View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7417_low_25 (Length: 255)
Name: NF7417_low_25
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7417_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 28902202 - 28902433
Alignment:
| Q |
18 |
aaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacgcttcagtcgt |
117 |
Q |
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| T |
28902202 |
aaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacgcttcagtcgt |
28902301 |
T |
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| Q |
118 |
gtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttcgtatgtttcaccactttcccttttattattgac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28902302 |
gtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttcgtatgtttcactactttcccttttattattgac |
28902401 |
T |
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| Q |
218 |
ttcagcttttcactgcacttctttcttctcac |
249 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
28902402 |
ttcagcttttcactgcacttctttctcctcac |
28902433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 26 - 211
Target Start/End: Original strand, 28925848 - 28926033
Alignment:
| Q |
26 |
atcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacgcttcagtcgtgtctctac |
125 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||| | ||| |||| ||||||| |||| ||| || || |||| ||||||||||||| |
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| T |
28925848 |
atcttctttttcttggggtcaaaaagctggtgtttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgtgtctctac |
28925947 |
T |
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| Q |
126 |
caatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttcgtatgtttcaccactttcccttttatt |
211 |
Q |
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| T |
28925948 |
caatatttttaagaaaatctatgagacttcttgaaccccatcctacaaaatcctttttcttatctttcgctactttcccttttatt |
28926033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 28916616 - 28916780
Alignment:
| Q |
20 |
attacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacgcttcagtcgtgt |
119 |
Q |
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||||| ||||||||||||||||||||||||||||||||| | |||||||||| ||||||| |||||||||||| ||| || || |||| ||||||| |
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| T |
28916616 |
attaccatcttctttttcttggggtcaaaaagctggtttttttggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcgtgt |
28916715 |
T |
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| Q |
120 |
ctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttc |
184 |
Q |
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|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28916716 |
cttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttc |
28916780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 184
Target Start/End: Original strand, 28892257 - 28892414
Alignment:
| Q |
27 |
tcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacgcttcagtcgtgtctctacc |
126 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||| ||| || || |||| ||||||||| ||| |
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| T |
28892257 |
tcttctttttcttggggtcaaaaagctggtttttgtggcagtacttactgatgattgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcacc |
28892356 |
T |
|
| Q |
127 |
aatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttc |
184 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
28892357 |
aatatttttaagaaaatctacgagacttcttgaaccccatccaacaaaatcttttttc |
28892414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 28935501 - 28935601
Alignment:
| Q |
74 |
atgatgatccaagcaacatcaagttcagacaacgcttcagtcgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaa |
173 |
Q |
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||||| ||| ||||||||||| |||| | || |||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28935501 |
atgattatcgaagcaacatcatgttccgtaaatgcttttgccgtgtctctaccaatatctttaagaaaatctatgagacttcttgaaccccatccaacaa |
28935600 |
T |
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| Q |
174 |
a |
174 |
Q |
| |
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| |
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| T |
28935601 |
a |
28935601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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