View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7415_low_39 (Length: 268)
Name: NF7415_low_39
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 31 - 250
Target Start/End: Complemental strand, 36363341 - 36363122
Alignment:
| Q |
31 |
ttaattgaagtgtgattccctattttagccaaattttctattatggtcactctatttttaattggcaattttgattctccatttccataattttgaccat |
130 |
Q |
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| T |
36363341 |
ttaattgaagtttgattccctattttagccaaattttctattatggtcactctatttttaattggcaatttt-attctccatttccataattttgaccat |
36363243 |
T |
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| Q |
131 |
tcaatttaatgatgtgacaataaattagatcaaaatggtgtcttataagg-tgttaaattaagtcgtgaccgattatagaaaatcaaaataagatcaatt |
229 |
Q |
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| T |
36363242 |
tcaatttaatgatgtgacaataaattagatcaaaatggtgtcttatagggttgttaaattaagtcgtgatggatcatagaaaatcaaaataagatggatt |
36363143 |
T |
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| Q |
230 |
gaaataattaaatacagaaag |
250 |
Q |
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| T |
36363142 |
gaaataattaaatacagaaag |
36363122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 47474968 - 47475011
Alignment:
| Q |
115 |
ccataattttgaccattcaatttaatgatgtgacaataaattag |
158 |
Q |
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| T |
47474968 |
ccataattttaatcatttaatttaatgatgtgacaataaattag |
47475011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 40404371 - 40404412
Alignment:
| Q |
119 |
aattttgaccattcaatttaatgatgtgacaataaattagat |
160 |
Q |
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| T |
40404371 |
aattttgaccatccaatttaatgacgtgacaatatattagat |
40404412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 6168837 - 6168797
Alignment:
| Q |
117 |
ataattttgaccattcaatttaatgatgtgacaataaatta |
157 |
Q |
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| T |
6168837 |
ataattttaaccatccaatttaatgacgtgacaataaatta |
6168797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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