View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7415_low_36 (Length: 281)
Name: NF7415_low_36
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 67 - 275
Target Start/End: Original strand, 1565565 - 1565773
Alignment:
| Q |
67 |
attatttttcttctcttgttttgatttaactgattctgatcatgtaacatctgcagatgcgtgctgctgtgaaaaatgtggcagaatattttccaactgc |
166 |
Q |
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| T |
1565565 |
attatttttcttctcttgttttgatttaactgattctgatcatgtaacatctgcagatgcgtgctgcggtgaaaaatgtggcagaatattttccaactgc |
1565664 |
T |
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| Q |
167 |
aataattagcggaagaagtcgtgaaaaggtagctgaagaattctactatgaaataaaactgttatcttgtacttcatttttctcttttatgtttactaac |
266 |
Q |
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| T |
1565665 |
aataattagcggaagaagtcgtgaaaaggtagctgaagaattctactatgaaataaaactgttatcttgtacttcatttttctcttttatgcttactaac |
1565764 |
T |
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| Q |
267 |
acctccata |
275 |
Q |
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|||| |||| |
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| T |
1565765 |
acctgcata |
1565773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 1565532 - 1565567
Alignment:
| Q |
19 |
tttctaactttgtaaaaagagtgtatttctagcatt |
54 |
Q |
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| T |
1565532 |
tttctaactttgtaaaaagagtgtgtttctagcatt |
1565567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 12908760 - 12908656
Alignment:
| Q |
96 |
ctgattctgatcatgtaacatctgcagatgcgtgctgctgtgaaaaatgtggcagaatattttccaactgcaataattagcggaagaagtcgtgaaaagg |
195 |
Q |
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| T |
12908760 |
ctgattctgatctggtaagctctgcagatgcgtgctgctgttaaaaaggtggcagagtatttcccaacagcaataattagcggaagaagtcgcgacaagg |
12908661 |
T |
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| Q |
196 |
tagct |
200 |
Q |
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||||| |
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| T |
12908660 |
tagct |
12908656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 13309554 - 13309668
Alignment:
| Q |
97 |
tgattctgatcatgtaacatctgcagatgcgtgctgctgtgaaaaatgtggcagaatattttccaactgcaataattagcggaagaagtcgtgaaaaggt |
196 |
Q |
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||||||||||| |||| |||||||||| |||||||||| ||||| || ||||| |||||| |||| |||||| | | |||||||||||| ||||| |
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| T |
13309554 |
tgattctgatctggtaaggtctgcagatgtgtgctgctgttaaaaaggtcgcagagtattttacaacaacaataacttgtctaagaagtcgtgacaaggt |
13309653 |
T |
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| Q |
197 |
agctgaagaattcta |
211 |
Q |
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| T |
13309654 |
agttaaaaaattcta |
13309668 |
T |
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