View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7417_low_26 (Length: 253)

Name: NF7417_low_26
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7417_low_26
NF7417_low_26
[»] chr7 (13 HSPs)
chr7 (1-232)||(23983290-23983521)
chr7 (9-106)||(36449287-36449383)
chr7 (1-64)||(28534293-28534355)
chr7 (1-124)||(9427884-9428007)
chr7 (4-78)||(22567897-22567970)
chr7 (51-154)||(9107308-9107410)
chr7 (5-224)||(24324566-24324787)
chr7 (4-99)||(1321012-1321109)
chr7 (1-36)||(9107408-9107443)
chr7 (192-235)||(36449164-36449207)
chr7 (138-224)||(8745244-8745330)
chr7 (1-31)||(48058447-48058477)
chr7 (19-227)||(3478440-3478647)
[»] chr1 (20 HSPs)
chr1 (1-232)||(16577344-16577576)
chr1 (4-95)||(38548844-38548934)
chr1 (8-221)||(41126261-41126462)
chr1 (9-105)||(16148987-16149083)
chr1 (5-95)||(38544524-38544613)
chr1 (1-99)||(32882584-32882683)
chr1 (138-224)||(16147649-16147735)
chr1 (4-78)||(17033810-17033883)
chr1 (5-123)||(49820311-49820427)
chr1 (1-99)||(34775089-34775188)
chr1 (3-78)||(42374386-42374460)
chr1 (1-75)||(46603606-46603678)
chr1 (1-56)||(46768437-46768492)
chr1 (138-224)||(6583120-6583206)
chr1 (138-224)||(31290923-31291009)
chr1 (27-106)||(10785252-10785330)
chr1 (1-37)||(6583016-6583052)
chr1 (71-99)||(24659146-24659174)
chr1 (16-98)||(31290799-31290880)
chr1 (1-33)||(37200386-37200418)
[»] chr2 (25 HSPs)
chr2 (8-232)||(16952154-16952380)
chr2 (8-232)||(17022819-17023045)
chr2 (8-232)||(17060125-17060351)
chr2 (25-250)||(10173368-10173593)
chr2 (42-163)||(20572226-20572346)
chr2 (1-78)||(13699068-13699144)
chr2 (1-95)||(27879916-27880011)
chr2 (138-224)||(34230292-34230378)
chr2 (1-65)||(25504691-25504754)
chr2 (1-69)||(4974992-4975061)
chr2 (1-69)||(4992900-4992969)
chr2 (8-99)||(12343037-12343127)
chr2 (1-224)||(7696053-7696278)
chr2 (2-93)||(15126192-15126283)
chr2 (14-77)||(22884929-22884991)
chr2 (3-123)||(27740153-27740270)
chr2 (11-123)||(43816249-43816359)
chr2 (1-31)||(15360985-15361015)
chr2 (1-123)||(33788414-33788535)
chr2 (152-222)||(41086715-41086785)
chr2 (9-99)||(1269698-1269787)
chr2 (1-33)||(24308518-24308550)
chr2 (1-57)||(37770413-37770469)
chr2 (19-94)||(41086572-41086648)
chr2 (1-53)||(41113502-41113554)
[»] chr5 (15 HSPs)
chr5 (1-241)||(17853836-17854073)
chr5 (1-171)||(26045728-26045901)
chr5 (1-65)||(8731153-8731216)
chr5 (1-95)||(24072050-24072142)
chr5 (1-78)||(39183968-39184044)
chr5 (1-106)||(14302208-14302314)
chr5 (1-88)||(33109962-33110050)
chr5 (22-106)||(33258665-33258750)
chr5 (1-56)||(7682815-7682870)
chr5 (4-96)||(8297694-8297785)
chr5 (1-31)||(22675102-22675132)
chr5 (1-50)||(30097600-30097649)
chr5 (1-37)||(7195065-7195101)
chr5 (193-241)||(24072226-24072274)
chr5 (50-98)||(39024259-39024306)
[»] chr6 (9 HSPs)
chr6 (1-232)||(32935107-32935337)
chr6 (141-224)||(20701710-20701793)
chr6 (1-62)||(17278266-17278326)
chr6 (19-99)||(20701583-20701664)
chr6 (4-44)||(15120370-15120410)
chr6 (4-36)||(16180683-16180715)
chr6 (1-123)||(33968401-33968518)
chr6 (1-31)||(13098352-13098382)
chr6 (50-158)||(21266263-21266369)
[»] chr4 (12 HSPs)
chr4 (1-154)||(12296322-12296475)
chr4 (24-227)||(19673188-19673392)
chr4 (1-106)||(22810925-22811029)
chr4 (2-95)||(46487477-46487570)
chr4 (1-224)||(41117732-41117957)
chr4 (24-227)||(19815009-19815213)
chr4 (12-91)||(20632261-20632339)
chr4 (1-106)||(48098546-48098649)
chr4 (1-106)||(49747739-49747844)
chr4 (1-99)||(38636998-38637095)
chr4 (138-224)||(49528163-49528249)
chr4 (1-37)||(43373871-43373907)
[»] scaffold1613 (1 HSPs)
scaffold1613 (5-95)||(803-892)
[»] chr3 (17 HSPs)
chr3 (1-123)||(27399140-27399261)
chr3 (1-250)||(823201-823450)
chr3 (1-69)||(12086489-12086558)
chr3 (1-97)||(37123601-37123698)
chr3 (7-63)||(32010016-32010072)
chr3 (1-99)||(14194152-14194247)
chr3 (1-95)||(25594313-25594406)
chr3 (81-224)||(39021122-39021267)
chr3 (4-157)||(13018094-13018246)
chr3 (47-106)||(14879648-14879708)
chr3 (138-224)||(25647777-25647863)
chr3 (1-38)||(1652655-1652692)
chr3 (74-119)||(23328188-23328233)
chr3 (1-78)||(40689521-40689597)
chr3 (11-95)||(46358181-46358266)
chr3 (22-97)||(28937498-28937574)
chr3 (19-98)||(33143733-33143813)
[»] chr8 (8 HSPs)
chr8 (1-99)||(10248331-10248430)
chr8 (1-140)||(17720489-17720626)
chr8 (4-106)||(12197842-12197945)
chr8 (4-106)||(12442270-12442373)
chr8 (1-105)||(17656500-17656606)
chr8 (138-224)||(17656906-17656992)
chr8 (1-30)||(25184924-25184953)
