View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7416_high_3 (Length: 409)
Name: NF7416_high_3
Description: NF7416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7416_high_3 |
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| [»] scaffold0317 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 54425416 - 54425164
Alignment:
| Q |
18 |
gaaccatgatttgcaaacaagcatcgcaccacgccattgatcgtcaaagctgagtcgagataggatattgatgaggcactcacgagtcaactcgccccac |
117 |
Q |
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| T |
54425416 |
gaaccatgatttgcaaacaagcaacgaaccgcgccattgatcttcaaagctgagtcgagataggatgttgatgaggcactcacgagtcaactcgccccac |
54425317 |
T |
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| Q |
118 |
tcggcttcgctttcttcttccatttttgttccttctattgtttggatttagacggaactgcgtccctagtaatagatagatcatttttagactccaatcc |
217 |
Q |
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| T |
54425316 |
tcggcttcgctttctacttccatttttgttccttctattgtttggatttagacggaactgcgtccattgtaatagata----atttttagac-----tcc |
54425226 |
T |
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| Q |
218 |
aacacgtgcgatgcacgg--gtttttgtagagtttcatatataactataaaatatcaaattggtc |
280 |
Q |
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| T |
54425225 |
aacacgtgcgatgcacggttttttttgtagagtttcatat---agtataaaatatcaaattggtc |
54425164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 282 - 389
Target Start/End: Complemental strand, 54424980 - 54424866
Alignment:
| Q |
282 |
tattattaatcgtagaggtggtccagaccgtccttcctgggtcattagagg-------gatgctgtaaaaaactgcaacttatttgatatgcctcttcat |
374 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
54424980 |
tattattaatcgtagaggtggtccagaccgtccttcgtggctcattagaggattccaagatgttgtaaaagactgcaacttatttgatatgcctcttcat |
54424881 |
T |
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| Q |
375 |
ggttaccaattcaca |
389 |
Q |
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| T |
54424880 |
ggttgccaattcaca |
54424866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 54430332 - 54430430
Alignment:
| Q |
18 |
gaaccatgatttgcaaacaagcatcgcaccacgccattgatcgtcaaagctgagtcgagataggatattgatgaggcactcacgagtcaactcgcccca |
116 |
Q |
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| T |
54430332 |
gaaccatgatttacatacaagcattgcaccgcgccattgatcttcaacggtgagtcgaatgaagatgttgatgaggcaatctcgagataactcgcccca |
54430430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 389
Target Start/End: Original strand, 20119878 - 20119976
Alignment:
| Q |
298 |
ggtggtccagaccgtccttcctgggtcattagagg-------gatgctgtaaaaaactgcaacttatttgatatgcctcttcatggttaccaattcaca |
389 |
Q |
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| T |
20119878 |
ggtggtccagaccgtccttcttggctcattagaggcttccaagatgctgttaaagactgcaacttatttgatatgcctctccacagttaccaattcaca |
20119976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 37381911 - 37381841
Alignment:
| Q |
222 |
cgtgcgatgcacgggtttttgtagagtttcatatataactataaaatatcaaattggtcatattattaatcgtagag |
298 |
Q |
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| T |
37381911 |
cgtgcgatgcacgtgtttttgtagagtttcatat------ataaaatatcaaattgactatattattaatcgtagag |
37381841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0317 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0317
Description:
Target: scaffold0317; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 19789 - 19833
Alignment:
| Q |
218 |
aacacgtgcgatgcacgggtttttgtagagtttcatatataactat |
263 |
Q |
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| T |
19789 |
aacacgtgcgatgcacaggtttt-gtagagtttcatatataactat |
19833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 30694356 - 30694392
Alignment:
| Q |
222 |
cgtgcgatgcacgggtttttgtagagtttcatatataa |
259 |
Q |
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| T |
30694356 |
cgtgcgatgcacgggtttt-gtagagtttcatatataa |
30694392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 15107429 - 15107465
Alignment:
| Q |
262 |
ataaaatatcaaattggtcatattattaatcgtagag |
298 |
Q |
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| T |
15107429 |
ataaaatatcaaattggctatattattaatcgtagag |
15107465 |
T |
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