View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7417_high_9 (Length: 372)
Name: NF7417_high_9
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7417_high_9 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] scaffold0356 (1 HSPs) |
| | |
|
| [»] scaffold0665 (1 HSPs) |
| | |
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| [»] scaffold1821 (1 HSPs) |
| | |
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| [»] scaffold0291 (1 HSPs) |
| | |
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| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 15558178 - 15558537
Alignment:
| Q |
13 |
aatatcacaaatgacgcagaggtaaatttatcgtttcaggtcccacccgtacatcaataagtacacaacagtaggaacatacaaaatagtcttgatttat |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| ||||| ||| ||| |||||||| |
|
|
| T |
15558178 |
aatatcacaaatgacgcataggtaaatttatcgtttcaggtcccacccatacatcaataagtacacagcagcaggaatatacataatggtcatgatttat |
15558277 |
T |
|
| Q |
113 |
gggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattgg |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15558278 |
gggccagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagtttttacaaagtcgcagaagcaaaatcttaaaaagcaagtcattgg |
15558377 |
T |
|
| Q |
213 |
caagccctatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgttatattggaatgtccgaagtattggtaatgtcgataccaaaa |
312 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15558378 |
caagccctatcaaacccatgcaaagggtggtcctcctccatcttccaaatgattctgttatattggaatgtccgaagtattggtaatgtcgataccaaaa |
15558477 |
T |
|
| Q |
313 |
ttgctttttcgtgaaggtaacagctgtgccgacaaaatggcgaatatgggtcatgagatt |
372 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| |
|
|
| T |
15558478 |
ttgctttttcgtgaaggtaacagctgtgcagtcaaattggcgaatatgggtcatgagatt |
15558537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 75 - 287
Target Start/End: Complemental strand, 23833232 - 23833017
Alignment:
| Q |
75 |
acacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttaca |
174 |
Q |
| |
|
||||| ||||| |||||||| ||| |||| ||||||||||| ||||| || || || ||||||||||||||||||||||||||||| ||||| || || |
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|
| T |
23833232 |
acacatcagtaaaaacatacagaatggtctggatttatgggccagaattcgcgaatacgaccaacgaatggctgatgaaggcttcacgcaagtcctctca |
23833133 |
T |
|
| Q |
175 |
aagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagcc---ctatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgtt |
271 |
Q |
| |
|
||||| | |||||| || |||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||| ||||||| |||| |
|
|
| T |
23833132 |
aagtcacaaaagcaagctcgtaaaaatcaagtcattggcaagccgcattatcatactcgtgcaaagggaggtcctcctccatcttcccaatgattatgtt |
23833033 |
T |
|
| Q |
272 |
atattggaatgtccga |
287 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
23833032 |
attttggaatgtccga |
23833017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 75 - 287
Target Start/End: Original strand, 22955160 - 22955375
Alignment:
| Q |
75 |
acacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttaca |
174 |
Q |
| |
|
||||| ||||| |||||||| ||| |||| ||||||||||| ||||| || || || |||||||||||||||||||||||||||| ||||| || || |
|
|
| T |
22955160 |
acacatcagtaaaaacatacagaatggtctggatttatgggccagaattcgcgaatacgaccaacgaatggctgatgaaggcttcatgcaagtcctctca |
22955259 |
T |
|
| Q |
175 |
aagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagcc---ctatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgtt |
271 |
Q |
| |
|
||||| | |||||| || |||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||| ||||||| |||| |
|
|
| T |
22955260 |
aagtcacaaaagcaagctcgtaaaaatcaagtcattggcaagccgtattatcatactcgtgcaaagggaggtcctcctccatcttcccaatgattatgtt |
22955359 |
T |
|
| Q |
272 |
atattggaatgtccga |
287 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
22955360 |
attttggaatgtccga |
22955375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 30491956 - 30491990
Alignment:
| Q |
106 |
gatttatgggctagaatccgtgagtatgaccaacg |
140 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30491956 |
gatttatgggctagaattcgtgagtatgaccaacg |
30491990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 45 - 286
Target Start/End: Complemental strand, 8447323 - 8447085
