View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7417_low_19 (Length: 285)
Name: NF7417_low_19
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7417_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 25678842 - 25678601
Alignment:
| Q |
11 |
agaatatggcactcagcctaacaaataagcaagagtcattgatcgaacaagggatatataatggactaaccctttttgttgtggatgtgtagtaattggg |
110 |
Q |
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| T |
25678842 |
agaaaatggcactcagcctaacaaataagcaagagtcattgatcgaacaagggatatataatggactaaccctttttgttgtggatgtgtagtaattggg |
25678743 |
T |
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| Q |
111 |
t---ttgaatcaagaaatgtattgggctttgaggattacaagggtgagttagttggagaaattatttagaaatattgaatttcatatgagcatgaagaga |
207 |
Q |
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| T |
25678742 |
taatttgaatcaagaaatgtattgggttttgaggattacaagagtgagttagttggagaaattatttagaaatattgaatttgatatgagcatgaagaga |
25678643 |
T |
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| Q |
208 |
atggagggaatgtgtaggagaaaaagcatgatggatgaaata |
249 |
Q |
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| T |
25678642 |
atggagtgaatgtgtaggagaaaaagcatgatggatgaaata |
25678601 |
T |
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