View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7417_high_32 (Length: 203)

Name: NF7417_high_32
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7417_high_32
NF7417_high_32
[»] chr6 (12 HSPs)
chr6 (80-190)||(17952057-17952167)
chr6 (81-190)||(35175878-35175987)
chr6 (81-134)||(4641355-4641408)
chr6 (81-172)||(24662480-24662571)
chr6 (81-134)||(2968139-2968192)
chr6 (81-134)||(3018534-3018587)
chr6 (81-134)||(17950561-17950614)
chr6 (81-134)||(29077328-29077381)
chr6 (81-134)||(30639611-30639664)
chr6 (79-133)||(29114815-29114869)
chr6 (81-134)||(29112300-29112353)
chr6 (79-131)||(35174389-35174441)
[»] chr4 (24 HSPs)
chr4 (80-190)||(39921493-39921603)
chr4 (82-190)||(39189383-39189491)
chr4 (80-190)||(39083638-39083748)
chr4 (81-190)||(42880770-42880879)
chr4 (81-190)||(43779882-43779991)
chr4 (81-190)||(5484540-5484649)
chr4 (81-190)||(44994302-44994411)
chr4 (86-190)||(32652104-32652208)
chr4 (81-173)||(5486051-5486143)
chr4 (82-172)||(6999300-6999390)
chr4 (80-186)||(44558512-44558618)
chr4 (81-170)||(2350542-2350631)
chr4 (67-134)||(10372777-10372844)
chr4 (80-134)||(10762580-10762634)
chr4 (121-170)||(13451015-13451064)
chr4 (81-134)||(39923045-39923098)
chr4 (81-172)||(25995112-25995203)
chr4 (79-134)||(44992806-44992861)
chr4 (81-132)||(47941811-47941862)
chr4 (81-131)||(35997808-35997858)
chr4 (80-134)||(42879274-42879328)
chr4 (81-134)||(44794831-44794884)
chr4 (124-172)||(15450416-15450464)
chr4 (78-134)||(44792931-44792987)
[»] chr7 (19 HSPs)
chr7 (77-190)||(45463666-45463779)
chr7 (81-190)||(34690995-34691104)
chr7 (82-161)||(30109710-30109789)
chr7 (81-190)||(4322587-4322696)
chr7 (1-80)||(41820532-41820612)
chr7 (81-190)||(48303664-48303773)
chr7 (121-172)||(48302191-48302242)
chr7 (80-186)||(46996721-46996827)
chr7 (81-134)||(8423352-8423405)
chr7 (81-134)||(35344361-35344414)
chr7 (79-172)||(47341719-47341812)
chr7 (79-134)||(4321036-4321091)
chr7 (80-133)||(46994659-46994712)
chr7 (81-129)||(40785591-40785639)
chr7 (81-172)||(38613514-38613605)
chr7 (80-134)||(8421415-8421469)
chr7 (81-134)||(30108565-30108618)
chr7 (81-149)||(34784067-34784135)
chr7 (96-172)||(34785112-34785188)
[»] chr8 (10 HSPs)
chr8 (81-190)||(40020650-40020759)
chr8 (87-190)||(28433731-28433834)
chr8 (81-133)||(31201215-31201267)
chr8 (122-172)||(12515125-12515175)
chr8 (90-172)||(23811565-23811647)
chr8 (81-133)||(33748332-33748384)
chr8 (79-134)||(31823514-31823569)
chr8 (79-134)||(42897845-42897900)
chr8 (80-134)||(31199484-31199538)
chr8 (80-172)||(9184382-9184474)
[»] chr2 (15 HSPs)
chr2 (81-190)||(28246663-28246772)
chr2 (85-188)||(11023030-11023132)
chr2 (78-190)||(38148492-38148605)
chr2 (80-134)||(41180-41234)
chr2 (80-130)||(15372498-15372548)
chr2 (81-186)||(11315354-11315459)
chr2 (85-134)||(39560-39609)
chr2 (81-134)||(11021533-11021586)
chr2 (81-186)||(37417273-37417378)
chr2 (81-134)||(41706539-41706592)
chr2 (81-133)||(33193-33245)
chr2 (80-134)||(28248213-28248267)
chr2 (80-161)||(10716925-10717006)
chr2 (81-134)||(42880849-42880902)
chr2 (81-133)||(37418808-37418860)
[»] chr5 (12 HSPs)
chr5 (81-193)||(42620775-42620887)
chr5 (80-186)||(38596867-38596973)
chr5 (81-172)||(1344814-1344905)
chr5 (79-134)||(40330553-40330608)
chr5 (81-186)||(18728621-18728726)
chr5 (76-113)||(32087509-32087546)
chr5 (77-134)||(32089963-32090020)
chr5 (81-134)||(32835876-32835929)
chr5 (79-134)||(35291046-35291101)
chr5 (81-186)||(35395333-35395438)
chr5 (81-134)||(42619289-42619342)
chr5 (124-172)||(1343264-1343312)
[»] chr1 (13 HSPs)
chr1 (81-190)||(5783364-5783473)
chr1 (79-134)||(47269527-47269582)
chr1 (80-134)||(11152544-11152598)
chr1 (80-133)||(31803739-31803792)
chr1 (81-134)||(45379085-45379138)
chr1 (81-134)||(5784905-5784958)
chr1 (81-134)||(27940608-27940661)
chr1 (81-134)||(33679259-33679312)
chr1 (81-134)||(33685319-33685372)
chr1 (81-134)||(35478087-35478140)
chr1 (81-134)||(35480046-35480099)
chr1 (81-186)||(42134482-42134587)
chr1 (77-134)||(46638878-46638935)
[»] chr3 (17 HSPs)
chr3 (81-180)||(41944576-41944675)
chr3 (81-172)||(40963398-40963489)
chr3 (78-186)||(23774149-23774257)
chr3 (121-172)||(30501157-30501208)
chr3 (79-134)||(40508982-40509037)
chr3 (72-186)||(48633868-48633982)
chr3 (81-134)||(40508493-40508546)
chr3 (81-134)||(41021074-41021127)
chr3 (81-134)||(48635411-48635464)
chr3 (81-173)||(33850982-33851074)
chr3 (81-172)||(26447723-26447814)
chr3 (78-113)||(45898440-45898475)
chr3 (81-172)||(51454283-51454374)
chr3 (81-134)||(18430342-18430395)
chr3 (81-134)||(23888843-23888896)
chr3 (79-172)||(41946099-41946192)
chr3 (81-134)||(45257291-45257344)
[»] scaffold0477 (1 HSPs)
scaffold0477 (81-134)||(6705-6758)


Alignment Details
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 80 - 190
Target Start/End: Complemental strand, 17952167 - 17952057
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgt 179  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  17952167 tgagtgaaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgt 17952068  T
Q  180 ctatcaatttc 190  Q
    | |||||||||    
T  17952067 ccatcaatttc 17952057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 35175987 - 35175878
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    |||||||||||||||||||||| ||||||||||||| || |||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  35175987 gagtgaaccatcaatttcgtccttgaattttcagggatcggccaaattcgtctccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtc 35175888  T
Q  181 tatcaatttc 190  Q
     |||||||||    
T  35175887 catcaatttc 35175878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 4641355 - 4641408
