View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7417_low_15 (Length: 334)
Name: NF7417_low_15
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7417_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 48235720 - 48235395
Alignment:
| Q |
1 |
acaaacaggaatgttaacaccaaaatcagatatatattcattagggataatgctactgcagataatcacagccaggcctcctatgggactttctcatcat |
100 |
Q |
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| T |
48235720 |
acaaacaggaatgttaacaccaaaatcagatatatattcattagggataatgctactgcagataatcacagccaggcctcctatgggactttctcatcat |
48235621 |
T |
|
| Q |
101 |
gttaaaagggcaattgaaaaggagcagttttcggagattcttgattctgcggtgactgattggccagttgaagaggctctatcatttgcaaaattagcat |
200 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48235620 |
gttaaaagggcaattgaaaaggaccagttttcagagattcttgattctgcggtgactgattggccagttgaagaggctctatcatttgcaaaattagcat |
48235521 |
T |
|
| Q |
201 |
tgaattgtgcagaactctgcaagaaagataggccaaatcttgcatcagttgtgcttccagagcttaatagattaagaggccttggatgtaatgataatca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48235520 |
tgaattgtgcagaactctgcaagaaagataggccaaatcttgcatcagttgtgcttccagagcttaatagattaagaggccttggatttaatgataatca |
48235421 |
T |
|
| Q |
301 |
agtttttactgatactaagaataata |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
48235420 |
agtttttactgatactaagaataata |
48235395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 3686784 - 3686899
Alignment:
| Q |
5 |
acaggaatgttaacaccaaaatcagatatatattcattagggataatgctactgcagataatcacagccaggcctcctatgggactttctcatcatgtta |
104 |
Q |
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||||||| |||||| ||||||||||||| ||||| |||||||||||| | || || || |||||||| | |||||| |||||||||||||||||||||| |
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| T |
3686784 |
acaggaaaattaacaacaaaatcagatatttattctttagggataatgtttcttcaaattatcacagctaagcctccaatgggactttctcatcatgtta |
3686883 |
T |
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| Q |
105 |
aaagggcaattgaaaa |
120 |
Q |
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| T |
3686884 |
aaagggcaattgaaaa |
3686899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 42674255 - 42674307
Alignment:
| Q |
152 |
gtgactgattggccagttgaagaggctctatcatttgcaaaattagcattgaa |
204 |
Q |
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|||||||||||||| || ||||||||| ||||| |||| |||||||| ||||| |
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| T |
42674255 |
gtgactgattggccggtcgaagaggctttatcacttgctaaattagctttgaa |
42674307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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