View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7415_low_58 (Length: 212)
Name: NF7415_low_58
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 8533793 - 8533615
Alignment:
| Q |
23 |
ttacatgagagaatctgctcccagttggacgcatttatttgagtttgaattaaggatccccaagtgatatatatacctgagtttaagtggtatttaccaa |
122 |
Q |
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| T |
8533793 |
ttacatgagagaatctgctcccagttggacgcattcatttgagtttgaattaaggatcccccagtgatatatatacctgagtttaagtggtatttatcaa |
8533694 |
T |
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| Q |
123 |
cactttttgttgatttggtatagttgttcattgacataaatatttaggacacaatataaaatacactatttcatctcac |
201 |
Q |
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| T |
8533693 |
cacttttagttgatttggtatagttgttcattgacataaatatttaggatacaatataaaatacactatttcatttcac |
8533615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 8553247 - 8553202
Alignment:
| Q |
149 |
ttcattgacataaatatttaggacacaatataaaatacactatttcat |
196 |
Q |
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| T |
8553247 |
ttcattgacataaatatctaggacac--tataaaatatactatttcat |
8553202 |
T |
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