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  4641355 gagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgtccc 4641408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 24662480 - 24662571
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    ||||||| |||||| ||||||| ||||||| || |  | || ||||||||||||| ||||||||||||||| |||||||||  |||||||||    
T  24662480 gagtgaatcatcaacttcgtccttgaatttgcacgaatatgtcaaattcgtcccccaatttaacgaaatatcaaaatagtccatgaatttgt 24662571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 2968139 - 2968192
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||||||||||| |||||| |||||||| |||||| |||||||||||||    
T  2968139 gagtgaaccatcaatttagtccctcaattttcacgggtctcccaaattcgtccc 2968192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 3018587 - 3018534
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||||||||| |||||||||||||||||| | ||| ||||| ||||||||    
T  3018587 gagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaacttcgtccc 3018534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 17950561 - 17950614
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||||||||||||| |||||||||||| | ||||| ||||| ||||||||    
T  17950561 gagtgaaccatcaatttcatccctgaatttttacgggtcggccaacttcgtccc 17950614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 29077328 - 29077381
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||||||||| |||||||||||||||||| | ||| |||||||| |||||    
T  29077328 gagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccc 29077381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 30639611 - 30639664
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||| |||||| |||||||||||||||||| ||||| |||||||| |||||    
T  30639611 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaaattagtccc 30639664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 29114869 - 29114815
Alignment:
Q  79 ttgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtcc 133  Q
    |||||||||||||||| || ||||||||||||||| | ||| |||||||| ||||    
T  29114869 ttgagtgaaccatcaagttagtccctgaattttcacgcgtcggccaaattagtcc 29114815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 29112300 - 29112353
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||||||||| || ||||||||||||||| | ||| |||||||| |||||    
T  29112300 gagtgaaccatcaagttagtccctgaattttcacgcgtcggccaaattagtccc 29112353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 35174389 - 35174441
Alignment:
Q  79 ttgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgt 131  Q
    ||||||||| |||||| |||||||||||||||| | ||||| ||||| |||||    
T  35174389 ttgagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgt 35174441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 80 - 190
Target Start/End: Original strand, 39921493 - 39921603
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgt 179  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  39921493 tgagtgaaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgt 39921592  T
Q  180 ctatcaatttc 190  Q
    | |||||||||    
T  39921593 ccatcaatttc 39921603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 39189383 - 39189491
Alignment:
Q  82 agtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtct 181  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||     
T  39189383 agtgaaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtcc 39189482  T
Q  182 atcaatttc 190  Q
    |||||||||    
T  39189483 atcaatttc 39189491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 80 - 190
Target Start/End: Original strand, 39083638 - 39083748
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgt 179  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||    
T  39083638 tgagtgaaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtccctaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgt 39083737  T
Q  180 ctatcaatttc 190  Q
    | |||||||||    
T  39083738 ccatcaatttc 39083748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 42880879 - 42880770
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  42880879 gagtgaaccatcaattttgtccctgaattttcaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtc 42880780  T
Q  181 tatcaatttc 190  Q
     |||||||||    
T  42880779 catcaatttc 42880770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 43779991 - 43779882
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  43779991 gagtgaaccttcaatttcgtccctgaattttcaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtc 43779892  T
Q  181 tatcaatttc 190  Q
     |||||||||    
T  43779891 catcaatttc 43779882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 5484540 - 5484649
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    |||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  5484540 gagtgaaccatcaatttcgtccatgaatttttaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtc 5484639  T
Q  181 tatcaatttc 190  Q
     |||||||||    
T  5484640 catcaatttc 5484649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 44994411 - 44994302
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    ||||| || ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  44994411 gagtgtactatcaatttcatccctaaattttcaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtc 44994312  T
Q  181 tatcaatttc 190  Q
     |||||||||    
T  44994311 catcaatttc 44994302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 32652104 - 32652208
Alignment:
Q  86 aaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtctatca 185  Q
    |||||||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||||||| |||||||||  ||||||||||||||||| ||||    
