View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7415_low_42 (Length: 255)
Name: NF7415_low_42
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_low_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 10752363 - 10752255
Alignment:
| Q |
134 |
caatcgattctctttaatatattcatgtgtgtctcgtattttatcatatattcactcatctaaatcaacattatacttaagattgaatcggggtcgattt |
233 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10752363 |
caatcgattctctttaatatattcatttgtgtctcgtattttatcatatattcactcatctaaatcaacattatacttaagattgaatcggggtcgattt |
10752264 |
T |
|
| Q |
234 |
tttcttttc |
242 |
Q |
| |
|
||||||||| |
|
|
| T |
10752263 |
tttcttttc |
10752255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10752496 - 10752433
Alignment:
| Q |
1 |
ctagaaatgttctatgagtagtcttcttgtgttgagttgtaaccggtgaatagacatgagtttt |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10752496 |
ctagaaatgttctatgagtagtcttcttgtgttgagttgtaaccggtggatagacatgagtttt |
10752433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 2983650 - 2983741
Alignment:
| Q |
139 |
gattctctttaatatattcatgtgtgtctcgtattttatcatatattcactcatctaaatcaacattatacttaagattgaatcggggtcga |
230 |
Q |
| |
|
||||||||||||||| ||||| ||||||| |||||| |||||||||||||||||||||||| |||| ||||| |||||||| | ||||||| |
|
|
| T |
2983650 |
gattctctttaatatgttcatttgtgtcttatattttctcatatattcactcatctaaatcaccattgtacttgagattgaaccagggtcga |
2983741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 2992595 - 2992643
Alignment:
| Q |
17 |
agtagtcttcttgtgttgagttgtaaccggtgaatagacatgagttttg |
65 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| || ||||| ||||||| |
|
|
| T |
2992595 |
agtagtcttcttgtgttgagttctaactggtggatggacattagttttg |
2992643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 18358980 - 18359028
Alignment:
| Q |
17 |
agtagtcttcttgtgttgagttgtaaccggtgaatagacatgagttttg |
65 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| || ||||| ||||||| |
|
|
| T |
18358980 |
agtagtcttcttgtgttgagttctaactggtggatggacattagttttg |
18359028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University