Alignment:
| Q |
45 |
gtttcaggtcccacccgtacatcaataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatg |
144 |
Q |
| |
|
||||||||||||||||||||| ||| | || |||| ||| ||||||||||| ||| |||||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
8447323 |
gtttcaggtcccacccgtacagcaacatgttcacagcagcaggaacatacagaatggtcttgatttatgggccagaatccgtgaatatgatcaacgaatg |
8447224 |
T |
|
| Q |
145 |
gctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagccctatcaaactcgtgcaaagggtggtc |
244 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || |||||||||||| ||||| |||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
8447223 |
gctgacgaaggcttcactcaagttcttacaaaggcgcagaagcaaaatcgtaaaatgcaagtcattggcaagacctatcaaacccgtgcaaagggtggtc |
8447124 |
T |
|
| Q |
245 |
ctcctccatcatccaaatgattctgttatattggaatgtccg |
286 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
8447123 |
---ctccatcttccaaataattctgttatattggaatgtccg |
8447085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 71 - 319
Target Start/End: Original strand, 24026975 - 24027224
Alignment:
| Q |
71 |
aagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttct |
170 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||| || || | || |||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
24026975 |
aagtacacaacatcaggaacatacaaaatgatcttgatttatgggccagtatacacgaatatgaccaactaatggctgatgaaggcttcactcaagtgct |
24027074 |
T |
|
| Q |
171 |
tacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggc-aagccctatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattctg |
269 |
Q |
| |
|
| |||||||| |||| |||| ||||||||| |||||||||||| ||||| ||| |||| |||| |||||||||| ||||||||| ||| ||||||| || |
|
|
| T |
24027075 |
ttcaaagtcgcagaaccaaagtcttaaaaatcaagtcattggcaaagccttattaaacccgtgtgaagggtggtcatcctccatcttcccaatgattatg |
24027174 |
T |
|
| Q |
270 |
ttatattggaatgtccgaagtattggtaatgtcgataccaaaattgcttt |
319 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
24027175 |
ttatattgaaatgtccgaggtattggcaatgtcgataccaaaattgcttt |
24027224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0356 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 69 - 319
Target Start/End: Original strand, 9235 - 9485
Alignment:
| Q |
69 |
ataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagtt |
168 |
Q |
| |
|
||||||||||| ||| || ||| |||| ||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9235 |
ataagtacacagcagcagaaacgtacagaatgatcttgatttatgggccagaatacgtgaatatgaccaacgaatggctgatgaaggcttcactcaagtc |
9334 |
T |
|
| Q |
169 |
cttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagccctatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattct |
268 |
Q |
| |
|
||| |||| ||| |||| || ||||||||||||||||| || ||||||| ||||| || || |||||||| ||| ||| ||||| ||| ||||||| | |
|
|
| T |
9335 |
ctttcaaaatcgcagaaacataatcttaaaaagcaagttgttagcaagccttatcagacccgagcaaagggcggtaatccaccatcttcccaatgattat |
9434 |
T |
|
| Q |
269 |
gttatattggaatgtccgaagtattggtaatgtcgataccaaaattgcttt |
319 |
Q |
| |
|
|| ||||||| ||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
9435 |
tttgtattggactgtccgaggtattgacaatgtcgataccaaaattgcttt |
9485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0665 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0665
Description:
Target: scaffold0665; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 69 - 319
Target Start/End: Original strand, 6614 - 6865
Alignment:
| Q |
69 |
ataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagtt |
168 |
Q |
| |
|
||||||||||| ||| || ||| |||| ||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6614 |
ataagtacacagcagcagaaacgtacagaatgatcttgatttatgggccagaatacgtgaatatgaccaacgaatggctgatgaaggcttcactcaagtc |
6713 |
T |
|
| Q |
169 |
cttacaaagtcgtagaagcaaaatctt-aaaaagcaagtcattggcaagccctatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattc |
267 |
Q |
| |
|
||| |||| ||| |||| || |||||| ||||||||||| || ||||||| ||||| || || |||||||| ||| ||| ||||| ||| ||||||| |
|
|
| T |
6714 |
ctttcaaaatcgcagaaacataatcttaaaaaagcaagttgttagcaagccttatcagacccgagcaaagggcggtaatccaccatcttcccaatgatta |
6813 |
T |
|
| Q |
268 |
tgttatattggaatgtccgaagtattggtaatgtcgataccaaaattgcttt |
319 |
Q |
| |
