View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7417_high_22 (Length: 260)
Name: NF7417_high_22
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7417_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 48476552 - 48476308
Alignment:
| Q |
1 |
cgagtatgtcagaaaaggcatatactcacccaagtacgacgtttatagttttggagttcttctcttgcaaatcataagtggaaacaagacttcatgttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48476552 |
cgagtatgtcagaaaaggcatatactcacccaagtacgacgtttatagttttggagttcttctcttgcaaatcataagtggaaacaagacttcatgttat |
48476453 |
T |
|
| Q |
101 |
tacggcccacatgaaaatatgaacgttttggaatacgtaagctatctatctcttctctttttagaaaagtcttttctaatgacatgtgacaaaatttcac |
200 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48476452 |
tacggcccacatgaaaatatgaaccttttggaatatgtaagctatctatctcttctctttttagaaaagtcttttctaatgacatgtgacaaaatttcac |
48476353 |
T |
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| Q |
201 |
acttctgttttttgtactagtttaacatattttttcatactatat |
245 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
48476352 |
acatctgttttttgtactagtttaacatattttttcatactatat |
48476308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 48483863 - 48483653
Alignment:
| Q |
2 |
gagtatgtcagaaaaggcatatactcacccaagtacgacgtttatagttttggagttcttctcttgcaaatcataagtggaaacaagacttcatgttatt |
101 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |
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| T |
48483863 |
gagtatgtcaaaaaaggcatatactcacccaagtacgacgtttatagttttggagttcttctcttgcaaatcataagtggaaagaggacttcacattatt |
48483764 |
T |
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| Q |
102 |
acggcccacatgaaaatatgaacgttttggaatacgtaagctatctatctcttctctttttagaaaagtc-ttttctaatgacatgtgacaaaatttcac |
200 |
Q |
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| T |
48483763 |
acggcacacatgaaaatatgaatcttttggaatacgtaagttatcta-----tctgttttaagagaagtctttttctaatgtcacgtgaaataattttac |
48483669 |
T |
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| Q |
201 |
acttctgttttttgta |
216 |
Q |
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||||||||||| |||| |
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| T |
48483668 |
acttctgttttctgta |
48483653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 48467690 - 48467545
Alignment:
| Q |
1 |
cgagtatgtcagaaaaggcatatactcacccaagtacgacgtttatagttttggagttcttctcttgcaaatcataagtggaaacaagacttcatgttat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||||||||||||||| ||||| | ||||||| | ||| |
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| T |
48467690 |
cgagtatgtcagaaaaggcatatactccccgaagtatgatgtttatagttttggagtccttctcttgcaaatcataagcggaaagaggacttcacgatat |
48467591 |
T |
|
| Q |
101 |
tacggcccacatgaaaatatgaacgttttggaatacgtaagctatc |
146 |
Q |
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| T |
48467590 |
tacggcccacatgaaaatatgaaccttttggaatatgtaagttatc |
48467545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 48869742 - 48869830
Alignment:
| Q |
47 |
agttttggagttcttctcttgcaaatcataagtggaaacaagacttcatgttattacggcccacatgaaaatatgaacgttttggaata |
135 |
Q |
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||||||| ||| ||||||||| |||||||||| ||||| | ||||||| | ||||||||||||||||||||||||||| |||||||||| |
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| T |
48869742 |
agttttgcagtccttctcttggaaatcataagcggaaagaggacttcacgatattacggcccacatgaaaatatgaaccttttggaata |
48869830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 48885428 - 48885516
Alignment:
| Q |
47 |
agttttggagttcttctcttgcaaatcataagtggaaacaagacttcatgttattacggcccacatgaaaatatgaacgttttggaata |
135 |
Q |
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||||||| ||| ||||||||| |||||||||| ||||| | ||||||| | ||||||||||||||||||||||||||| |||||||||| |
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| T |
48885428 |
agttttgcagtccttctcttggaaatcataagcggaaagaggacttcacgatattacggcccacatgaaaatatgaaccttttggaata |
48885516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 38820192 - 38820337
Alignment:
| Q |
1 |
cgagtatgtcagaaaaggcatatactcacccaagtacgacgtttatagttttggagttcttctcttgcaaatcataagtggaaacaagacttcatgttat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| || ||||||||||||||||| ||||||||||||||||||| ||||| | |||||| ||| |
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| T |
38820192 |
cgagtatgtcagaaaaggcatatactccccgaagtatgatgtttatagttttggagtccttctcttgcaaatcataaacggaaagagaacttcacaatat |
38820291 |
T |
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| Q |
101 |
tacggcccacatgaaaatatgaacgttttggaatacgtaagctatc |
146 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||| |||| |
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| T |
38820292 |
tacggcccacatgaaaatatgaaccttttggaatatgtaagttatc |
38820337 |
T |
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