View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7415_low_7 (Length: 538)
Name: NF7415_low_7
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 41 - 495
Target Start/End: Complemental strand, 37719233 - 37718781
Alignment:
| Q |
41 |
ggttattggatagtaaaattaaaggatgtttgcaggagctgtctgaatcaagaagcaatttattcaaagctgatgtagattatcactataaaatttatta |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37719233 |
ggttattggatagtaaaattaaaggatgtttgcaggagctgtctgaatcaggaagcaatttattcaaagctgatgtagattatcactataaaatttatta |
37719134 |
T |
|
| Q |
141 |
cttccggtcttattctaggttttcattataaaattggtgataatcttgattctggtgtagattttgttaatgttgatgttagaatttcgatttgatttgt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37719133 |
cttccggtcttattctaggttttcattataaaattggtgataatcttgattctggtgtagattttgttaatgttgatgttagaatttcgatttgatttgt |
37719034 |
T |
|
| Q |
241 |
gtctgatagagtgaccgtttacaaattttatagtgaagccatagagggatttcaaaattgtagtcagtagtagtcaaacctatacggaatcagtcataga |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37719033 |
gtctgatagagtgaccgtttacaaattttatagtg--gccatagagggatttcaaaattgtagtcagtagtagtcaaacctgtacggaatcagtcataga |
37718936 |
T |
|
| Q |
341 |
atgggtttcaaaattatagaaattgaatttgatatttttagttgtttgaaatttagtatcaactatgagtcattcagtttgatgaaatctactttgcatt |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37718935 |
atgggtttcaaaattatagaaattgaatttgatatttttagttgtttgaaatttagtatcaactatgagtcattcagtttgatgaaatctactttgcatt |
37718836 |
T |
|
| Q |
441 |
ataattgttcgataaaaagatcacaagaacttacttgaggcaagcctcattctta |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37718835 |
ataattgttcgataaaaagatcacaagaacttacttgaggcaagcctcattctta |
37718781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 128 - 277
Target Start/End: Complemental strand, 30440564 - 30440415
Alignment:
| Q |
128 |
ataaaatttattacttccggtcttattctaggttttcattataaaattggtgataatcttgattctggtgtagattttgttaatgttgatgttagaattt |
227 |
Q |
| |
|
|||||| ||||||| || |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |
|
|
| T |
30440564 |
ataaaacttattacatctggtctttttctaggttttcactataacattggtgataatcttgattctggtgtagattttgttgatgttga-gttataattt |
30440466 |
T |
|
| Q |
228 |
cgatttgatttgtgtctgatagagtgaccgtttacaaatt-ttatagtgaa |
277 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
30440465 |
cgatctgatttgtgtctgatagagtgatcgtatacaaattcttatagtgaa |
30440415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 41 - 495
Target Start/End: Original strand, 4435925 - 4436379
Alignment:
| Q |
41 |
ggttattggatagtaaaattaaaggatgtttgcaggagctgtctgaatcaagaagcaatttattcaaagctgatgtagattatcactataaaatttatta |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4435925 |
ggttattggatagtaaaattaaaggatgtttgcaggagctgtctgaatcaggaagcaatttattcaaagctgatgtagattatcactataaaatttatta |
4436024 |
T |
|
| Q |
141 |
cttccggtcttattctaggttttcattataaaattggtgataatcttgattctggtgtagattttgttaatgttgatgttagaatttcgatttgatttgt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
4436025 |
cttccggtcttattctaggttttcattataaaattggtgataatcttgattctgatgtagattttgttaatgttgatgttagaattttgatttgctttgt |
4436124 |
T |
|
| Q |
241 |
gtctgatagagtgaccgtttacaaattttatagtgaagccatagagggatttcaaaattgtagtcagtagtagtcaaacctatacggaatcagtcataga |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
4436125 |
gtctgatagagtgaccgtttacaaattttatagtgaagccatagagggatttcaaaattgtagttagtagtagtcaaacctgtacggaatcagtcataga |
4436224 |
T |
|
| Q |
341 |
atgggtttcaaaattatagaaattgaatttgatatttttagttgtttgaaatttagtatcaactatgagtcattcagtttgatgaaatctactttgcatt |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4436225 |
atgggtttcaaaattatagaaattgaatttgatattattagttgtttgaaatttagtatcaactatgagtcattcagtttgatgaaatctactttgcatt |
4436324 |
T |
|
| Q |
441 |
