View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7415_low_57 (Length: 217)

Name: NF7415_low_57
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7415_low_57
NF7415_low_57
[»] chr7 (7 HSPs)
chr7 (15-201)||(46630269-46630455)
chr7 (115-198)||(46638593-46638676)
chr7 (116-198)||(46619876-46619958)
chr7 (29-102)||(46638090-46638163)
chr7 (37-104)||(46176022-46176089)
chr7 (38-99)||(46642634-46642695)
chr7 (38-96)||(46619381-46619439)
[»] chr3 (1 HSPs)
chr3 (15-201)||(18375629-18375815)
[»] chr1 (1 HSPs)
chr1 (15-71)||(15769080-15769136)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 46630269 - 46630455
Alignment:
Q  15 aatatgaagggcacaaatatatgaggaaagtaaaccatagcaaggatttgtctaaaaacataaaacagaattcgacaaagttgacagttaaaccaggatc 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46630269 aatataaagggcacaaatatatgaggaaagtaaaccatagcaaggatttgtctaaaaacataaaacagaattcgacaaagttgacagttaaaccaggatc 46630368  T
Q  115 ctctcggtcttctaactttcgagacgctgaccaaaatttttgtggttcagttagtcatcagcagaatggaagttcaactgcttcttc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46630369 ctctcggtcttctaactttcgagacgctgaccaaaatttttgtggttcagttagtcatcagcagaatggaagttcaactgcttcttc 46630455  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 46638593 - 46638676
Alignment:
Q  115 ctctcggtcttctaactttcgagacgctgaccaaaatttttgtggttcagttagtcatcagcagaatggaagttcaactgcttc 198  Q
    |||||||||||||| ||||| ||| ||  |||||||| |||| ||| ||||||||||||||||||||| || ||||||| ||||    
T  46638593 ctctcggtcttctagctttctagatgcaaaccaaaatgtttgcggtccagttagtcatcagcagaatgaaaattcaacttcttc 46638676  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 46619876 - 46619958
Alignment:
Q  116 tctcggtcttctaactttcgagacgctgaccaaaatttttgtggttcagttagtcatcagcagaatggaagttcaactgcttc 198  Q
    ||||||||||||  ||||||||| ||  |||||||| |||||||| ||||||||||||| ||||||| || ||||||| ||||    
T  46619876 tctcggtcttcttgctttcgagatgcaaaccaaaatgtttgtggtccagttagtcatcatcagaatgaaaattcaacttcttc 46619958  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 46638090 - 46638163
Alignment:
Q  29 aaatatatgaggaaagtaaaccatagcaaggatttgtctaaaaacataaaacagaattcgacaaagttgacagt 102  Q
    ||||||| |||||| ||||||||||||||||||  | |||||| ||| |||||||| ||||||||||| |||||    
T  46638090 aaatatacgaggaaggtaaaccatagcaaggatgcgcctaaaagcattaaacagaagtcgacaaagttaacagt 46638163  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 46176089 - 46176022
Alignment:
Q  37 gaggaaagtaaaccatagcaaggatttgtctaaaaacataaaacagaattcgacaaagttgacagtta 104  Q
    |||||||||||||||| |||||||| ||||||||| ||| |||| |||| | ||||||||| ||||||    
T  46176089 gaggaaagtaaaccatggcaaggatatgtctaaaagcattaaacggaatgcaacaaagttggcagtta 46176022  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 46642695 - 46642634
Alignment:
Q  38 aggaaagtaaaccatagcaaggatttgtctaaaaacataaaacagaattcgacaaagttgac 99  Q
    ||||| ||||| |||||||||||| ||||||||| ||| || | ||||||||||||||||||    
T  46642695 aggaatgtaaaacatagcaaggatatgtctaaaagcattaagcggaattcgacaaagttgac 46642634  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 46619381 - 46619439
Alignment:
Q  38 aggaaagtaaaccatagcaaggatttgtctaaaaacataaaacagaattcgacaaagtt 96  Q
    ||||| ||||||||||||||||||  | |||||| ||| |||||||| |||||||||||    
T  46619381 aggaaggtaaaccatagcaaggatgcgcctaaaaccattaaacagaagtcgacaaagtt 46619439  T

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Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 18375815 - 18375629
Alignment:
Q  15 aatatgaagggcacaaatatatgaggaaagtaaaccatagcaaggatttgtctaaaaacataaaacagaattcgacaaagttgacagttaaaccaggatc 114  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||  |||||||| ||| |||||||||||||||||||| |||||||||| |||||     
T  18375815 aatataaagggcacaaatatacgaggaaagtaaaccatagcaaggatacgtctaaaagcattaaacagaattcgacaaagttaacagttaaacaaggatt 18375716  T
Q  115 ctctcggtcttctaactttcgagacgctgaccaaaatttttgtggttcagttagtcatcagcagaatggaagttcaactgcttcttc 201  Q
    ||| |||||||||||||||||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18375715 ctcccggtcttctaactttcgagatgctaaccaaattttttgtggttcagttactcatcagcagaatggaagttcaactgcttcttc 18375629  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 15769136 - 15769080
Alignment:
Q  15 aatatgaagggcacaaatatatgaggaaagtaaaccatagcaaggatttgtctaaaa 71  Q
    ||||| ||||||  ||||||| |||||||||||||||||||| |||| |||||||||    
T  15769136 aatataaagggcgaaaatatacgaggaaagtaaaccatagcacggatatgtctaaaa 15769080  T

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