View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7417_low_14 (Length: 335)
Name: NF7417_low_14
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7417_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 318
Target Start/End: Complemental strand, 47993956 - 47993651
Alignment:
| Q |
11 |
catagagtaaaatgcatatcccaatcataatgcatagagagataacccaatcttaacaataaaaaatgaaataagtggatgagattaaaacatcttacct |
110 |
Q |
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| T |
47993956 |
catagagtaaaatgcatatcccaatcataatgcatagagagataacccaatctta-caataaaaaatgaaataagtggatgagattaaaacatcttacgt |
47993858 |
T |
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| Q |
111 |
tcacttgtttctttccataaacaatctcaaattttaattaaggattatgaattcatattacacagtttgagacgatgaatcaattttgacggttgatcca |
210 |
Q |
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|||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |||||||||| ||||||||| |
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| T |
47993857 |
tcacctttttcttaccataaacaatctcaaattttaattaaggattatga-ttcatattacacagtttcagacaatgaaccaattttgactgttgatcca |
47993759 |
T |
|
| Q |
211 |
gatccgacgaccaagtcgaatcactatgtgacattgttagtgtgtctaatccaaatctttacaattactttggatgtttttagagagaagctaaatcccc |
310 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47993758 |
gatccgacgaccaagtcgaatcactacgtgacattgttagcgtgtctaatccaaatctttacaattactttggatgtttttagagagaagctagatcccc |
47993659 |
T |
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| Q |
311 |
tacttttt |
318 |
Q |
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|||||||| |
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| T |
47993658 |
tacttttt |
47993651 |
T |
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