ataattgttcgataaaaagatcacaagaacttacttgaggcaagcctcattctta |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4436325 |
ataattgttcgataaaaagatcacaagaacttacttgaggcaatcctcattctta |
4436379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 41 - 466
Target Start/End: Original strand, 4092147 - 4092582
Alignment:
| Q |
41 |
ggttattggatagtaaaattaaaggatgtttgcaggagctgtctgaatcaagaagcaatttattcaaagctgatgtagattatcactataaaatttatta |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
4092147 |
ggttattggatagtaaaattaaaggatgtttgcagtagctgtctaaatcaggaagcaatttattcaaggctgatgtagattttcactataaaatttatta |
4092246 |
T |
|
| Q |
141 |
cttccggtcttattctaggttttcattataaaattggtgataatcttgattctggtgtagattttgttaatgttgatgttagaatttcgatttgatttgt |
240 |
Q |
| |
|
| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4092247 |
catctggtcttattctaggttttcattatgaaattggtgataatcttgattctggtgtagattttgttaatattgatgttagaatttcgatttgatttgt |
4092346 |
T |
|
| Q |
241 |
gtctgatagagtgaccgtttacaaattttatagtga-----------agccatagagggatttcaaaattgtagtcagtagtagtcaaacctatac-gga |
328 |
Q |
| |
|
|| |||| ||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||| |||||||||||||| ||| ||| |
|
|
| T |
4092347 |
gtttgat--agtgaccgtatacaaattttatagtgaaacctggaatcagccataggggggtttcaaaattgtagtcaatagtagtcaaacctgtactgga |
4092444 |
T |
|
| Q |
329 |
atcagtcatagaatgggtttcaaaattatagaaattgaatttgatatttttagttgtttgaaatttagtatcaactatgagtcattcagtttgatgaaat |
428 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4092445 |
gtcagccatagaaggggtttcaaaattatagaaattgaatgtgatatttttagttgtttgaaatttagtatcaaccatgagtcattcagtttgatgaaat |
4092544 |
T |
|
| Q |
429 |
ctactttgcattataattgttcgataaaaagatcacaa |
466 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4092545 |
ctactttgcattctaattgttcgataaaaagatcacaa |
4092582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 41 - 495
Target Start/End: Complemental strand, 46594913 - 46594459
Alignment:
| Q |
41 |
ggttattggatagtaaaattaaaggatgtttgcaggagctgtctgaatcaagaagcaatttattcaaagctgatgtagattatcactataaaatttatta |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46594913 |
ggttattggatagtaaaattaaaggatgtttgcaggagctgtctgaatcaggaagcaatttattcaaagctgatgtagattatcactataaaatctatta |
46594814 |
T |
|
| Q |
141 |
cttccggtcttattctaggttttcattataaaattggtgataatcttgattctggtgtagattttgttaatgttgatgttagaatttcgatttgatttgt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
46594813 |
cttccggtcttattctaggttttcattataaaattggtgataatcttgattctggtgtagattttgttaatgttgatgttagaattttgatttgctttgt |
46594714 |
T |
|
| Q |
241 |
gtctgatagagtgaccgtttacaaattttatagtgaagccatagagggatttcaaaattgtagtcagtagtagtcaaacctatacggaatcagtcataga |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
46594713 |
gtctgatagagtgaccgtttacaaattttatagtgaagccatagagggatttcaaaattgtagttagtagtagtcaaacctgtacggaatcagtcataga |
46594614 |
T |
|
| Q |
341 |
atgggtttcaaaattatagaaattgaatttgatatttttagttgtttgaaatttagtatcaactatgagtcattcagtttgatgaaatctactttgcatt |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46594613 |
atgggtttcaaaattatagaaattgaatttgatattattagttgtttgaaatttagtatcaactatgagtcattcagtttgatgaaatctactttgcatt |
46594514 |
T |
|
| Q |
441 |
ataattgttcgataaaaagatcacaagaacttacttgaggcaagcctcattctta |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46594513 |
ataattgttcgataaaaagatcacaagaacttacttgaggcaatcctcattctta |
46594459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 390 - 480
Target Start/End: Original strand, 25490131 - 25490221
Alignment:
| Q |
390 |
aatttagtatcaactatgagtcattcagtttgatgaaatctactttgcattataattgttcgataaaaagatcacaagaacttacttgagg |
480 |
Q |
| |
|
|||| |||||||| || ||||||||| |||||||||| |||||||||||||||| ||| ||||||| |||||| |||||| | |||||| |
|
|
| T |
25490131 |
aattcagtatcaattacaagtcattcactttgatgaaagctactttgcattataaccgtttgataaaaggatcactagaactaagttgagg |