|
| || ||||||| ||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
6814 |
ttttgtattggactgtccgaggtattgacaatgtcgataccaaaattgcttt |
6865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 27187318 - 27187585
Alignment:
| Q |
23 |
atgacgcagaggtaaatttatcgtttcaggtcccacccgtacatcaataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaat |
122 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| | || || | ||| ||||| ||||| |||||||| ||| |||| ||||||||||| ||||| |
|
|
| T |
27187318 |
atgacgcagaggtaaatatatcgtctcaggtcccatctgttcagcctgaagcacacatcagtaaaaacatacagaatggtctggatttatgggccagaat |
27187417 |
T |
|
| Q |
123 |
ccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagcc---c |
219 |
Q |
| |
|
|| || || ||||||||||||||||||||||||||||| ||||| || ||||||| | |||||| || |||||| ||||||||||||||||| |
|
|
| T |
27187418 |
tcgcgaatacgaccaacgaatggctgatgaaggcttcacgcaagtcctctcaaagtcacaaaagcaagctcgtaaaaatcaagtcattggcaagccgcat |
27187517 |
T |
|
| Q |
220 |
tatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgttatattggaatgtccga |
287 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||| ||||||| |||||| ||||||||||||| |
|
|
| T |
27187518 |
tatcagactcgtgcaaagggaggtcctcctccatcttcccaatgattatgttattttggaatgtccga |
27187585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 26 - 287
Target Start/End: Original strand, 27176954 - 27177218
Alignment:
| Q |
26 |
acgcagaggtaaatttatcgtttcaggtcccacccgtacatcaataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccg |
125 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| || || | ||| ||||| ||||| |||||||| ||| |||| ||||||||||| ||||| || |
|
|
| T |
27176954 |
acgcagaggtaaatatatcgtctcaggtcccatatgttcagcctgaagcacacatcagtaaaaacatacataatggtctggatttatgggccagaattcg |
27177053 |
T |
|
| Q |
126 |
tgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagcc---ctat |
222 |
Q |
| |
|
|| || |||||||||||||||||||||||||||| ||||| || ||||||| | |||||| || |||||| ||||||||||||||||| ||| |
|
|
| T |
27177054 |
cgaatacgaccaacgaatggctgatgaaggcttcatgcaagtcctctcaaagtcacaaaagcaagctcgtaaaaatcaagtcattggcaagccgtattat |
27177153 |
T |
|
| Q |
223 |
caaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgttatattggaatgtccga |
287 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| ||| ||||||| |||||| ||||||||||||| |
|
|
| T |
27177154 |
cagactcgtgcaaagggaggtcctcctccatcttcccaatgattatgttattttggaatgtccga |
27177218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 8681684 - 8681627
Alignment:
| Q |
224 |
aaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgttatattggaat |
281 |
Q |
| |
|
|||| |||||||||||||||| ||||||| | || ||||| |||||||||||||||| |
|
|
| T |
8681684 |
aaacccgtgcaaagggtggtcatcctccaactgcccaatgaatctgttatattggaat |
8681627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 16914288 - 16914024
Alignment:
| Q |
23 |
atgacgcagaggtaaatttatcgtttcaggtcccacccgtacatcaataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaat |
122 |
Q |
| |
|
|||||| |||||||||| || ||| |||||||||| | || |||| ||| ||||| ||||| |||||||| ||| ||| ||||||| | ||||| |
|
|
| T |
16914288 |
atgacgtagaggtaaatataccgtctcaggtcccatctgttcatcctgaagcacacatcagtaaaaacatacagaatgctctggatttattttccagaat |
16914189 |
T |
|
| Q |
123 |
ccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagcc---c |
219 |
Q |
| |
|
|| || || ||||||||||||| ||||||||||||||| |||||||| |||||||| |||||||| || |||||| ||||||||||||||||| |
|
|
| T |
16914188 |
tcgcgaatacgaccaacgaatggttgatgaaggcttcacgcaagttctctcaaagtcgcagaagcaatctcgtaaaaatcaagtcattggcaagccgcat |
16914089 |
T |
|
| Q |
220 |
tatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgttatattggaatgtc |
284 |
Q |
| |
|
||||| || |||||||| || |||||||||||||| ||| ||||||| |||||| |||||||||| |
|
|
| T |
16914088 |
tatcagacccgtgcaaacggaggtcctcctccatcttcccaatgattatgttattttggaatgtc |
16914024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 75 - 266
Target Start/End: Complemental strand, 25248370 - 25248176
Alignment:
| Q |
75 |
acacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttaca |
174 |
Q |
| |
|
||||| ||||| |||||||| || |||| ||||||||||||||||| | || || ||||||||||||||||| ||||||||||| ||||| || | |
|
|
| T |
25248370 |