chr8 (1-37)||(30235896-30235932)
[»] scaffold0063 (1 HSPs)
scaffold0063 (7-224)||(58218-58439)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-106)||(36920-37023)
[»] scaffold0499 (1 HSPs)
scaffold0499 (1-31)||(6828-6858)
[»] scaffold0119 (1 HSPs)
scaffold0119 (9-99)||(41915-42004)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 23983521 - 23983290
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccg 100  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||     
T  23983521 cacccaccaaaataaacaccaccacctaaaacagactcattcacgaaaacaaccactgaaaaacgatatacataactacccatcatcactactcacccca 23983422  T
Q  101 aaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctc 200  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||||||||| ||||||||||||| |||||||  || ||||||||||    
T  23983421 aaagaagaccgctctaaatgaaattctcggtcctcatcatcaaagctgaaccagatccgaaaagctcatattcgaaagatcattcaactgtcaccacctc 23983322  T
Q  201 tcaacctccgatacaccgaaagaacacaaaaa 232  Q
    ||||||||||||||||||||||||||||||||    
T  23983321 tcaacctccgatacaccgaaagaacacaaaaa 23983290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 36449383 - 36449287
Alignment:
Q  9 aaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 106  Q
    ||||||||||||||||||||||| |||||  |||||| |||| ||| |||||||||||||| ||||||||| ||||||||||||||||| | ||||||    
T  36449383 aaaataaacatcaccacctaaaatagactacttcacg-aaacaaccgctgaaaaacgatatccataaccactcatcgtcactactcaccacaaaagaa 36449287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 28534293 - 28534355
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaac 64  Q
    |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  28534293 cacccaccaaaataaacatcaccacctaaaacagactctttcacg-aaacgaccactgaaaaac 28534355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 9427884 - 9428007
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccg 100  Q
    |||| ||||||||||||||||| |||||||||| | |  |||||| | || |||||| ||||| ||||| ||||||||||| ||||||||||||| |||     
T  9427884 cacctaccaaaataaacatcactacctaaaacaaattctttcacgaagacaaccactaaaaaatgatatccataaccacccgtcgtcactactcatccct 9427983  T
Q  101 aaagaagaccgctctaaatgaaat 124  Q
    ||| |  | | |||||||||||||    
T  9427984 aaatagcatccctctaaatgaaat 9428007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 22567897 - 22567970
Alignment:
Q  4 ccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 78  Q
    ||||||||||| ||||||||||||||||||||||  |||||| |||| |||||||||||||| ||| ||||||||    
T  22567897 ccaccaaaatacacatcaccacctaaaacagactctttcacg-aaacaaccactgaaaaacggtatccataacca 22567970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 9107410 - 9107308
Alignment:
Q  51 gaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaa 150  Q
    ||||| || |||||||||| ||||||||||||||| ||||||||| ||| ||| ||  || ||||||||||||  | | ||||||||||||||||||||     
T  9107410 gaccattggaaaacgatatccataaccacccatcgccactactcatcccaaaataactcccctctaaatgaaacac-ccatcctcatcaccaaagttgag 9107312  T
Q  151 ccac 154  Q
    ||||    
T  9107311 ccac 9107308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 24324566 - 24324787
Alignment:
Q  5 caccaaaataaacatcaccacctaaaacagacttattcacgtaaa-cgaccactgaaa-aacgatatacataaccacccatcgtcactactcaccccgaa 102  Q
    |||||||||| || ||||||| |||||||||||  |||||| ||| |||||| || || |||||||| ||  |||||| |||||||||||||||||| ||    
T  24324566 caccaaaatacacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaagaacgatatcca--accacc-atcgtcactactcacccctaa 24324662  T
Q  103 ag---aagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacct 199  Q
    ||   || ||| ||| |||| ||| ||||  |||| | |||||||| ||| ||||| ||||||| ||| ||  ||||| ||||||| |||  |||||||     
T  24324663 agaaaaacacccctcaaaataaaactctccgtcctgaacaccaaagctgagccacagccgaaaagctcctaaccgaaagatcattcagcttccaccaccc 24324762  T
Q  200 ctcaacctccgatacaccgaaagaa 224  Q
    ||| ||||||||| |||| ||||||    
T  24324763 ctcgacctccgatccacctaaagaa 24324787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 1321109 - 1321012
Alignment:
Q  4 ccaccaaaataaacatcaccacctaaaacagacttatt-cacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    ||||||||||| |||||||||||||||||||||   || |||| || | ||||||| |||||||||||  |  ||||| |||||||||||||||||||    
T  1321109 ccaccaaaatacacatcaccacctaaaacagacccctttcacgaaagcaaccactgtaaaaacgatatctaataccactcatcgtcactactcacccc 1321012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9107443 - 9107408
