View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7415_low_37 (Length: 278)
Name: NF7415_low_37
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 263
Target Start/End: Original strand, 44495177 - 44495425
Alignment:
| Q |
15 |
tatactatgcccaggaaaatgtaaataaaaatgctttatgtacccaaatttcatatatttttgcattttaaataaaaggttatatgttattgtatatgca |
114 |
Q |
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| T |
44495177 |
tatactatgcccaggaaaatgtaaataaaaatgctttatgtatccaaatttcatatatttttgcattttaaataaaaggttatatgttattgtatatgca |
44495276 |
T |
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| Q |
115 |
tgtttcaggataatcaggataaaatgactagaccgacaggcacctgcaattacaaggtgatcatagaaacaagctgccgttctccacaatatacaacaga |
214 |
Q |
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| T |
44495277 |
tgtttcaggataatcaggataaaatgactagaccgacaggcacctgcaattacaaggtgatcatagaaacaagctgccgttctccacaatatacaacaga |
44495376 |
T |
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| Q |
215 |
tagaatcagtatttcatttggagatgctcatggctctgaggttcttttt |
263 |
Q |
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| T |
44495377 |
tagaatcagtatttcatttggagatgctcatggctctgaggttcttttt |
44495425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 258
Target Start/End: Original strand, 44467658 - 44467758
Alignment:
| Q |
158 |
ctgcaattacaaggtgatcatagaaacaagctgccgttctccacaatatacaacagatagaatcagtatttcatttggagatgctcatggctctgaggtt |
257 |
Q |
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| T |
44467658 |
ctgcgattacaaggtgaccatagcaacaagctgcaaatctcctttatctacaaaagatgaaatcagtattttatttggagatgctgatggctctgaggtt |
44467757 |
T |
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| Q |
258 |
c |
258 |
Q |
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| T |
44467758 |
c |
44467758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 44489248 - 44489327
Alignment:
| Q |
183 |
acaagctgccgttctccacaatatacaacagatagaatcagtatttcatttggagatgctcatggctctgaggttctttt |
262 |
Q |
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| T |
44489248 |
acaagctgcaattctccagcatatacaacagatcaaatcagtcttttatttggagatgatcttggctctaaggttctttt |
44489327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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