acacatcagtaaaaacatacaggatggtctagatttatgggctagaatttgcgaatacgaccaacgaatggctgacgaaggcttcacgcaagtcctctta |
25248271 |
T |
|
| Q |
175 |
aagtcgtagaagcaaaatcttaaaaagcaagtcattggcaa---gccctatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgatt |
266 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||||| || |||||||| |||| |||||||||| |||||||||| ||| ||||||| |
|
|
| T |
25248270 |
aagtcacagaagcaagctcgtaaaaagcaagtcattggcaaattgcattatcaaacccgtgaaaagggtggtactcctccatcttcccaatgatt |
25248176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 75 - 266
Target Start/End: Complemental strand, 25312154 - 25311960
Alignment:
| Q |
75 |
acacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttaca |
174 |
Q |
| |
|
||||| ||||| |||||||| || |||| ||||||||||||||||| | || || ||||||||||||||||| ||||||||||| ||||| || | |
|
|
| T |
25312154 |
acacatcagtaaaaacatacaggatggtctagatttatgggctagaatttgcgaatacgaccaacgaatggctgacgaaggcttcacgcaagtcctctta |
25312055 |
T |
|
| Q |
175 |
aagtcgtagaagcaaaatcttaaaaagcaagtcattggcaa---gccctatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgatt |
266 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||||| || |||||||| |||| |||||||||| |||||||||| ||| ||||||| |
|
|
| T |
25312054 |
aagtcacagaagcaagctcgtaaaaagcaagtcattggcaaattgcattatcaaacccgtgaaaagggtggtactcctccatcttcccaatgatt |
25311960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 243
Target Start/End: Original strand, 24056783 - 24056922
Alignment:
| Q |
104 |
ttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagca |
203 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| ||||| ||| ||||| | ||||||||| || | || ||| || |||| || ||||||||||| |
|
|
| T |
24056783 |
ttgacttatgggccagaatccgtgaatatgaccagaaaatggatgaggaaggttacactcaagtcctatccaaatcgcagcagcagaagcttaaaaagca |
24056882 |
T |
|
| Q |
204 |
agtcattggcaagccctatcaaactcgtgcaaagggtggt |
243 |
Q |
| |
|
||| ||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
24056883 |
agttattggcaagccttatcagacccgtgcaaagggtggt |
24056922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 24058942 - 24059010
Alignment:
| Q |
248 |
ctccatcatccaaatgattctgttatattggaatgtccgaagtattggtaatgtcgataccaaaattgc |
316 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||||| ||| ||||||| |||||||||||||||||||| |
|
|
| T |
24058942 |
ctccatcttcccaatgattcttttatattggaatgttcgaggtattggcaatgtcgataccaaaattgc |
24059010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1821 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1821
Description:
Target: scaffold1821; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 509 - 645
Alignment:
| Q |
154 |
ggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagccc---tatcaaactcgtgcaaagggtggtcctcctc |
250 |
Q |
| |
|
|||||||| ||||| || ||||||| | |||||| || |||||| ||||||||||||||||| ||||| ||||||||| || | |||||||||| |
|
|
| T |
509 |
ggcttcacgcaagtcctctcaaagtcacaaaagcaagctcgtaaaaatcaagtcattggcaagccgcattatcagactcgtgcacagagaggtcctcctc |
608 |
T |
|
| Q |
251 |
catcatccaaatgattctgttatattggaatgtccga |
287 |
Q |
| |
|
|||| ||| ||||||| |||||| ||||||||||||| |
|
|
| T |
609 |
catcttcccaatgattatgttattttggaatgtccga |
645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 16013 - 15948
Alignment:
| Q |
106 |
gatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttctt |
171 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||| | || || ||||| ||||||||||||||| |
|
|
| T |
16013 |
gatttatgggctagaattcgtgaatatgacaaacggaccgcggaggaaggattcactcaagttctt |
15948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 99237 - 99302
Alignment:
| Q |
106 |
gatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttctt |
171 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||| | || || ||||| ||||||||||||||| |
|
|
| T |
99237 |
gatttatgggctagaattcgtgaatatgacaaacggaccgcggaggaaggattcactcaagttctt |
99302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 17150909 - 17150945
Alignment:
| Q |
106 |
gatttatgggctagaatccgtgagtatgaccaacgaa |
142 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
17150909 |
gatttatgggctagaattcgtgagtatgacaaacgaa |
17150945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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