View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7417_low_16 (Length: 312)
Name: NF7417_low_16
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7417_low_16 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 2835439 - 2835730
Alignment:
| Q |
18 |
catgaaaagtatcttcagttatttcacaagatatttgtgaaataacttatcaggttcccttttgcaaccagttttaccacctgatgagtctactcagtgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2835439 |
catgaaaagtatcttcagttatttcacaagatatttgtgaaataactcatcaggttcccttttgcaaccagttttaccacctgatgagcctactcagtgt |
2835538 |
T |
|
| Q |
118 |
tataatgcattcacactcaggccagaaaatggtgtttttgaataatgaatttggtgtttcatttatgtccatttactctcctattaaattatatatatat |
217 |
Q |
| |
|
|| |||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2835539 |
tacaatgcattca-attaatgccagaaaatggtgtttttgaataatgaatttggtgtttcatttatgtccatttactctcctatcaaattatatatatat |
2835637 |
T |
|
| Q |
218 |
tttccatttgcatgactccaattttagtatttactatgtgtgcattgtttagtttaggttgaaacatttgaaatctctgttttgagtagtataat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2835638 |
tttccatttgcatgactccaattttagtatttactatgtgtgcattgtttagtttaggttgaaacatttgaaatctctg--ttgagtagtataat |
2835730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 2853289 - 2853497
Alignment:
| Q |
18 |
catgaaaagtatcttcagttatttcacaagatatttgtgaaataacttatcaggttcccttttgcaaccagttttaccacctgatgagtctactcagtgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2853289 |
catgaaaagtatcttcagttatttcacaagatatttgtgaaataactcatcaggttcccttttgcaaccagttttaccacctgatgagtctactcagtgt |
2853388 |
T |
|
| Q |
118 |
tataatgcattcacactcaggccagaaaatggtgtttttgaataatgaatttggtgtttcatttatgtccatttactctcctattaaattatatatatat |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2853389 |
taaaatgcattcacactcaggccagaaaatggtgtttttgaataatgaatttggtgtttcatttatgtccatttactctcctattaaattatatatatat |
2853488 |
T |
|
| Q |
218 |
tttccattt |
226 |
Q |
| |
|
||| ||||| |
|
|
| T |
2853489 |
ttttcattt |
2853497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 2800183 - 2800131
Alignment:
| Q |
211 |
tatatattttccatttgcatgactccaattttagtatttactatgtgtgcatt |
263 |
Q |
| |
|
||||||||||||| ||| | | |||||||||||||||||||||| ||||||| |
|
|
| T |
2800183 |
tatatattttccacttgtgttaatccaattttagtatttactatgcgtgcatt |
2800131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 3423 - 3508
Alignment:
| Q |
218 |
tttccatttgcatgactccaattttagtatttactatgtgtgcattgtttagtttaggttgaaacatttgaaatctctgttttgagta |
305 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||| ||| |||||||| ||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
3423 |
tttccatttgtatcgctccagttttagtatttactttgtatgcattgtgtagtt--ggttgaaacatttgaaatctctgttctgagta |
3508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University