T  32652104 aaccatcaatttcgtcactgaattttcagggttcggccaaattcgtcccccaatttaacgaaatatcaaaatagtccttgaatttgtttgacgtccatca 32652203  T
Q  186 atttc 190  Q
    |||||    
T  32652204 atttc 32652208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 5486143 - 5486051
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtt 173  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||||||||| ||||||||| |||||||||||    
T  5486143 gagtgaaccatcaatttcgtccctgaatttttaggggtcggccaaattcatccctaaatttaacgaaatatcaaaatagtccctgaatttgtt 5486051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 6999390 - 6999300
Alignment:
Q  82 agtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    |||||| |||||||||||||| ||||||| || |  || |||||||||||||   ||||||| ||||||| ||||||||||||||||||||    
T  6999390 agtgaatcatcaatttcgtccttgaatttgcacgaatcggccaaattcgtccttcaatttaatgaaatatcaaaatagtctctgaatttgt 6999300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 44558618 - 44558512
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgt 179  Q
    ||||||||||||||| ||||||| |||||||||| ||||| ||||||||| ||||  ||||   |||||||| ||  ||||| ||||||||||  |||||    
T  44558618 tgagtgaaccatcaacttcgtccttgaattttcacgggtcggccaaattcatccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacgt 44558519  T
Q  180 ctatcaa 186  Q
    | |||||    
T  44558518 ccatcaa 44558512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 170
Target Start/End: Complemental strand, 2350631 - 2350542
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaattt 170  Q
    ||||||||||||||||| ||||||||||||||| ||||| |||||||| |||||  ||||   |||||||| ||  || |||||||||||    
T  2350631 gagtgaaccatcaatttagtccctgaattttcatgggtcggccaaatttgtccctcaattatgcgaaatatcaatttaatctctgaattt 2350542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 10372844 - 10372777
Alignment:
Q  67 ttaatattggaattgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||  || ||||||||||||||| |||||||||||||||||| | ||| |||||||| |||||    
T  10372844 ttaatattataaatgagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccc 10372777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 10762580 - 10762634
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||||||||| |||||||||||||||||| | ||| |||||||| |||||    
T  10762580 tgagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccc 10762634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 13451064 - 13451015
Alignment:
Q  121 gccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaattt 170  Q
    ||||||||||||||| ||||||||||||||| |||||||||  |||||||    
T  13451064 gccaaattcgtcccccaatttaacgaaatatcaaaatagtccttgaattt 13451015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 39923098 - 39923045
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||||||||||||||||||||||||| |  |||| ||||| ||||||||    
T  39923098 gagtgaaccatcaatttcgtccctgaatttttacaggtcggccaacttcgtccc 39923045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 25995203 - 25995112
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    ||||||| |||||| ||||||| | ||||| || |  || ||||||||  ||||| ||||||||||||||| ||||||||  ||||||||||    
T  25995203 gagtgaatcatcaacttcgtccataaatttgcacgaatcggccaaatttatcccccaatttaacgaaatatcaaaatagttcctgaatttgt 25995112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 44992806 - 44992861
Alignment:
Q  79 ttgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||| |||||| |||||||||||||||| | ||||| ||||| ||||||||    
T  44992806 ttgagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtccc 44992861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 47941811 - 47941862
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtc 132  Q
    ||||||||||||||||| ||||||||||||| | ||||| | ||||||||||    
T  47941811 gagtgaaccatcaatttagtccctgaatttttacgggtcggtcaaattcgtc 47941862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 35997858 - 35997808
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgt 131  Q
    ||||||| |||||| || ||||||||||||||| ||||| |||||||||||    
T  35997858 gagtgaatcatcaactttgtccctgaattttcacgggtcggccaaattcgt 35997808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 42879274 - 42879328
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||| |||||| |||||||||||||||| | ||||| ||||| ||||||||    
T  42879274 tgagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtccc 42879328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 44794884 - 44794831
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||||||||||| |||||||||||||||   ||| | ||||||||||||    
T  44794884 gagtgaaccatcaatttagtccctgaattttcacacgtcggtcaaattcgtccc 44794831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 15450464 - 15450416
Alignment:
Q  124 aaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    ||||| |||||  ||||||||||||||| ||||||||| ||||||||||    
T  15450464 aaatttgtccctcaatttaacgaaatatcaaaatagtccctgaatttgt 15450416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 44792931 - 44792987
Alignment:
Q  78 attgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||| || |||||| || ||||||||||| ||| ||||| ||||||||||||||    
T  44792931 attgagttaatcatcaacttagtccctgaattatcacgggtcggccaaattcgtccc 44792987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 4e-46; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 77 - 190
Target Start/End: Original strand, 45463666 - 45463779
Alignment:
Q  77 aattgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttga 176  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  45463666 aattgagtgaaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtccctaaatttaacgaaatatcaaaatagtccctgaatttgtttga 45463765  T