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagac 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  9107443 cacccaccaaaataagcatcaccacctaaaacagac 9107408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 36449207 - 36449164
Alignment:
Q  192 caccacctctcaacctccgatacaccgaaagaacacaaaaataa 235  Q
    ||||||||||||||||||||| ||||||||||| || |||||||    
T  36449207 caccacctctcaacctccgatccaccgaaagaaaaccaaaataa 36449164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 8745330 - 8745244
Alignment:
Q  138 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 224  Q
    |||||||| ||| ||||||||||||| ||| |||  |||| ||||| | |||  ||| ||||||| ||||||||| |||||||||||    
T  8745330 caccaaagctgagccacatccgaaaagctcctatctgaaagatcatgcagcttccacaacctctcgacctccgatccaccgaaagaa 8745244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 48058447 - 48058477
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  48058447 cacccaccaaaataaacatcaccacctaaaa 48058477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 3478647 - 3478440
Alignment:
Q  19 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaa 117  Q
    |||||| || |||||||| | |||||| | ||||| |||| |||| |||||| ||| |||| || ||||||||||||||||| |||||| ||  ||| ||    
T  3478647 tcaccaactcaaacagacgtcttcacgaatacgac-actgtaaaagcgatatccatcaccaaccgtcgtcactactcacccc-aaagaacactcctcaaa 3478550  T
Q  118 atgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacacc 217  Q
    || ||| || |  |||||| |||||||| | | |||  || |||||  ||| || ||||| ||||||| |||  | ||||||||| | ||||||| ||||    
T  3478549 attaaactcccagtcctcaacaccaaagcttagccaactcagaaaagttcacatccgaaagatcattcagcttccgccacctctcgatctccgatccacc 3478450  T
Q  218 gaaagaacac 227  Q
    ||||||||||    
T  3478449 gaaagaacac 3478440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 16577576 - 16577344
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaac-gatatacataaccacccatcgtcactactcacccc 99  Q
    ||||||||||||||||||||| |||||||||||||||  |||||| ||||||||||| |||||  ||||| ||||||||  ||||||| |||||||| ||    
T  16577576 cacccaccaaaataaacatcatcacctaaaacagactctttcacgaaaacgaccactcaaaaaatgatatccataaccattcatcgtccctactcactcc 16577477  T
Q  100 gaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacct 199  Q
     |||||| ||| ||||||| |||| | ||  ||  ||||||||||||||| ||||||||||||| ||| ||||| ||| ||||||| |||  ||||||||    
T  16577476 aaaagaacacccctctaaaagaaactttcagtcaccatcaccaaagttgagccacatccgaaaagctcctattccaaagatcattcagcttccaccacct 16577377  T
Q  200 ctcaacctccgatacaccgaaagaacacaaaaa 232  Q
    |||||||||| ||  ||||||||||| ||||||    
T  16577376 ctcaacctccaatctaccgaaagaacgcaaaaa 16577344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 38548844 - 38548934
Alignment:
Q  4 ccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 95  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||||| |||||||||||||||| |||||||||||||||||||||||||    
T  38548844 ccaccaaaataaacatcaccacctaaaacagactctttcacg-aaacgatcactgaaaaacgatattcataaccacccatcgtcactactca 38548934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 41126261 - 41126462
Alignment:
Q  8 caaaataaacatcaccacctaaaacagacttattcacgtaaacga-ccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 106  Q
    ||||||| | |||||||||||||||||||  ||||||| |||| | |||||| |||||||||| ||| ||||||||||||||||||||||||            
T  41126261 caaaatacatatcaccacctaaaacagacgcattcacgaaaacaaaccactgtaaaacgatatccatcaccacccatcgtcactactcaccc-------- 41126352  T
Q  107 gaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacc 206  Q
         |||||||||||| ||||  ||||||||||||||||||| ||||||| ||||| ||| ||| | ||| ||| ||| |||  || ||||||||||||    
T  41126353 -----ctctaaatgaaactctcagtcctcatcaccaaagttgatccacatctgaaaagctcctatccaaaagatcgttcagcttccagcacctctcaacc 41126447  T
Q  207 tccgatacaccgaaa 221  Q
    ||| || ||||||||    
T  41126448 tccaatccaccgaaa 41126462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 16149083 - 16148987
Alignment:
Q  9 aaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaaga 105  Q
    |||||| || ||||||||||||||||||   |||| ||||||||| ||||||||||||||| || || ||||||||||||||||||||||| |||||    
T  16149083 aaaatacacgtcaccacctaaaacagacaccttcatgtaaacgactactgaaaaacgatatccaaaagcacccatcgtcactactcacccccaaaga 16148987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 38544524 - 38544613
Alignment:
Q  5 caccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 95  Q
