View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7417_low_22 (Length: 267)
Name: NF7417_low_22
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7417_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 49672963 - 49672719
Alignment:
| Q |
1 |
caattcaacactatgtgttgttaatagaaaaaagtagataaaattaagtcatacagcaattaattcctcctaaaaggctaaaaacattaagcatgacaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49672963 |
caattcaacactatgtgttgttaatagaaaaaagtagataaaataaagtcatacagcaattaattcctcctaaaaggctaaaaacattaagcatgacaat |
49672864 |
T |
|
| Q |
101 |
cattctatttaactgnnnnnnnnnnnnnnnnnnnnaaattcgaagagtatcttctctcatggatagatatgaactatcataaaatataatagtatcgtgt |
200 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49672863 |
cattctatttaactg--tattttttatttttttttaacttcgaagagtatcttctctcatggatagatatgaactatcataaaatataatagtatcgtgt |
49672766 |
T |
|
| Q |
201 |
agtttaatcaatccaacctagtaagataatgtttgattgttgtattt |
247 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49672765 |
agtttagtcaatccaacctagtaagataatgtttgattgttgtattt |
49672719 |
T |
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