View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7415_low_51 (Length: 239)
Name: NF7415_low_51
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3585304 - 3585089
Alignment:
| Q |
1 |
caagttatttgcaaaatgagcttagacaatgatcatcctcaaggttagtagtactatatagtacttattttaattagttttcaatgttttaattttgatt |
100 |
Q |
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| T |
3585304 |
caagttatttgcaaaatgagcttaaacaatgatcatcctcaaggttagtagtactatat---------tttaattagttttcaatgttttaattttgatt |
3585214 |
T |
|
| Q |
101 |
ggagaaagaaagaaattagtgttataatgcaatgatgacttaggttgagctgccatgtgctaatgtagagtccaacaagaactgggggaaacttgtttcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3585213 |
ggagaaagaaagaaattagtgttataatgcaatgatgacttaggttgagctgccatgtgctaatgtagagtccaacaagaactgggggaaacttgtttcg |
3585114 |
T |
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| Q |
201 |
gccacgttggcagctgctgttattg |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3585113 |
gccacgttggcagctgctgttattg |
3585089 |
T |
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