View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7417_low_13 (Length: 352)

Name: NF7417_low_13
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7417_low_13
NF7417_low_13
[»] chr2 (2 HSPs)
chr2 (19-337)||(33652643-33652961)
chr2 (38-205)||(30922482-30922649)
[»] chr6 (4 HSPs)
chr6 (37-337)||(22977129-22977429)
chr6 (38-337)||(2626227-2626526)
chr6 (37-337)||(23810973-23811273)
chr6 (56-310)||(34325111-34325365)
[»] chr1 (1 HSPs)
chr1 (32-328)||(47388569-47388865)
[»] chr7 (1 HSPs)
chr7 (38-328)||(42921890-42922180)
[»] chr8 (4 HSPs)
chr8 (38-328)||(45287813-45288103)
chr8 (38-328)||(19251835-19252112)
chr8 (38-328)||(19325019-19325296)
chr8 (81-328)||(3753107-3753354)
[»] scaffold0103 (1 HSPs)
scaffold0103 (38-149)||(11444-11555)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 33652643 - 33652961
Alignment:
19 agagaactcataacttccatgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaagataagtttacggaatcctttcgccacttttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33652643 agagaactcataacttccatgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaagataagtttacggaatcctttcgccacttttg 33652742  T
119 aagagtccgcctcatcatttatccatttcttcctgttgtggattgattcttgcattgcttggttactcggcggaggagtagagatttgaatctctgagac 218  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33652743 aagagtccacctcatcatttatccatttcttcctgttgtggattgattcttgcattgcttggttactcggcggaggagtagagatttgaatctctgagac 33652842  T
219 tttcggtgaggtagcattgctttcttctatttcctgattcacctttgaattcacagcagtatatattaatggtttgttaggtattgcagctgtagaattt 318  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33652843 tttaggtgaggtagcattgctttcttctatttcctgattcacctttgaattcacagcagtatatattaatggtttgttaggtattgcagctgtagaattt 33652942  T
319 gtgatcatgtcagtattat 337  Q
    |||||||||||||||||||    
33652943 gtgatcatgtcagtattat 33652961  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 38 - 205
Target Start/End: Original strand, 30922482 - 30922649
Alignment:
38 tgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaagataagtttacggaatcctttcgccacttttgaagagtccgcctcatcatt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||  ||||  |||||||||||||| | ||||||||||    
30922482 tgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaaaataagcttacgaaattttttcatcacttttgaagagttctcctcatcatt 30922581  T
138 tatccatttcttcctgttgtggattgattcttgcattgcttggttactcggcggaggagtagagattt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
30922582 tatccatttcttcctgttgtggattgattcttgcattgcttggttacttggcggaggagtatagattt 30922649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 37 - 337
Target Start/End: Original strand, 22977129 - 22977429
Alignment:
37 atgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaagataagtttacggaatcctttcgccacttttgaagagtccgcctcatcat 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||| | |||||||||    
22977129 atgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaaaataagcttacgaaatcctttcaccacttttgaagagttctcctcatcat 22977228  T
137 ttatccatttcttcctgttgtggattgattcttgcattgcttggttactcggcggaggagtagagatttgaatctctgagactttcggtgaggtagcatt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| ||||    
22977229 ttatccatttcttcctgttgtggattgattcttgcattgcttggttactcggctgaggagtagagatttgaatctatgagactttaggtgaggtaacatt 22977328  T
237 gctttcttctatttcctgattcacctttgaattcacagcagtatatattaatggtttgttaggtattgcagctgtagaatttgtgatcatgtcagtatta 336  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||| |||||||    
22977329 actttcttctatttcctgattcaccttagaattcacagcagtatatattaatggtttgttaggtaatgcatctgtagaagttgtgatcatgttagtatta 22977428  T
337 t 337  Q
    |    
22977429 t 22977429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 38 - 337
Target Start/End: Original strand, 2626227 - 2626526
Alignment:
38 tgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaagataagtttacggaatcctttcgccacttttgaagagtccgcctcatcatt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||  ||||||||||||||| | ||||||||||    
2626227 tgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaaaataagcttacgaaatcctttaaccacttttgaagagttctcctcatcatt 2626326  T
138 tatccatttcttcctgttgtggattgattcttgcattgcttggttactcggcggaggagtagagatttgaatctctgagactttcggtgaggtagcattg 237  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||     
2626327 tatccatttctttctgttgtggattgattcttgcattgcttggttactcggcggaggagtagagatttgaatctatgagactttaggtgaggtaacatta 2626426  T
238 ctttcttctatttcctgattcacctttgaattcacagcagtatatattaatggtttgttaggtattgcagctgtagaatttgtgatcatgtcagtattat 337  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||    
