View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7417_low_11 (Length: 370)
Name: NF7417_low_11
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7417_low_11 |
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| [»] scaffold0458 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 44489516 - 44489170
Alignment:
| Q |
8 |
tgaaaagaagaacaagacattatggaattctaccgggttgcatcctcgtttcaaaaacggtagattgcctatgaagatgtcaaatcgaaccagtgtcatt |
107 |
Q |
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| T |
44489516 |
tgaaaaaaagaacaagacattatggaattctaccgggttgcatcctcgtttcaaaaacggtagattgcctatgaagatgtcaaatcgaaccagagtcatt |
44489417 |
T |
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| Q |
108 |
taccattcttcaagaggcggaggagaaacccatgatgatgatgatcaaagtggtgttttggttacggacattgttgttgttagtcaagatgggagtggaa |
207 |
Q |
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| T |
44489416 |
taccattcttcaagaggcggaggagaaacccatgatgatgatgatcaaagtggtgttttggttagggacattgttgttgttagtcaagatgggagtggaa |
44489317 |
T |
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| Q |
208 |
actttacaactatcaatgatgctgttgctgctgctccaaataacactatcaatgcaacaaatggatatttcatgatatttatcaaagagggcgtttatga |
307 |
Q |
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| T |
44489316 |
actttacaactatcaatgatgctgttgctgctgctccaaataacactatcaatgcaacaaatggatatttcatgatatttatcaaagagggcgtttatga |
44489217 |
T |
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| Q |
308 |
agaatatgtctctatccctcaaaacaaggcgtatctgatgatgatcg |
354 |
Q |
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| T |
44489216 |
agaatatgtctctatccctcaaaacaaggcgtatctgatgatgatcg |
44489170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 44464956 - 44464892
Alignment:
| Q |
186 |
gttagtcaagatgggagtggaaactttacaactatcaatgatgctgttgctgctgctccaaataa |
250 |
Q |
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| T |
44464956 |
gttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataa |
44464892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 24061920 - 24061844
Alignment:
| Q |
177 |
attgttgttgttagtcaagatgggagtggaaactttacaactatcaatgatgctgttgctgctgctccaaataacac |
253 |
Q |
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| T |
24061920 |
attgttgttgttagtcaagatggaagtggaaacttcaccactatcaatgatgcaatagctgctgcaccaaataacac |
24061844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 39450346 - 39450421
Alignment:
| Q |
178 |
ttgttgttgttagtcaagatgggagtggaaactttacaactatcaatgatgctgttgctgctgctccaaataacac |
253 |
Q |
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| T |
39450346 |
ttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacgccgtagctgctgcaccaaataacac |
39450421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 39471218 - 39471293
Alignment:
| Q |
178 |
ttgttgttgttagtcaagatgggagtggaaactttacaactatcaatgatgctgttgctgctgctccaaataacac |
253 |
Q |
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| T |
39471218 |
ttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacgccgtagctgctgcaccaaataacac |
39471293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 3275 - 3200
Alignment:
| Q |
178 |
ttgttgttgttagtcaagatgggagtggaaactttacaactatcaatgatgctgttgctgctgctccaaataacac |
253 |
Q |
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| T |
3275 |
ttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacgccgtagctgctgcaccaaataacac |
3200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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