Q  177 cgtctatcaatttc 190  Q
    |||| |||||||||    
T  45463766 cgtccatcaatttc 45463779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 34690995 - 34691104
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    |||| ||||||||||||| |||||||||||| |||| || |||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  34690995 gagtaaaccatcaatttcatccctgaatttttagggatcggccaaattcgtccccaaatttaacaaaatatcaaaatagtctctgaatttgtctgacgtc 34691094  T
Q  181 tatcaatttc 190  Q
     |||||||||    
T  34691095 catcaatttc 34691104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 30109789 - 30109710
Alignment:
Q  82 agtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtc 161  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  30109789 agtgaaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagtc 30109710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 4322696 - 4322587
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    |||| ||||||||||||||||||||||| ||||||| || |||||| |||||||| ||||||||||||||| ||||||||| ||||||||||||||| ||    
T  4322696 gagtaaaccatcaatttcgtccctgaatattcagggatcggccaaactcgtcccccaatttaacgaaatatcaaaatagtccctgaatttgtttgacatc 4322597  T
Q  181 tatcaatttc 190  Q
     |||||||||    
T  4322596 catcaatttc 4322587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 41820532 - 41820612
Alignment:
Q  1 gattaattagtattggaagttgtagtaatcatcttcatgttggaattagtagctgttagt-aattaattaatattggaatt 80  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  41820532 gattaattagtattggaagttgtagtaatcatcttcatcttggaattagtagctgttagtaaattaattaatattggaatt 41820612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 48303773 - 48303664
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    |||| ||||||||||||||||||||||||||||| | || | ||||| ||||| | |||||||| |||||| ||||||||| |||||||| |||||||||    
T  48303773 gagtaaaccatcaatttcgtccctgaattttcagcgatcggtcaaatccgtcctctaatttaacaaaatatcaaaatagtccctgaatttatttgacgtc 48303674  T
Q  181 tatcaatttc 190  Q
     |||||||||    
T  48303673 catcaatttc 48303664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 48302191 - 48302242
Alignment:
Q  121 gccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||||    
T  48302191 gccaaattcgtccctcaatttaacgaaatatcaaaatagtctctgaatttgt 48302242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 46996827 - 46996721
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgt 179  Q
    ||||||||||||||| |||||||||||||||||| | ||| ||||| ||||||||  ||||   |||||||| ||  ||||| ||||||||||  |||||    
T  46996827 tgagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaacttcgtccctcaattatgcgaaatatcaacttagtcactgaatttgtcagacgt 46996728  T
Q  180 ctatcaa 186  Q
    | |||||    
T  46996727 ccatcaa 46996721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 8423405 - 8423352
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||||||||||| ||||||||||||||| ||||| |||||||| |||||    
T  8423405 gagtgaaccatcaatttagtccctgaattttcacgggtcagccaaatttgtccc 8423352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 35344414 - 35344361
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||||||||||| ||||| ||||||||| ||||| ||||||||||||||    
T  35344414 gagtgaaccatcaatttagtccccgaattttcacgggtcagccaaattcgtccc 35344361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 47341812 - 47341719
Alignment:
Q  79 ttgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    |||||||||||||||| ||||||| |||||||||| ||||| ||||||||| ||||  ||||   |||||||| ||  ||||| ||||||||||    
T  47341812 ttgagtgaaccatcaaattcgtccttgaattttcacgggtcggccaaattcatccctcaattatgcgaaatatcaacttagtccctgaatttgt 47341719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 4321036 - 4321091
Alignment:
Q  79 ttgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||| |||||| |||||||||||||||||| ||||| ||||| ||||||||    
T  4321036 ttgagtgaatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtccc 4321091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 46994659 - 46994712
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtcc 133  Q
    |||||||| |||||| |||||||||||||||||| ||||| ||||| |||||||    
T  46994659 tgagtgaatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtcc 46994712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 40785639 - 40785591
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattc 129  Q
    ||||||| |||||||||||||| |||||||||| ||||| |||||||||    
T  40785639 gagtgaatcatcaatttcgtccttgaattttcacgggtcggccaaattc 40785591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 38613605 - 38613514
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    |||||||||||||| ||||||| | |||||||| ||||| ||||||||| ||||  ||||   |||||||| ||  ||||| ||||||||||    
T  38613605 gagtgaaccatcaaattcgtccttcaattttcacgggtcggccaaattcatccctcaattatgcgaaatatcaacttagtccctgaatttgt 38613514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 8421415 - 8421469
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||| |||||| || ||||||||||| ||| ||||| ||||||||||||||    
T  8421415 tgagtgaatcatcaacttagtccctgaattatcacgggtcggccaaattcgtccc 8421469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 30108565 - 30108618
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||| |||||| |||||||||||||||| | ||||| ||||| ||||||||    
T  30108565 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtccc 30108618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 34784067 - 34784135
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaat 149  Q
    ||||||| |||||| ||||||| ||||||| || |  || ||||||||||||| | |||||||||||||    