    |||||||||||||||||||||||||||||||||  ||||||  || || ||||| |||||||||| ||||||||| |||||||||||||||    
T  38544524 caccaaaataaacatcaccacctaaaacagactctttcacg-gaatgatcactggaaaacgatatccataaccactcatcgtcactactca 38544613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 32882683 - 32882584
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    |||||||||||||| |||||||| |||||||| ||||  |||||| |||||| ||||| ||| ||||||| ||  |||||||||||||||||||||||||    
T  32882683 cacccaccaaaatatacatcaccgcctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacaccacccatcgtcactactcacccc 32882584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 16147735 - 16147649
Alignment:
Q  138 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 224  Q
    |||||||| ||| ||||||||||||| |||||||  |||| |||||||  || |||||||||||| |||||||||  ||||||||||    
T  16147735 caccaaagctgagccacatccgaaaagctcatatctgaaagatcattcaactttcaccacctctccacctccgatctaccgaaagaa 16147649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 17033883 - 17033810
Alignment:
Q  4 ccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 78  Q
    |||| ||||||||||| ||||||||||||| |||  |||||| ||||||||||| ||||||| ||||||||||||    
T  17033883 ccacgaaaataaacattaccacctaaaacatactctttcacg-aaacgaccacttaaaaacggtatacataacca 17033810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 49820427 - 49820311
Alignment:
Q  5 caccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaag 104  Q
    ||||||||||||||||||||||||||| |||||  || | | |||||| |||||||||||||||| ||||||||||| ||| ||| || || ||| |||     
T  49820427 caccaaaataaacatcaccacctaaaaaagactcctt-atg-aaacgagcactgaaaaacgatatccataaccacccgtcgccaccacacatcccaaaat 49820330  T
Q  105 aagaccgctctaaatgaaa 123  Q
    |  ||| ||||||||||||    
T  49820329 atcacccctctaaatgaaa 49820311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 34775188 - 34775089
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    |||||||||||||| || ||| |||||||||||||||  |||||| ||||||| |||| |||||||| || |   || |||| |||||||||||||||||    
T  34775188 cacccaccaaaatacacgtcatcacctaaaacagactccttcacgaaaacgacaactgtaaaaacgaaatcccacactacccgtcgtcactactcacccc 34775089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 42374460 - 42374386
Alignment:
Q  3 cccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 78  Q
    |||||||| |||||||||||||||||||||| | |  |||||| ||||||||||||||||||  ||| ||||||||    
T  42374460 cccaccaagataaacatcaccacctaaaacaaattccttcacg-aaacgaccactgaaaaactgtatccataacca 42374386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 46603678 - 46603606
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataa 75  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||||| || ||| ||| |||||    
T  46603678 cacccaccaaaataaa-atcaccatctaaaacagacttcttcacg-aaacgaccactggaacacgttatccataa 46603606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 46768492 - 46768437
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccac 56  Q
    |||||||||||||  || |||||||||||||||||||  |||||| ||||||||||    
T  46768492 cacccaccaaaattcacgtcaccacctaaaacagactccttcacgaaaacgaccac 46768437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 6583120 - 6583206
Alignment:
Q  138 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 224  Q
    |||||||| ||| || |||||||||| ||| |||  |||| |||| || |||  ||||||||||| ||||||||| |||||||||||    
T  6583120 caccaaagctgagccgcatccgaaaagctcctatctgaaagatcaatcagcttccaccacctctcgacctccgattcaccgaaagaa 6583206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 31290923 - 31291009
Alignment:
Q  138 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 224  Q
    |||||||| ||| ||||||||||||| ||| ||| ||||| ||||  |  ||  ||||||||||| ||||||||| |||||||||||    
T  31290923 caccaaagctgagccacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctctcgacctccgatccaccgaaagaa 31291009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 10785252 - 10785330
Alignment:
Q  27 taaaacagacttattcacgtaaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaa 106  Q
    |||||||||||  |||||| |||||||  |||||||| |||||| ||  ||||||||||||||||||||| |||| |||||    
T  10785252 taaaacagactccttcacgaaaacgacatctgaaaaaacgatatcca--accacccatcgtcactactcatcccgcaagaa 10785330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6583016 - 6583052
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagact 37  Q
    |||||||||||||| || |||||||||||||||||||    