2626427 ctttcttctatttcctgattcaccttagaattcacagcagtatatattaatggtttgttaggtaatgcagctgtagaagttgtgatcatgttagtattat 2626526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 37 - 337
Target Start/End: Complemental strand, 23811273 - 23810973
Alignment:
37 atgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaagataagtttacggaatcctttcgccacttttgaagagtccgcctcatcat 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||| | |||||||||    
23811273 atgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaaaataagcttacgaaatcctttcaccacttttgaagagttctcctcatcat 23811174  T
137 ttatccatttcttcctgttgtggattgattcttgcattgcttggttactcggcggaggagtagagatttgaatctctgagactttcggtgaggtagcatt 236  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| ||||    
23811173 ttatccatttcttcctgttgtggattgattcttgcattgcatggttactcggcagaggagtagagatttgaatctatgagactttaggtgaggtaacatt 23811074  T
237 gctttcttctatttcctgattcacctttgaattcacagcagtatatattaatggtttgttaggtattgcagctgtagaatttgtgatcatgtcagtatta 336  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||| |||||||    
23811073 actttcttctatttcctgattcaccttagaattcacagcagtatatattaatggtttgttaggtaatgcaactgtagaagttgtgatcatgttagtatta 23810974  T
337 t 337  Q
    |    
23810973 t 23810973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 56 - 310
Target Start/End: Complemental strand, 34325365 - 34325111
Alignment:
56 caaaggttcttcaactccttcttccaaagaagataagtttacggaatcctttcgccacttttgaagagtccgcctcatcatttatccatttcttcctgtt 155  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||| ||||||||||||||| | ||||||||||||||||||||||||||||    
34325365 caaaggttcttcaactccttcttccaaagaaaataagcttacgaaattctttcaccacttttgaagagttctcctcatcatttatccatttcttcctgtt 34325266  T
156 gtggattgattcttgcattgcttggttactcggcggaggagtagagatttgaatctctgagactttcggtgaggtagcattgctttcttctatttcctga 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||||||||||| ||||    
34325265 gtggattgattcttgcattgcttggttactcggcggaggagtagagatttgaatctctcagactttaggtgaggtaacattactttcttctattttctga 34325166  T
256 ttcacctttgaattcacagcagtatatattaatggtttgttaggtattgcagctg 310  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||    
34325165 ttcaccttagaattcacaacagtatatattaatggtttgttaggtaatgcagctg 34325111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 32 - 328
Target Start/End: Original strand, 47388569 - 47388865
Alignment:
32 cttccatgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaagataagtttacggaatcctttcgccacttttgaagagtccgcctc 131  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||| ||||||||||||||| | ||||    
47388569 cttctatgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaaaataagcttacgaaattctttcaccacttttgaagagttctcctc 47388668  T
132 atcatttatccatttcttcctgttgtggattgattcttgcattgcttggttactcggcggaggagtagagatttgaatctctgagactttcggtgaggta 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
47388669 atcatttatccatttcttcctgttgtggattgattcttgcattgcttggttactcggcggaggagtagagatttgaatctctgagactttaggtgaggta 47388768  T
232 gcattgctttcttctatttcctgattcacctttgaattcacagcagtatatattaatggtttgttaggtattgcagctgtagaatttgtgatcatgt 328  Q
     |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
47388769 acatttctttcttctatttcctgattcaccttagaattcacagcagtatatattaatggtttgttaggtaatgcagctgttgaagttgtgatcatgt 47388865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 38 - 328
Target Start/End: Complemental strand, 42922180 - 42921890
Alignment:
38 tgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaagataagtttacggaatcctttcgccacttttgaagagtccgcctcatcatt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||| ||||||||||||||| | ||||||||||    
42922180 tgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaaaataagcttacgaaattctttcaccacttttgaagagttctcctcatcatt 42922081  T
138 tatccatttcttcctgttgtggattgattcttgcattgcttggttactcggcggaggagtagagatttgaatctctgagactttcggtgaggtagcattg 237  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
42922080 tatccatttcttcctgttgtggattgatacttgcattgcttggttactcggcggaggagtagagatttgaatctctgagactttaggtgaggtaacatta 42921981  T
238 ctttcttctatttcctgattcacctttgaattcacagcagtatatattaatggtttgttaggtattgcagctgtagaatttgtgatcatgt 328  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
42921980 ctttcttctatttcctgattcaccttagaattcacagcagtatatattaatggtttgttaggtaatgcagctgtagaagttgtgatcatgt 42921890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 38 - 328
Target Start/End: Original strand, 45287813 - 45288103
Alignment:
38 tgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaagataagtttacggaatcctttcgccacttttgaagagtccgcctcatcatt 137  Q