T  34784067 gagtgaatcatcaacttcgtccttgaatttgcacgaatcggccaaattcgtcctccaatttaacgaaat 34784135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 34785188 - 34785112
Alignment:
Q  96 ttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    |||||||||||||||  | |  || |||||| |||||| | || |||||||||||| ||||||||| ||||||||||    
T  34785188 ttcgtccctgaatttgtacgaatcggccaaagtcgtcctccaaattaacgaaatatcaaaatagtccctgaatttgt 34785112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 40020759 - 40020650
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  40020759 gagtgaaccatcaatttcgtccctgaatctttaggggtctgccaaattcgtccccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtc 40020660  T
Q  181 tatcaatttc 190  Q
     |||||||||    
T  40020659 catcaatttc 40020650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 28433834 - 28433731
Alignment:
Q  87 accatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtctatcaa 186  Q
    ||||||||||||||||||||||||||| || || ||||||||||||||  ||||||||||||||| ||||||||| |||||||||||||||||| ||| |    
T  28433834 accatcaatttcgtccctgaattttcaaggatcggccaaattcgtccctcaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtccatcga 28433735  T
Q  187 tttc 190  Q
    ||||    
T  28433734 tttc 28433731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 31201267 - 31201215
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtcc 133  Q
    ||||||||||||||||| ||||||||||||||| ||||| |||||||||||||    
T  31201267 gagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgtcc 31201215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 12515125 - 12515175
Alignment:
Q  122 ccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||||||||    
T  12515125 ccaaatttatcccctaatttaacgaaatattaaaatagtctctgaatttgt 12515175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 23811647 - 23811565
Alignment:
Q  90 atcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    ||||| ||||||||||||||  || || || ||||||||||||||| ||||| || |||||| |||||||||  |||||||||    
T  23811647 atcaacttcgtccctgaattcgcacggatcggccaaattcgtcccccaattttacaaaatatcaaaatagtccttgaatttgt 23811565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 33748332 - 33748384
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtcc 133  Q
    ||||||| |||||| |||||||||||||||||| ||||| ||||| |||||||    
T  33748332 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtcc 33748384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 31823569 - 31823514
Alignment:
Q  79 ttgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||| | |||||| |||||||||||||||||| ||||| ||||| ||||||||    
T  31823569 ttgagtggatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtccc 31823514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 42897900 - 42897845
Alignment:
Q  79 ttgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||||||||||| | ||||| |||||||| | ||||| ||||||||||||||    
T  42897900 ttgagtgaaccatcaaatccgtccttgaatttttacgggtcggccaaattcgtccc 42897845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 31199484 - 31199538
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||| |||||| || ||||||||||| ||| ||||| ||||||||||||||    
T  31199484 tgagtgaatcatcaacttagtccctgaattatcacgggtcggccaaattcgtccc 31199538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 9184382 - 9184474
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    |||||||| |||||||||||||| ||||||| || |  || |||||||||||| || || |   |||||||| ||| ||||| ||||||||||    
T  9184382 tgagtgaatcatcaatttcgtccttgaatttgcacgaatcggccaaattcgtcgcccaactacgcgaaatatcaaattagtccctgaatttgt 9184474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 28246663 - 28246772
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  28246663 gagtgaaccatcaatttcgtccctgaatttttaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagttcctgaatttgtttgacgtc 28246762  T
Q  181 tatcaatttc 190  Q
     |||||||||    
T  28246763 catcaatttc 28246772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 11023132 - 11023030
Alignment:
Q  85 gaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtctatc 184  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||| |||    
T  11023132 gaaccatcaatttcgtccctgaattttcaggg-tcggccaaattcgtcccccaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtccatc 11023034  T
Q  185 aatt 188  Q
    ||||    
T  11023033 aatt 11023030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 78 - 190
Target Start/End: Original strand, 38148492 - 38148605
Alignment:
Q  78 attgagtgaaccatcaatttcgtccctgaattttcaggggtctg-ccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttga 176  Q
    ||||||| ||||||||||||||||||||||||||||| | || | ||||||| |||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  38148492 attgagtaaaccatcaatttcgtccctgaattttcagagatcgggccaaatttgtcccccaatttaacgaaatatcaaaatagtccctgaatttgtttga 38148591  T
Q  177 cgtctatcaatttc 190  Q
    |||| |||||||||    
T  38148592 cgtccatcaatttc 38148605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 41234 - 41180
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||| |||||| |||||||||||||||||| ||||| ||||||||||||||    
T  41234 tgagtgaatcatcaacttcgtccctgaattttcacgggtcggccaaattcgtccc 41180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 15372498 - 15372548
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcg 130  Q
    |||||||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  15372498 tgagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcg 15372548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 11315459 - 11315354