T  6583016 cacccaccaaaatacacgtcaccacctaaaacagact 6583052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 24659174 - 24659146
Alignment:
Q  71 cataaccacccatcgtcactactcacccc 99  Q
    |||||||||||||||||||||||||||||    
T  24659174 cataaccacccatcgtcactactcacccc 24659146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 31290799 - 31290880
Alignment:
Q  16 acatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccc 98  Q
    ||||||||||||||| ||||||  ||| || |||||||||||| ||||| ||||  |  ||||| |||||||||||||||||||    
T  31290799 acatcaccacctaaatcagactccttcgcgaaaacgaccactgtaaaaatgatagcc--aaccatccatcgtcactactcaccc 31290880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37200418 - 37200386
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaaca 33  Q
    ||||||| |||||||||||||||||||||||||    
T  37200418 cacccactaaaataaacatcaccacctaaaaca 37200386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 16952154 - 16952380
Alignment:
Q  8 caaaataaacatcaccacctaaaacagacttattcacgtaaacgacc-actg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaaga 105  Q
    |||||||||||||||||| ||||||||||   |||||| |||| | | |||| ||||| ||||| ||| ||||| ||||||||||||||||||| |||||    
T  16952154 caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaaga 16952253  T
Q  106 agaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaac 205  Q
    | ||| |||||||||||| || |  |||||| |||||||||||| ||||||||||||| ||| ||| ||||| ||| ||  |||  ||||||||||||||    
T  16952254 acacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaac 16952353  T
Q  206 ctccgatacaccgaaagaacacaaaaa 232  Q
    ||||||| |||||||||||||| ||||    
T  16952354 ctccgatccaccgaaagaacaccaaaa 16952380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 17022819 - 17023045
Alignment:
Q  8 caaaataaacatcaccacctaaaacagacttattcacgtaaacgacc-actg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaaga 105  Q
    |||||||||||||||||| ||||||||||   |||||| |||| | | |||| ||||| ||||| ||| ||||| ||||||||||||||||||| |||||    
T  17022819 caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaaga 17022918  T
Q  106 agaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaac 205  Q
    | ||| |||||||||||| || |  |||||| |||||||||||| ||||||||||||| ||| ||| ||||| ||| ||  |||  ||||||||||||||    
T  17022919 acacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaac 17023018  T
Q  206 ctccgatacaccgaaagaacacaaaaa 232  Q
    ||||||| |||||||||||||| ||||    
T  17023019 ctccgatccaccgaaagaacaccaaaa 17023045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 17060125 - 17060351
Alignment:
Q  8 caaaataaacatcaccacctaaaacagacttattcacgtaaacgacc-actg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaaga 105  Q
    |||||||||||||||||| ||||||||||   |||||| |||| | | |||| ||||| ||||| ||| ||||| ||||||||||||||||||| |||||    
T  17060125 caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaaga 17060224  T
Q  106 agaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaac 205  Q
    | ||| |||||||||||| || |  |||||| |||||||||||| ||||||||||||| ||| ||| ||||| ||| ||  |||  ||||||||||||||    
T  17060225 acacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaac 17060324  T
Q  206 ctccgatacaccgaaagaacacaaaaa 232  Q
    ||||||| |||||||||||||| ||||    
T  17060325 ctccgatccaccgaaagaacaccaaaa 17060351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 250
Target Start/End: Original strand, 10173368 - 10173593
Alignment:
Q  25 cctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 123  Q
    |||||||||||| | |||| | ||||||| |||| ||||||||||||||  ||||| ||||||||||||||||||| |||||| ||  ||| |||| |||    
T  10173368 cctaaaacagacgtcttcatgaaaacgactactgtaaaaacgatatacaacaccactcatcgtcactactcacccc-aaagaatactcctcaaaattaaa 10173466  T
Q  124 ttctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaaga 223  Q
     ||||  |||||| |||||||| ||| ||||||||||||| ||||||||| ||| |||||||  ||  ||||||||||| ||||||||| ||||||||||    
T  10173467 ctctcagtcctcaacaccaaagctgagccacatccgaaaagctcatattcaaaagatcattcaacttccaccacctctcgacctccgattcaccgaaaga 10173566  T
Q  224 acacaaaaataaccccaacaccaaact 250  Q
    |||| || | || ||||| ||||||||    
T  10173567 acaccaacaaaagcccaaaaccaaact 10173593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 20572346 - 20572226
Alignment:
Q  42 cacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcacc 141  Q
    |||| ||||||||||||||||||||||| |||||||||| |||| ||||||||||| | |||||| ||| |||||||||||| ||||  ||||||||||     
