View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7415_low_4 (Length: 649)

Name: NF7415_low_4
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7415_low_4
NF7415_low_4
[»] chr2 (6 HSPs)
chr2 (8-230)||(44909736-44909973)
chr2 (247-441)||(44910171-44910369)
chr2 (70-146)||(14106064-14106140)
chr2 (69-144)||(43822042-43822117)
chr2 (535-649)||(44910376-44910480)
chr2 (247-314)||(44916342-44916409)
[»] chr6 (7 HSPs)
chr6 (66-144)||(24977771-24977849)
chr6 (66-144)||(24976340-24976418)
chr6 (71-144)||(12770773-12770846)
chr6 (71-142)||(12766760-12766831)
chr6 (69-142)||(3894855-3894928)
chr6 (69-144)||(12800105-12800180)
chr6 (71-125)||(12777047-12777101)
[»] chr3 (7 HSPs)
chr3 (66-142)||(16724876-16724952)
chr3 (71-146)||(24835069-24835144)
chr3 (69-142)||(18177746-18177819)
chr3 (71-144)||(20204893-20204966)
chr3 (71-148)||(22261736-22261813)
chr3 (71-148)||(22266686-22266763)
chr3 (75-142)||(35269852-35269919)
[»] chr1 (5 HSPs)
chr1 (69-145)||(9826454-9826530)
chr1 (69-144)||(31279278-31279353)
chr1 (69-142)||(4449635-4449708)
chr1 (70-145)||(9812058-9812133)
chr1 (69-145)||(9751435-9751510)
[»] chr5 (1 HSPs)
chr5 (69-144)||(40235003-40235078)
[»] chr4 (2 HSPs)
chr4 (69-144)||(39936153-39936228)
chr4 (70-143)||(28745642-28745715)
[»] scaffold0432 (1 HSPs)
scaffold0432 (69-145)||(5820-5896)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 4e-92; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 44909736 - 44909973
Alignment:
Q  8 tagcagagacaagaggaaagcgtttaggtatttgtaatatttatttggatacagaaataacaaatcagagtggcgcagcggaagcgtggtgggcccataa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44909736 tagcagagacaagaggaaagcgtttaggtatttgtaatatttatttggatacaaaaataacaaatcagagtggcgcagcggaagcgtggtgggcccataa 44909835  T
Q  108 cccacaggtccctggatcgaaaccaggctctgataaattctttctt---------------ttccttatatattttgggtctgttattggcattttactg 192  Q
    |||||||||||||||||||||||||||||||||||||||||| |||               || |||||||||||||||||||||| |||||||||||||    
T  44909836 cccacaggtccctggatcgaaaccaggctctgataaattcttcctttttctttctaccatctttcttatatattttgggtctgttactggcattttactg 44909935  T
Q  193 cataatcagcttcgtttttagcatttcgcatgatattt 230  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44909936 cataatcagcttcgtttttagcatttcgcatgatattt 44909973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 247 - 441
Target Start/End: Original strand, 44910171 - 44910369
Alignment:
Q  247 ttgatggaattatgctgcataccatgagataaagttttggctcatttcaatttgtatacaattttcaggaatcaaaaagactagtggaaaatttgtatac 346  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44910171 ttgatggaattatcctgcataccatgagataaagttttggctcatttcaatttgtatacaattttcaggaatcaaaaagactagtggaaaatttgtattc 44910270  T
Q  347 aattttcatgag----ataagtaatttcaaactacaatattatattatattatggtatgacatatacaaatcataagcttctatttacatattggtatg 441  Q
    |||  |    ||    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44910271 aataatgcaaagcagtataagtaatttcaaactacaatattatattatattatggtatggcatatacaaatcataagcttctatttacatattggtatg 44910369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 14106140 - 14106064
Alignment:
Q  70 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaatt 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14106140 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaatt 14106064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 43822042 - 43822117
Alignment:
Q  69 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43822042 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 43822117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 535 - 649
Target Start/End: Original strand, 44910376 - 44910480
Alignment:
Q  535 gtagtacataaaagccataaatatgcttacagtagtctctatatcctcattgaacaattatgcccaatctcattgatttgaagtttgagacagatgaaac 634  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||| |||||    
T  44910376 gtagtaaataaaagccataaatatgcttacagtagtctctatatcctcattgaacaattat----------attgatttgaagtttgagacagacgaaac 44910465  T
Q  635 gaaccgccggcatac 649  Q
    |||||||||||||||    
T  44910466 gaaccgccggcatac 44910480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 44916342 - 44916409
Alignment:
Q  247 ttgatggaattatgctgcataccatgagataaagttttggctcatttcaatttgtatacaattttcag 314  Q
    |||||| | |||||||||||||||||||||||| || | |||||||||||||||||||||| ||||||    
T  44916342 ttgatgaatttatgctgcataccatgagataaaattctagctcatttcaatttgtatacaactttcag 44916409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 24977849 - 24977771
Alignment:
Q  66 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24977849 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 24977771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 24976418 - 24976340
Alignment:
Q  66 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24976418 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctttgataaa 24976340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 12770846 - 12770773
Alignment:
Q  71 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12770846 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggattgaaaccaggctctgataaa 12770773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 12766831 - 12766760
Alignment:
Q  71 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 142  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12766831 atcagagtggcgcagcggaagcatggtgggcccataacccataggtccctggatcgaaaccaggctctgata 12766760  T