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    ||||||| |||||| ||||||| | |||||| | |  || ||||||||||| ||| ||||||||||||||| ||||||||  ||||||||||  ||||||    
T  11315459 gagtgaatcatcaacttcgtccttaaatttttatgaatcggccaaattcgttccctaatttaacgaaatatcaaaatagttcctgaatttgtcagacgtc 11315360  T
Q  181 tatcaa 186  Q
     |||||    
T  11315359 catcaa 11315354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 39560 - 39609
Alignment:
Q  85 gaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||||||| ||||||||||||| | ||||| ||||||||||||||    
T  39560 gaaccatcaatttagtccctgaatttttacgggtcggccaaattcgtccc 39609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 11021533 - 11021586
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||| |||||| |||||||||||||||||| ||||| ||||| ||||||||    
T  11021533 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtccc 11021586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 37417273 - 37417378
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    |||||||||||||  ||||||| |||||||||| ||||| ||||||||| ||||  ||||   |||||||| ||  ||||| ||||||||||  ||||||    
T  37417273 gagtgaaccatcatattcgtccttgaattttcatgggtcggccaaattcatccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtc 37417372  T
Q  181 tatcaa 186  Q
     |||||    
T  37417373 catcaa 37417378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 41706539 - 41706592
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||||||||||| || |||||||||||| ||||| | ||||||||||||    
T  41706539 gagtgaaccatcaatttagttcctgaattttcacgggtcggtcaaattcgtccc 41706592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 33193 - 33245
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtcc 133  Q
    ||||||| |||||| |||||||||||||||||| ||||| ||||| |||||||    
T  33193 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtcc 33245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 28248267 - 28248213
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||| |||||| |||||||||||||||| | ||||| ||||| ||||||||    
T  28248267 tgagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtccc 28248213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 10717006 - 10716925
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtc 161  Q
    |||||||| |||||||||||| | |||||||  | |  |||| ||||||||||||  |||||||| |||||| |||||||||    
T  10717006 tgagtgaatcatcaatttcgttcatgaatttgtacgaatctgtcaaattcgtcccataatttaacaaaatatcaaaatagtc 10716925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 42880902 - 42880849
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||| |||||| |||||||||||||||| | ||||| | ||||||||||||    
T  42880902 gagtgaatcatcaacttcgtccctgaatttttacgggtcggtcaaattcgtccc 42880849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 37418860 - 37418808
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtcc 133  Q
    ||||||| |||||| ||||| | |||||||||| ||||| |||||||||||||    
T  37418860 gagtgaatcatcaacttcgtacttgaattttcacgggtcggccaaattcgtcc 37418808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 2e-38; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 42620887 - 42620775
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    |||| ||||||||||||| |||| ||||||||||||||| ||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||    
T  42620887 gagtcaaccatcaatttcatcccggaattttcaggggtcggccaaattcgtcccccaatttaaccaaatatcaaaatagtctctgaatttgtttgacgtc 42620788  T
Q  181 tatcaatttcatc 193  Q
     ||||||||||||    
T  42620787 catcaatttcatc 42620775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 38596867 - 38596973
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgt 179  Q
    ||||||||||||||| ||||||| |||||||| | ||||| ||||||||||||||  ||||   |||||||| ||  ||||| ||||||||||| |||||    
T  38596867 tgagtgaaccatcaaattcgtccttgaatttttatgggtcggccaaattcgtccctcaattatgcgaaatatcaacttagtccctgaatttgttagacgt 38596966  T
Q  180 ctatcaa 186  Q
    | |||||    
T  38596967 ccatcaa 38596973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 1344905 - 1344814
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    ||||||| |||||||||||||||||||||| || |  || | |||||| |||||| ||||| ||||||||| |||||||||  |||||||||    
T  1344905 gagtgaatcatcaatttcgtccctgaatttgcatgaatcggtcaaatttgtcccccaattttacgaaatatcaaaatagtccttgaatttgt 1344814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 40330608 - 40330553
Alignment:
Q  79 ttgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||| |||||| |||||||||||||||||| ||||| |||||| |||||||    
T  40330608 ttgagtgaatcatcaacttcgtccctgaattttcacgggtcggccaaaatcgtccc 40330553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 18728726 - 18728621
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    |||||||||||||| ||||||||||||||||||   ||| ||||| ||||||||  ||||   |||||||| ||  ||||| ||||||||||  ||||||    
T  18728726 gagtgaaccatcaaattcgtccctgaattttcacttgtcggccaacttcgtcccttaattatgcgaaatatcaacttagtccctgaatttgtcagacgtc 18728627  T
Q  181 tatcaa 186  Q
     |||||    
T  18728626 catcaa 18728621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 32087509 - 32087546
Alignment:
Q  76 gaattgagtgaaccatcaatttcgtccctgaattttca 113  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  32087509 gaattgagtgaaccatcaaattcgtccctgaattttca 32087546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 32090020 - 32089963
Alignment:
Q  77 aattgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||||| |||||| |||||||||||||||| | ||||| ||||| ||||||||    
T  32090020 aattgagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtccc 32089963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 32835876 - 32835929