T  20572346 cacgaaaacgaccactgaaaaacgatatccataaccacc-atcgccactactcacctcaaaagaacacccctctaaatgaaactctcattcctcatcact 20572248  T
Q  142 aaagttgaaccacatccgaaaa 163  Q
    |||| | ||||| |||||||||    
T  20572247 aaagctaaaccatatccgaaaa 20572226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 13699068 - 13699144
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 78  Q
    ||||||||||||||||||||||||||||||||| |||  || ||| ||||||||||||||||||| ||||||||||||    
T  13699068 cacccaccaaaataaacatcaccacctaaaacacactcttttacg-aaacgaccactgaaaaacggtatacataacca 13699144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 27879916 - 27880011
Alignment:
Q  1 cacccaccaaaa-taaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 95  Q
    |||||||||||| |||||||||||||||||||||||||  |||| | |||||||| ||||||||||| || ||||||||| ||||  |||||||||    
T  27879916 cacccaccaaaaataaacatcaccacctaaaacagactccttcaggaaaacgacctctgaaaaacgaaatccataaccactcatcaccactactca 27880011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 34230378 - 34230292
Alignment:
Q  138 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 224  Q
    |||||||||||| ||||||| ||||| ||| |||| |||| ||||||| |||  ||||||||||||||||||||| |||||||||||    
T  34230378 caccaaagttgagccacatctgaaaagctcttatttgaaagatcattcagcttccaccacctctcaacctccgatccaccgaaagaa 34230292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 25504691 - 25504754
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacg 65  Q
    ||||||||||||||||||||||||||||||||||| |  |||||| |||||||||||||||||||    
T  25504691 cacccaccaaaataaacatcaccacctaaaacagagtctttcacg-aaacgaccactgaaaaacg 25504754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4975061 - 4974992
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatat 69  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  4975061 cacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatat 4974992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4992969 - 4992900
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatat 69  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  4992969 cacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatat 4992900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 12343127 - 12343037
Alignment:
Q  8 caaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    ||||||| || |||||||||||||||||||  |||||| |||||||| ||| ||||||||||| |  |||||| |||||||||||||||||||    
T  12343127 caaaatacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatcc--aaccactcatcgtcactactcacccc 12343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7696278 - 7696053
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    |||||||||||||| |||||||||||||||| | |||  |||||| ||||||||| || ||||| ||||| |  |||||| |||||||||||||||| ||    
T  7696278 cacccaccaaaatacacatcaccacctaaaataaactccttcacgaaaacgaccaatgtaaaaatgatattc--aaccactcatcgtcactactcactcc 7696181  T
Q  100 ----gaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcacc 195  Q
        |||| || ||| ||  |||| ||| ||  | |||| | |||||||||||| ||||||||  ||| ||| ||| ||||| ||||||| |||  ||||    
T  7696180 cttagaaa-aacacccctaaaaataaaactcctggtcctgaacaccaaagttgagccacatcctcaaatctcctatccgaaagatcattcagcttccacc 7696082  T
Q  196 acctctcaacctccgatacaccgaaagaa 224  Q
    ||||| | |||| |||| |||||||||||    
T  7696081 acctcccgaccttcgatccaccgaaagaa 7696053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 15126192 - 15126283
Alignment:
Q  2 acccaccaaaataaacatcaccacct-aaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactact 93  Q
    |||||||||||||||||||||||||| |||||| |||  |||||| |||| ||| || |||||| | || ||||||||||||||| |||||||    
T  15126192 acccaccaaaataaacatcaccacctaaaaacaaactcgttcacg-aaaccacccctaaaaaacaaaatccataaccacccatcgccactact 15126283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 22884929 - 22884991
Alignment:
Q  14 aaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacc 77  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||| |||||| || |||||||    
T  22884929 aaacatcaccacctaaaacagactccttcacg-aaacgaccactgacaaacgaaatccataacc 22884991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 27740270 - 27740153
Alignment:
Q  3 cccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaa 102  Q
    |||| ||||||||||  |||||||||| ||| |||  |||||| |||| ||||||||| |||||||| ||||||||| | ||| ||||||||| |||  |    
T  27740270 cccatcaaaataaac--caccacctaatacaaactccttcacg-aaactaccactgaagaacgatattcataaccactcgtcgccactactcatcccaga 27740174  T