    |||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||| ||||| ||| ||||| ||||||||||||||| | ||| ||||||    
45287813 tgaaaaagtatcaacccacaaaggtttttcaacttcttcttccaaagaaaataagcttacgaaattctttcaccacttttgaagagttctcctaatcatt 45287912  T
138 tatccatttcttcctgttgtggattgattcttgcattgcttggttactcggcggaggagtagagatttgaatctctgagactttcggtgaggtagcattg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
45287913 tatccatttcttcctgttgtggattgattcttgcattgcttggttactcggcggaggagtagagatttgaatctctgagactttaggtgaggtaacatta 45288012  T
238 ctttcttctatttcctgattcacctttgaattcacagcagtatatattaatggtttgttaggtattgcagctgtagaatttgtgatcatgt 328  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||    
45288013 ctttcttctatttcctgattcaccttagaattcacagcagtatatattgatggtttgttaggtaatgcagctgtagaagttgtgatcatgt 45288103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 38 - 328
Target Start/End: Complemental strand, 19252112 - 19251835
Alignment:
38 tgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaagataagtttacggaatcctttcgccacttttgaagagtccgcctcatcatt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||| ||||||||||||||| | |||||| |||    
19252112 tgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaaaataagcttacgaaattctttcaccacttttgaagagttctcctcattatt 19252013  T
138 tatccatttcttcctgttgtggattgattcttgcattgcttggttactcggcggaggagtagagatttgaatctctgagactttcggtgaggtagcattg 237  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||             |||||||| ||||||||| ||||     
19252012 tatccatttcttcctgttgtggattgattcttgtattgcttggttactcggcggaggagtaga-------------gagactttaggtgaggtaacatta 19251926  T
238 ctttcttctatttcctgattcacctttgaattcacagcagtatatattaatggtttgttaggtattgcagctgtagaatttgtgatcatgt 328  Q
    |||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |||| |||||||| ||||||||||||    
19251925 ctttcttctatttcctgattcaccttagaattcacaacggtatatattaatggtttgttaggtaatgcaactgtagaagttgtgatcatgt 19251835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 38 - 328
Target Start/End: Complemental strand, 19325296 - 19325019
Alignment:
38 tgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaagataagtttacggaatcctttcgccacttttgaagagtccgcctcatcatt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||| ||||||||||||||| | |||||| |||    
19325296 tgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaaaataagcttacgaaattctttcaccacttttgaagagttctcctcattatt 19325197  T
138 tatccatttcttcctgttgtggattgattcttgcattgcttggttactcggcggaggagtagagatttgaatctctgagactttcggtgaggtagcattg 237  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||             |||||||| ||||||||| ||||     
19325196 tatccatttcttcctgttgtggattgattcttgtattgcttggttactcggcggaggagtaga-------------gagactttaggtgaggtaacatta 19325110  T
238 ctttcttctatttcctgattcacctttgaattcacagcagtatatattaatggtttgttaggtattgcagctgtagaatttgtgatcatgt 328  Q
    |||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |||| |||||||| ||||||||||||    
19325109 ctttcttctatttcctgattcaccttagaattcacaacggtatatattaatggtttgttaggtaatgcaactgtagaagttgtgatcatgt 19325019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 81 - 328
Target Start/End: Complemental strand, 3753354 - 3753107
Alignment:
81 aaagaagataagtttacggaatcctttcgccacttttgaagagtccgcctcatcatttatccatttcttcctgttgtggattgattcttgcattgcttgg 180  Q
    |||||| ||||| ||||  ||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
3753354 aaagaaaataagcttacaaaattctttcaccacttttgaagagttctcctcatcatttatccatttcttcctgttgtggattgattcttgcattgcttgg 3753255  T
181 ttactcggcggaggagtagagatttgaatctctgagactttcggtgaggtagcattgctttcttctatttcctgattcacctttgaattcacagcagtat 280  Q
    ||||||| |||||||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||| ||||||||||||||||    
3753254 ttactcgacggaggagtagatatttgaatctctgagactttaggtgaggtaacattactttcttctattttctgattcaccttagaattcacagcagtat 3753155  T
281 atattaatggtttgttaggtattgcagctgtagaatttgtgatcatgt 328  Q
    ||||||||||||||||||||| | |||| |||||| ||||||||||||    
3753154 atattaatggtttgttaggtaatacagcagtagaagttgtgatcatgt 3753107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 38 - 149
Target Start/End: Complemental strand, 11555 - 11444
Alignment:
38 tgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaagataagtttacggaatcctttcgccacttttgaagagtccgcctcatcatt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||| | ||||||||||    
11555 tgaaaaagtatcaatccacaaaggttcttcaactccttcttccaaagaaaataagcttacgaaatcctttcaccacttttgaagagttctcctcatcatt 11456  T
138 tatccatttctt 149  Q
    ||||||||||||    
11455 tatccatttctt 11444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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