View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7417_low_18 (Length: 311)
Name: NF7417_low_18
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7417_low_18 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 6916967 - 6916671
Alignment:
| Q |
13 |
aatatacaagaagcctgccatgattatcacctcatcacagatttacagtcggaagtgcattgataagtgaacaaaaatctaaactagctgaacaatgtat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916967 |
aatatacaagaagcctgccatgattatcacctcatcaca--tttacagtcagaagtgcattgataagtgaacaaaaatctaaactagctgaacaatgtat |
6916870 |
T |
|
| Q |
113 |
gatagaattgaaaatgagcatgtatgtgtcaactaaaatataagaaaacgcaaatatatgataaatttaatattaaatcaagtttcccaataaaaacatt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6916869 |
gatagaattgaaaatgagcatgtatgtgtcaactaaaatataagaaaacgcaaatatatgataaatttaatgttaaatcaagtttcccaataaaaacatt |
6916770 |
T |
|
| Q |
213 |
ggagtgacaccaaattgtacactatcacaattatagctactttttatttgctttcaaaattttgttgacccnnnnnnntgaaccaaaactacaattctt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
6916769 |
ggagtgacaccaaattgtacactatcacaattatagctactttttatttgctttcaaaattttgttgacccaaaaaaatgaaccaaaaccacaattctt |
6916671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 6890724 - 6890644
Alignment:
| Q |
16 |
atacaagaagcctgccatgattatcacctcatcacagatttacagtcggaagtgcattgataagtgaacaaaaatctaaactagctgaa |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| ||||| |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
6890724 |
atacaagaagcctgccatgaatatcacctcat--------tacagtcagaagtacattgacaagtgaaccaaaatctaaactagctgaa |
6890644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University