Q  103 agaagaccgctctaaatgaaa 123  Q
    | || ||| ||||||||||||    
T  27740173 ataacacccctctaaatgaaa 27740153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 43816249 - 43816359
Alignment:
Q  11 aataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagacc 110  Q
    ||||||||||||||||||||| |||||  |||||| |||| |||||||||||||| ||| ||||  ||  ||||| ||||||||  ||||||| || ||     
T  43816249 aataaacatcaccacctaaaatagactctttcacg-aaacaaccactgaaaaacggtatccatacaca-gcatcgccactactcctcccgaaaaaacact 43816346  T
Q  111 gctctaaatgaaa 123  Q
     ||||||||||||    
T  43816347 cctctaaatgaaa 43816359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 15361015 - 15360985
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  15361015 cacccaccaaaataaacatcaccacctaaaa 15360985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 33788414 - 33788535
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccg 100  Q
    ||||||| |||||||||||  ||||||||||||| ||  | |||| |||| |||||||| |||| | || ||||||||||  ||| ||||||||  |||     
T  33788414 cacccactaaaataaacattgccacctaaaacaggctcctccacg-aaacaaccactgacaaacaaaatccataaccacctgtcgccactactcgtccca 33788512  T
Q  101 aaagaagaccgctctaaatgaaa 123  Q
    ||| || ||| ||||||||||||    
T  33788513 aaataacacccctctaaatgaaa 33788535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 41086715 - 41086785
Alignment:
Q  152 cacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaag 222  Q
    ||||||| |||| ||| ||| ||||| ||||||| |||  ||||||||||| ||||||||| |||||||||    
T  41086715 cacatccaaaaagctcttatccgaaagatcattcagcttccaccacctctcgacctccgatccaccgaaag 41086785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 1269787 - 1269698
Alignment:
Q  9 aaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    |||||| |||||||||||||||||| | |  ||| || |||||||| ||  ||||||||||| ||  |||||||||||||||||||| ||||    
T  1269787 aaaatacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatcca--accacccatcgtcactactcgcccc 1269698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 24308518 - 24308550
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaaca 33  Q
    ||||||||||||||||||||| |||||||||||    
T  24308518 cacccaccaaaataaacatcatcacctaaaaca 24308550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 37770413 - 37770469
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccact 57  Q
    |||||||||||||  || |||||||||||||||||||  |||||| |||| ||||||    
T  37770413 cacccaccaaaatccacgtcaccacctaaaacagactccttcacgaaaaccaccact 37770469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 41086572 - 41086648
Alignment:
Q  19 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 94  Q
    ||||||||||||||||||   || ||| || ||||||||  ||||||||||| ||  ||||||||||||||||||||    
T  41086572 tcaccacctaaaacagaccccttaacgaaagcgaccactctaaaaacgatatccaataccacccatcgtcactactc 41086648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 41113502 - 41113554
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgac 53  Q
    ||||||||||||||||| | || ||||||||||||||  |||||| |||||||    
T  41113502 cacccaccaaaataaacgttactacctaaaacagactccttcacgaaaacgac 41113554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 17853836 - 17854073
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccg 100  Q
    |||||||||||||||||||||||  ||||||||||||  || ||| |||||| |||||||||||||||| ||||||||||||||  |||||||||||||     
T  17853836 cacccaccaaaataaacatcaccttctaaaacagactcctttacg-aaacgatcactgaaaaacgatatccataaccacccatcaccactactcacccca 17853934  T
Q  101 aaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctc 200  Q
    |||| ||||  ||||||||||||  | | ||||||||||||| || ||| |||||||||||||  |||||||| ||| |||||||  ||  |||||||||    
T  17853935 aaagtagacacctctaaatgaaacac-caatcctcatcaccatagctgagccacatccgaaaa-gtcatattctaaagatcattcaacttccaccacctc 17854032  T
Q  201 tcaacctccgatacaccgaaagaacacaaaaataaccccaa 241  Q
    ||||| || | | |||||||||||||  ||||||| |||||    
T  17854033 tcaacttcaggtccaccgaaagaacattaaaataagcccaa 17854073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 26045728 - 26045901
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    |||||||||||||  || |||||||||||||||||||| |||| | ||| |||||| | |||||||| || ||  ||| |||||||||||||||||||||    
T  26045728 cacccaccaaaattcacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactcacccc 26045827  T