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||| |||||| |||||||||||||||||| ||||| | ||||||||||||    
T  32835876 gagtgaatcatcaacttcgtccctgaattttcacgggtcggtcaaattcgtccc 32835929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 35291046 - 35291101
Alignment:
Q  79 ttgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||| ||||||| ||||||||||||||||| || || ||||||||| ||||    
T  35291046 ttgagtgaatcatcaatgtcgtccctgaattttcacggttcggccaaattcatccc 35291101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 35395333 - 35395438
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    |||||||||||||| ||| ||||||||||||||   ||| ||||| ||||||||  ||||   |||||||| ||  ||||  ||||||||||| ||||||    
T  35395333 gagtgaaccatcaaattcatccctgaattttcacacgtcggccaacttcgtccctcaattatgcgaaatatcaatttagttcctgaatttgttagacgtc 35395432  T
Q  181 tatcaa 186  Q
     |||||    
T  35395433 catcaa 35395438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 42619289 - 42619342
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||| |||||| |||||||||||||||||| ||||| | ||| ||||||||    
T  42619289 gagtgaatcatcaacttcgtccctgaattttcacgggtcggtcaatttcgtccc 42619342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 1343264 - 1343312
Alignment:
Q  124 aaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    |||||||||||  |||||||| |||||| |||||||||| |||||||||    
T  1343264 aaattcgtcccttaatttaacaaaatatcaaaatagtctttgaatttgt 1343312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 5783364 - 5783473
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| || || ||||||||||||||| ||||||||| ||||||||||||||||||    
T  5783364 gagtgaaccatcaatttcgtccctgaatttttaggggtcggccaaattcatctcccaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtc 5783463  T
Q  181 tatcaatttc 190  Q
     |||||||||    
T  5783464 catcaatttc 5783473  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 47269582 - 47269527
Alignment:
Q  79 ttgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||||||||||| |||||||||||||||||| | ||| |||||||| |||||    
T  47269582 ttgagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccc 47269527  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 11152544 - 11152598
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||| |||||| |||||||||||||||||| ||||| ||||| ||||||||    
T  11152544 tgagtgaatcatcaacttcgtccctgaattttcacgggtcggccaatttcgtccc 11152598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 31803792 - 31803739
Alignment:
Q  80 tgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtcc 133  Q
    |||||||| |||||| |||||||||||||||||| ||||| ||||| |||||||    
T  31803792 tgagtgaatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtcc 31803739  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 45379085 - 45379138
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||| |||||| |||||||||||||||||| ||||| ||||| ||||||||    
T  45379085 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtccc 45379138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 5784958 - 5784905
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||| |||||| |||||||||||||||||| ||||| | ||| ||||||||    
T  5784958 gagtgaatcatcaacttcgtccctgaattttcacgggtcggtcaacttcgtccc 5784905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 27940608 - 27940661
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||||||||||| |||||||||||||||  |||  | ||||||||||||    
T  27940608 gagtgaaccatcaatttagtccctgaattttcacaggttggtcaaattcgtccc 27940661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 33679259 - 33679312
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||| ||||||||| |||| |||||||| | ||||| ||||||||||||||    
T  33679259 gagtgaatcatcaattttgtccatgaatttttacgggtcagccaaattcgtccc 33679312  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 33685372 - 33685319
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||||||||| |||||||||||||||| | ||||| | ||||||| ||||    
T  33685372 gagtgaaccatcaaattcgtccctgaatttttacgggtcggtcaaattcatccc 33685319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 35478087 - 35478140
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||| |||||| ||| |||||||||||||| ||||| |||||||| |||||    
T  35478087 gagtgaatcatcaacttcatccctgaattttcacgggtcggccaaattagtccc 35478140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 35480099 - 35480046
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||||||||| ||||||| |||||||||| || || ||||||||| ||||    
T  35480099 gagtgaaccatcaacttcgtccttgaattttcacggatcagccaaattcatccc 35480046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 42134482 - 42134587
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    |||||||||||||| ||||||| |||||||| | ||||| |||||| || ||||  ||||   |||||||| ||  ||||| ||||||||||  ||||||    
T  42134482 gagtgaaccatcaaattcgtccttgaatttttacgggtcggccaaaatcatccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtc 42134581  T
Q  181 tatcaa 186  Q
     |||||    
T  42134582 catcaa 42134587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 46638935 - 46638878
Alignment:
Q  77 aattgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||||||||||||| ||||| |||||||||||| | ||| ||||| ||| ||||    
T  46638935 aattgagtgaaccatcaaattcgttcctgaattttcacgcgtcggccaacttcatccc 46638878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 6e-33; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 81 - 180
Target Start/End: Original strand, 41944576 - 41944675
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgacgtc 180  Q
    |||| ||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| ||||||||| |||||||| |||||||||    