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Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 3894928 - 3894855
Alignment:
Q  69 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  3894928 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccttggatagaaaccagactctgata 3894855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 12800180 - 12800105
Alignment:
Q  69 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 144  Q
    |||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  12800180 aaatcagagtggtgcggcggaagcgtggtgggcccataacctacaggtccctggatcgaaaccaggctctaataaa 12800105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 12777101 - 12777047
Alignment:
Q  71 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatc 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12777101 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatc 12777047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 16724952 - 16724876
Alignment:
Q  66 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16724952 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 16724876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 24835144 - 24835069
Alignment:
Q  71 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaatt 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24835144 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaatt 24835069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 18177819 - 18177746
Alignment:
Q  69 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18177819 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 18177746  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 20204893 - 20204966
Alignment:
Q  71 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20204893 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 20204966  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 22261736 - 22261813
Alignment:
Q  71 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaattct 148  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  22261736 atcaaagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctttgataagttct 22261813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 22266763 - 22266686
Alignment:
Q  71 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaattct 148  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  22266763 atcaaagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctttgataagttct 22266686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 35269919 - 35269852
Alignment:
Q  75 gagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 142  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35269919 gagtggcacagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 35269852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 9826530 - 9826454
Alignment:
Q  69 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9826530 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat 9826454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 31279353 - 31279278
Alignment:
Q  69 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31279353 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 31279278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 4449708 - 4449635
Alignment:
Q  69 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4449708 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 4449635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 9812133 - 9812058
Alignment:
Q  70 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat 145  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  9812133 aatcagagtggcgcagcggaagcgtggtgggcccataacccataggtccctggattaaaaccaggctctgataaat 9812058  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 9751510 - 9751435
Alignment:
Q  69 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat 145  Q
    |||| |||||||||||| |||||||||||||| | ||||| ||||| |||||||||||||| ||| |||| ||||||    
T  9751510 aaattagagtggcgcag-ggaagcgtggtgggtctataactcacagatccctggatcgaaatcagactctaataaat 9751435  T

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Target: chr5 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 40235078 - 40235003
Alignment:
Q  69 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40235078 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 40235003  T

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Target: chr4 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 39936153 - 39936228
Alignment:
Q  69 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39936153 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 39936228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 28745715 - 28745642
Alignment:
Q  70 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28745715 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataa 28745642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 5896 - 5820
Alignment:
Q  69 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat 145  Q
    ||||||||||| |||||||||||||||||||| |||||||||| |||| ||||||||||||| ||||||| ||||||    
T  5896 aaatcagagtgacgcagcggaagcgtggtgggtccataacccataggttcctggatcgaaactaggctctaataaat 5820  T

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