25490221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 41 - 494
Target Start/End: Original strand, 47521409 - 47521879
Alignment:
| Q |
41 |
ggttattggatagtaaaattaaaggatgtttgcaggagctgtctgaatcaagaagcaatttattcaaagctgatgtagattatcactataaaatttatta |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
47521409 |
ggttattggatagtaaaattaaaggatgtttgcaggagctgtctgaatcaggaagcaatttattcaaagttgatgtagattttcactataaaatttatta |
47521508 |
T |
|
| Q |
141 |
cttccggtcttattctaggttttcattataaaattggtgataatcttgattctggtgtagattttgttaatgttgatgttagaatttcgatttgatttgt |
240 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
47521509 |
catatggtcttattctaggttttcattataaaattggtgataatcttgattctggtgtagattttgttaatgttgatgttagaattttgatttgattcgt |
47521608 |
T |
|
| Q |
241 |
gtctgatagagtgaccgtttacaaattttatagtga----------------agccatagagggatttcaaaattgtagtcagtagtagtcaaacctata |
324 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
47521609 |
gtctgatagagtgaccgtatacaaattttatagttaaacctgtactggaatcagccatagaggggtttcaaaattgtagtcagtagtagtcaaacctgta |
47521708 |
T |
|
| Q |
325 |
c-ggaatcagtcatagaatgggtttcaaaattatagaaattgaatttgatatttttagttgtttgaaatttagtatcaactatgagtcattcagtttgat |
423 |
Q |
| |
|
| ||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47521709 |
ctggaatcaaccatagaaggggtttcaaaattatagaaattgaatgtgatatttttagttgtttgaaatttagtatcaactatgagtcattcagtttgat |
47521808 |
T |
|
| Q |
424 |
gaaatctactttgcattataattgttcgataaaaagatcacaagaacttacttgaggcaagcctcattctt |
494 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47521809 |
gaaatctactttgcattctaattgttcgataaaaaaatcacaagaacttacttgaggcaagcctcattctt |
47521879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 306 - 495
Target Start/End: Original strand, 26496407 - 26496597
Alignment:
| Q |
306 |
agtagtagtcaaacctatac-ggaatcagtcatagaatgggtttcaaaattatagaaattgaatttgatatttttagttgtttgaaatttagtatcaact |
404 |
Q |
| |
|
|||||||||||||||| ||| |||||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26496407 |
agtagtagtcaaacctgtactggaatcagccattgaatgggtttcaaaattgtagaaattgaatgtgatatttttagttgtttgaaatttagtatcaact |
26496506 |
T |
|
| Q |
405 |
atgagtcattcagtttgatgaaatctactttgcattataattgttcgataaaaagatcacaagaacttacttgaggcaagcctcattctta |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26496507 |
atgagtcattcagtttgatgaaatctactttgcattttaattgttctataaaaagatcacaagaacttacttgaggcaagtctcattctta |
26496597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 26496200 - 26496273
Alignment:
| Q |
41 |
ggttattggatagtaaaattaaaggatgtttgcaggagctgtctgaatcaagaagcaatttattcaaagctgat |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26496200 |
ggtttttggatagtaaaattaaaggatgtttgcaggagctgtctgaatcaggaagcaatttattcaaagctgat |
26496273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 26496296 - 26496346
Alignment:
| Q |
146 |
ggtcttattctaggttttcattataaaattggtgataatcttgattctggt |
196 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
26496296 |
ggtcttattctaggttttcactataaaattggggataatcttgattctggt |
26496346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 26496351 - 26496391
Alignment:
| Q |
228 |
cgatttgatttgtgtctgatagagtgaccgtttacaaattt |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26496351 |
cgatttgatttgtgtctgatagagtgaccgtatacaaattt |
26496391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 483
Target Start/End: Complemental strand, 38016358 - 38016318
Alignment:
| Q |
443 |
aattgttcgataaaaagatcacaagaacttacttgaggcaa |
483 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38016358 |
aattgttcaataaaaagatcacaagaacttacttgaggcaa |
38016318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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