View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7416_low_2 (Length: 472)
Name: NF7416_low_2
Description: NF7416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7416_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 11 - 455
Target Start/End: Original strand, 41447519 - 41447963
Alignment:
| Q |
11 |
agaatatacttttggtaaaattgatttatgtttggtttcctttttctttgagttgtttaactcctttgatttgttaatggcattcttttgcttctgtgta |
110 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41447519 |
agaatatacttttggtaaaattgatttttgtttggtttccttcctcttcgagttgtttaactcctttgatttgttaatggcattcttttgcttctgtgta |
41447618 |
T |
|
| Q |
111 |
tgtttttggtacacagatatgagatgaatttatgtaactctggtttctaagtttcaataataaaaaagttccttaatttctttaccttgttaattttgat |
210 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41447619 |
tgtttttggtacatagatatgagatgaatctatgtaactctggtttctaagtttcaataataaaaaagttccttaatttctttaccttgttaattttgat |
41447718 |
T |
|
| Q |
211 |
gctaatttgatttgtctaaagatattggctccaatagtaatagtactttcataacgtggtattcatgaggcttaatcttgaatcttttctccctaaagac |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
41447719 |
gctagtttgatttgtctaaagatattggctccaatagtaatagtactttcataatgtggtattcatgaggcttaaccttgaatcttttctctctaaagac |
41447818 |
T |
|
| Q |
311 |
gccaaattcgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaatgtatgtttacttttcaagtgatattcatcaaagttttaac |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
41447819 |
gccaaattcgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaatgtatgcttactttacaagtgatattcatcaaagttttaac |
41447918 |
T |
|
| Q |
411 |
tggcagggttaaattcaaacaataaggtttccgttgtatcagtac |
455 |
Q |
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| T |
41447919 |
tggcagggttaaattcaaacaataaggtttccgctgtatcagtac |
41447963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 86 - 299
Target Start/End: Original strand, 41457815 - 41458027
Alignment:
| Q |
86 |
aatggcattcttttgcttctgtgtatgtttttggtacacagatatgagatgaatttatgtaactctggtttctaagtttcaataataaaaaagttcctta |
185 |
Q |
| |
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|||| ||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||| |||||||||||||||||||||| | |||| |||||||| |
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| T |
41457815 |
aatgacattcttttgcttctgtttatgtttatggtacacaaatatgagatgaacttatgtagctctggtttctaagtttcaatattcaaaa-gttcctta |
41457913 |
T |
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| Q |
186 |
atttctttaccttgttaattttgatgctaatttgatttgtctaaagatattggctccaatagtaatagtactttcataacgtggtattcatgaggcttaa |
285 |
Q |
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||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41457914 |
attcctttaccttgttaagtttgatgctaatttgttttgtctaaagatattggctccaatagtaatagtactttcataacgtggtgttcatgaggcttaa |
41458013 |
T |
|
| Q |
286 |
tcttgaatcttttc |
299 |
Q |
| |
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|||||||||||| |
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|
| T |
41458014 |
cgttgaatcttttc |
41458027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 319 - 453
Target Start/End: Original strand, 41458199 - 41458335
Alignment:
| Q |
319 |
cgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaatgtatgt---ttacttttcaagtgatattcatcaaagttttaactggca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| || ||||||||||||| |
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| T |
41458199 |
cgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaata-atgtatattacttttcatgtgatattcatgaatgttttaactggca |
41458297 |
T |
|
| Q |
416 |
gggttaaattcaaacaataaggtttccgttgtatcagt |
453 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| |
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| T |
41458298 |
gggttaaattcaaacaataaggtttccgctgtatcagt |
41458335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 41457705 - 41457797
Alignment:
| Q |
11 |
agaatatacttttggtaaaattgatttatgtttggtttcctttttctttgagttgtttaactcctttgatttgttaatggcattcttttgctt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41457705 |
agaatatacttttggtaaaattgatttatgtttggtttccttcctcttcgagttgtttaactcctttgatttgttaatgacattcttttgctt |
41457797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 398
Target Start/End: Original strand, 41441238 - 41441431
Alignment:
| Q |
204 |
ttttgatgctaatttgatttgtctaaagatattggctccaatagtaatagtactttcataacgtggtattcatgaggcttaatcttgaatcttttctccc |
303 |
Q |
| |
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|||| ||| ||||||| |||||| |||||||||| || |||||||||||||||| || | |||||||| ||| ||| || ||||||| ||||||| |
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| T |
41441238 |
ttttaatgataatttgttttgtcaaaagatattgacttatatagtaatagtactttgatcaagtggtattgttgatgctcaaccttgaatattttctcaa |
41441337 |
T |
|
| Q |
304 |
taaagacgccaaattcgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaatgtatgtttacttttcaagtgatattcat |
398 |
Q |
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| T |
41441338 |
taaaggtgccaaatttgattcatttcattgtataaacacaattgaagatccggtttgatagctcaatgtatg-ttacatttcatgtgatattcat |
41441431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 86 - 425
Target Start/End: Complemental strand, 16418838 - 16418518
Alignment:
| Q |
86 |
aatggcattcttttgcttctgtgtatgtttttggtacacagatatgagatgaatttatgtaactctggtttctaagtttcaataataaaaaagttcctta |
185 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| || |||||||||||| |
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| T |
16418838 |
aatgacattcttttgcttctgtttatgtttttggtacacaaatatgagatgaacttatgtagctctggtttctaagtttcaat-attcaaaagttcctta |
16418740 |
T |
|
| Q |
186 |
atttctttaccttgttaattttgatgctaatttgatttgtctaaagatattggctccaatagtaatagtactttcataacgtggtattcatgaggcttaa |
285 |
Q |
| |
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||| |||||||||||||| ||||||||| ||||| ||||||||||||||||||||| ||||||||||||| ||| | ||||| | | ||| |
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| T |
16418739 |
attcctttaccttgttaagtttgatgctgatttgttttgtctaaagatattggctcaaatagtaatagtaattt---------gcgttcataa--cgtaa |
16418651 |
T |
|
| Q |
286 |
tcttgaatcttttctccctaaagacgccaaattcgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaatgtatgtttacttttc |
385 |
Q |
| |
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||||||| |||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
16418650 |
ccttgaatattttctccctcaagatgccaaattcgatgaa-------gtatgaacacacttgaagatctagtttgatagctcgatgtatgtttacttttc |
16418558 |
T |
|
| Q |
386 |
aagtgatattcatcaaagttttaactggcagggttaaatt |
425 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
16418557 |
aagtgattttcatgaaagttttaactggcagggttaaatt |
16418518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 16418950 - 16418858
Alignment:
| Q |
11 |
agaatatacttttggtaaaattgatttatgtttggtttcctttttctttgagttgtttaactcctttgatttgttaatggcattcttttgctt |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16418950 |
agaatatacttttggtaaaattgatttatgtttggtttccttcctcttcgagttgtttaactcctttgatttgttaatgatgttcttttgctt |
16418858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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