T  41944576 gagtaaaccatcaatttcgtccctgaattttcagggatcggccaaattcgtcccccaatttaacgaaatatcaaaatagtccctgaatttttttgacgtc 41944675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 40963489 - 40963398
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    ||||||| |||||| ||||||||||||||| || |  || | ||||||||| ||| ||||||||||||||| ||||||||| ||||||||||    
T  40963489 gagtgaatcatcaacttcgtccctgaatttgcatgaatcggtcaaattcgttccccaatttaacgaaatatgaaaatagtccctgaatttgt 40963398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 23774149 - 23774257
Alignment:
Q  78 attgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtttgac 177  Q
    ||||||||||||||||| ||||||| |||||||||| | ||| ||||||||||||||  ||||   |||||||| ||  ||||| ||||||||||  |||    
T  23774149 attgagtgaaccatcaaattcgtccttgaattttcacgagtcggccaaattcgtccctcaattatgcgaaatatcaatttagtccctgaatttgtcagac 23774248  T
Q  178 gtctatcaa 186  Q
    ||| |||||    
T  23774249 gtccatcaa 23774257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 30501157 - 30501208
Alignment:
Q  121 gccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||||||||||    
T  30501157 gccaaattcgtcccccaatttaacgaaatatcaaaatagtttctgaatttgt 30501208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 40509037 - 40508982
Alignment:
Q  79 ttgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||||    
T  40509037 ttgagtgaaccatcaaattcgtccttgaattttcacgggtcggccaaattcgtccc 40508982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 48633868 - 48633982
Alignment:
Q  72 attggaattgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttg 171  Q
    |||| |||||||||||||||||| ||||||| |||||||||| ||||| | |||||||||||   ||||   |||||||| ||  ||||| |||||||||    
T  48633868 attgaaattgagtgaaccatcaaattcgtccttgaattttcacgggtcggtcaaattcgtccatcaattatgcgaaatatcaacttagtccctgaatttg 48633967  T
Q  172 tttgacgtctatcaa 186  Q
    |  |||||| |||||    
T  48633968 tcagacgtccatcaa 48633982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 40508493 - 40508546
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||| |||||| |||||||||||||||||| ||||| | ||||||||||||    
T  40508493 gagtgaatcatcaacttcgtccctgaattttcacgggtcggacaaattcgtccc 40508546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 41021127 - 41021074
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||||||||| |||||||||||||||||| | ||| |||||||| |||||    
T  41021127 gagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccc 41021074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 48635464 - 48635411
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||| ||||||||||||||||||||||||| || || | ||||||||||||    
T  48635464 gagtgaatcatcaatttcgtccctgaattttcacggatcggtcaaattcgtccc 48635411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 173
Target Start/End: Original strand, 33850982 - 33851074
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgtt 173  Q
    ||||||| |||||||||||| |||||||||||| ||||| | ||| ||||||||  ||||   |||||||| ||  || ||||||||||||||    
T  33850982 gagtgaatcatcaatttcgttcctgaattttcacgggtcggtcaacttcgtccctcaattatccgaaatatcaatttaatctctgaatttgtt 33851074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 26447723 - 26447814
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    ||||||| |||||| ||||||||| ||||| || |  || | ||||||||| ||  | ||||| ||||||| ||||||||||||||||||||    
T  26447723 gagtgaatcatcaacttcgtccctaaatttgcacgaatcggtcaaattcgttcctcattttaatgaaatatcaaaatagtctctgaatttgt 26447814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 45898475 - 45898440
Alignment:
Q  78 attgagtgaaccatcaatttcgtccctgaattttca 113  Q
    ||||||||||||||||| ||||||||||||||||||    
T  45898475 attgagtgaaccatcaaattcgtccctgaattttca 45898440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 51454374 - 51454283
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    |||||||||||||| ||||||| |||||||||| || || ||||||||| | ||  ||||   |||||||| ||| |||||| |||||||||    
T  51454374 gagtgaaccatcaaattcgtccttgaattttcacggatcggccaaattcattcctcaattatgcgaaatatcaaattagtctttgaatttgt 51454283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 18430395 - 18430342
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||||||||| ||||||| |||||||| | ||||| ||||||||| ||||    
T  18430395 gagtgaaccatcaaattcgtccttgaattttaacgggtcagccaaattcatccc 18430342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 23888896 - 23888843
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||||||||| ||||||||||||||||||   ||| ||||| ||||||||    
T  23888896 gagtgaaccatcaaattcgtccctgaattttcacacgtcggccaacttcgtccc 23888843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 41946192 - 41946099
Alignment:
Q  79 ttgagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccccaaatttaacgaaatattaaaatagtctctgaatttgt 172  Q
    |||||| || ||||||||| || ||||||||| ||  | || | |||||| |||||  ||||||||||||||| |||||||||  |||||||||    
T  41946192 ttgagtaaatcatcaatttggttcctgaatttgcactgatcggtcaaatttgtccctcaatttaacgaaatatcaaaatagtccatgaatttgt 41946099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 45257344 - 45257291
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    |||||||||||||| ||||| | |||||||||| ||||| ||||||||| ||||    
T  45257344 gagtgaaccatcaaattcgttcttgaattttcacgggtcggccaaattcatccc 45257291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 6758 - 6705
Alignment:
Q  81 gagtgaaccatcaatttcgtccctgaattttcaggggtctgccaaattcgtccc 134  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  6758 gagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgtccc 6705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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