View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7417_low_2 (Length: 554)
Name: NF7417_low_2
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7417_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 25 - 185
Target Start/End: Original strand, 20895094 - 20895250
Alignment:
| Q |
25 |
taactcacccttaaacccaagagtttctttctcttttgttattattcaacgaaagaaagcttcacagcaagcaaacggcacttacttaatacaatacaat |
124 |
Q |
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| T |
20895094 |
taactcacccttaaacccaagagtttctttctcttttgttattattcaacgaaagaaagcttcacagcaagcaaacggc----acttaatacaatacaat |
20895189 |
T |
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| Q |
125 |
acaagtggctcactcaatatttccttttcctagtagctcaggaaatttcgtaagaaactcc |
185 |
Q |
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| T |
20895190 |
acaagtggctcactcaatatttccttttccaattagctcaggaaatttcgtaagaaactcc |
20895250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 413 - 478
Target Start/End: Original strand, 20895473 - 20895538
Alignment:
| Q |
413 |
gtaactgtaacttactgctacgaagtaagcactcgctagctgtttgtttgtcttaatttctctcta |
478 |
Q |
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| T |
20895473 |
gtaactgtaacttactgctacgaagtaagcactcgctagctgtttgtttgtcttaatttctctcta |
20895538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 20895326 - 20895366
Alignment:
| Q |
261 |
gcctatctattggagccagaatcataatcttaaagtcggtg |
301 |
Q |
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| T |
20895326 |
gcctatctatcggagccagaatcataatcttaaagtcggtg |
20895366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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