View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7417_high_1 (Length: 729)
Name: NF7417_high_1
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7417_high_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 696; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 6 - 729
Target Start/End: Complemental strand, 33653661 - 33652938
Alignment:
| Q |
6 |
gaagaatatagaaagagaagagaagagctaatgatgcagcgacagaaaagaattgcggaaagaagtgcgttgaagaagactggaacagaaactaagactt |
105 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33653661 |
gaagaaaatagaaagagaagagaagagctaatgatgcagcgacagaaaagaattgcggaaagaagtgcgttgaagaagactggaacagaagctaagactt |
33653562 |
T |
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| Q |
106 |
ctttgacttctgcaaggaaagggaatcctaagattcatccatctaatggagagactaagaaactcaacaaaccagtccttaggagttccaccatcgatcg |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33653561 |
ctttgacttctgcaaggaaagggaatcctaagattcatccatctaatggagagactaagaaacacaacaaaccagtccttaggagttccaccatcgatcg |
33653462 |
T |
|
| Q |
206 |
ccttgcaactgcccgagtaactcagcagaaggtttcacctagtcaagtaaattcaggtccaaccaagaagccttccttgaaggcaaataagctggtacct |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33653461 |
ccttgcaactgcccgagtaactcagcagaaggtttcacctagtcaagtaaattcaggtccaaccaagaagccttccttgaaggcaaataagctggtacct |
33653362 |
T |
|
| Q |
306 |
ttgcagaagaagcagctccaaaaacaagtgaaatcttcaaatcataaagaagacgcacataaaacaaaagggaaagttctttccaagagtggcacaaaga |
405 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33653361 |
ttgcagaagaagcagctccaaaaagaagtgaaatcttcaaatcataaagaagacgcacataaaacaaaagggaaagttctttccaagagtggcacaaaga |
33653262 |
T |
|
| Q |
406 |
ctaagaatgaaatcaaaacctcagtagggttgcctgtcaaacctgatgcaacagaagctgttgaacaaagcaacaacaatcatggtttgaaagacattgg |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33653261 |
ctaagaatgaaatcaaaacctcagtagggttgcctgtcaaacctgatgcaacagaagctgttgaacaaagcaacaataatcatggtttgaaagacattgg |
33653162 |
T |
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| Q |
506 |
agtgttgaccaaggcatcaccggagaaacatttaagacatttgacttcagaaagagaaatcatgcatgaaaatattggccaacttcgcacagactcgtct |
605 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33653161 |
agtattgaccaaggcatcaccggagaaacatttaagacatttgacttcagaaagagaaatcatgcatgaaaatattggccaacttcgcacagactcgtct |
33653062 |
T |
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| Q |
606 |
ttgtcaaatcatgatcatgcaatgagaggaagtcagtctagaaatgaagaagtatcatacaagttaccttcacttcatggcgataataaccaacctcgac |
705 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33653061 |
ttgtcaaatcatgatcatgcaatgagaggaagtcagtctagaaatgaagaagtatcatacaagttaccttcacttcatggtgataataaccaacctcgac |
33652962 |
T |
|
| Q |
706 |
ataatactgacatgatcacaaatt |
729 |
Q |
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|||||||||||||||||||||||| |
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| T |
33652961 |
ataatactgacatgatcacaaatt |
33652938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 726
Target Start/End: Complemental strand, 2626559 - 2626506
Alignment:
| Q |
673 |
cttcacttcatggcgataataaccaacctcgacataatactgacatgatcacaa |
726 |
Q |
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||||||||| ||| ||||||||||||| |||| |||||||| |||||||||||| |
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| T |
2626559 |
cttcacttcgtggtgataataaccaacttcgaaataatactaacatgatcacaa |
2626506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 726
Target Start/End: Complemental strand, 22977462 - 22977409
Alignment:
| Q |
673 |
cttcacttcatggcgataataaccaacctcgacataatactgacatgatcacaa |
726 |
Q |
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||||||||| ||| ||||||||||||| |||| |||||||| |||||||||||| |
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| T |
22977462 |
cttcacttcgtggtgataataaccaacttcgaaataatactaacatgatcacaa |
22977409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 726
Target Start/End: Original strand, 23810940 - 23810993
Alignment:
| Q |
673 |
cttcacttcatggcgataataaccaacctcgacataatactgacatgatcacaa |
726 |
Q |
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||||||||| ||| ||||||||||||| |||| |||||||| |||||||||||| |
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| T |
23810940 |
cttcacttcgtggtgataataaccaacttcgaaataatactaacatgatcacaa |
23810993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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