttgacaatat 276  Q
    ||||||||||||||||||||||||| |||||   |||||||||| |||||    
T  3241478 attatgtggaatatttggtgtacaaaaaacatgttagtttttgataatat 3241429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 19145952 - 19145910
Alignment:
Q  216 ttgcacctttgattatgtggaatatttggtgtacaagaaacaa 258  Q
    |||||||||||||||||||  ||||||| ||||||||||||||    
T  19145952 ttgcacctttgattatgtgtgatatttgatgtacaagaaacaa 19145910  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 26487187 - 26487241
Alignment:
Q  216 ttgcacctttgattatgtggaatatttggtgtacaagaaacaaactagtttttga 270  Q
    |||| ||||| || ||||||||||||||||| ||||||||||| ||| |||||||    
T  26487187 ttgctcctttaatcatgtggaatatttggtgcacaagaaacaagctaatttttga 26487241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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