Q  100 ga--aagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatat 171  Q
     |  || || ||| ||| |||| ||| |||| ||||| | ||||||||||||  ||| |||||||| |||||||    
T  26045828 aaagaaaaacacccctcaaaattaaactctcaatcctaaacaccaaagttgagtcacctccgaaaagctcatat 26045901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8731216 - 8731153
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacg 65  Q
    ||||||||||||||||||||||||||||||||||| |  |||||| |||||||||||||||||||    
T  8731216 cacccaccaaaataaacatcaccacctaaaacagagtctttcacg-aaacgaccactgaaaaacg 8731153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 24072050 - 24072142
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 95  Q
    ||||||||||||||||||||||||| |||||||| | |  ||||| ||||||||||| |||||||||||  || | |||||||||||||||||||    
T  24072050 cacccaccaaaataaacatcaccacataaaacagtc-tcctcacg-aaacgaccactaaaaaacgatatctatgatcacccatcgtcactactca 24072142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 39183968 - 39184044
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 78  Q
    ||||||| |||||||| ||||||||||||||||||||   ||||| ||||||||||||||||||| ||| ||||||||    
T  39183968 cacccactaaaataaagatcaccacctaaaacagactctatcacg-aaacgaccactgaaaaacggtatccataacca 39184044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 14302208 - 14302314
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    |||||||||||||| || ||||||||||||||||| |  ||| || ||||||||| || ||||||||||| ||  ||||||  ||||||||||||| |||    
T  14302208 cacccaccaaaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactcatccc 14302307  T
Q  100 gaaagaa 106  Q
     ||||||    
T  14302308 caaagaa 14302314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 33109962 - 33110050
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtca 88  Q
    |||||||||||||| || ||| ||||||||||| ||   |||||| |||||||||||| ||||||||||| ||  ||||||||||||||    
T  33109962 cacccaccaaaatacacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaaaacgatatccaataccacccatcgtca 33110050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 33258665 - 33258750
Alignment:
Q  22 ccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 106  Q
    ||||||||||||||  | |||||| || ||||||||| ||||||||||| ||  |||| |||||| ||||||||||||| ||||||    
T  33258665 ccacctaaaacagatctcttcacgaaagcgaccactgtaaaaacgatatccaataccatccatcgccactactcacccctaaagaa 33258750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7682870 - 7682815
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccac 56  Q
    |||||||||||||| |||||||||||||||| |||||  |||||  ||||||||||    
T  7682870 cacccaccaaaatacacatcaccacctaaaatagactctttcacaaaaacgaccac 7682815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 8297785 - 8297694
Alignment:
Q  4 ccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcac 96  Q
    ||||||||||| |||||||||||||||||| |||  |||| | ||| ||||| || ||||||||| | |  ||||||| |||||||||||||||    
T  8297785 ccaccaaaatacacatcaccacctaaaacacactccttcaagaaaaagaccaatgtaaaaacgatttcc--aaccacctatcgtcactactcac 8297694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 22675102 - 22675132
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  22675102 cacccaccaaaataaacatcaccacctaaaa 22675132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30097649 - 30097600
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaac 50  Q
    |||||||||||||| || |||||||||||||||||||  |||||| ||||    
T  30097649 cacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 30097600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7195065 - 7195101
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagact 37  Q
    |||||||||||||| || |||||||||||||||||||    
T  7195065 cacccaccaaaatacacgtcaccacctaaaacagact 7195101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 24072226 - 24072274
Alignment:
Q  193 accacctctcaacctccgatacaccgaaagaacacaaaaataaccccaa 241  Q
    ||||||| |||||||||| | |||||||||||||| |||| ||||||||    
T  24072226 accacctttcaacctccggtccaccgaaagaacaccaaaaaaaccccaa 24072274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 39024259 - 39024306
Alignment:
Q  50 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccc 98  Q
    |||||| ||||||||||||| ||||| ||| ||||||||||||||||||    
T  39024259 cgaccattgaaaaacgatatccataa-cactcatcgtcactactcaccc 39024306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 32935107 - 32935337
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccg 100  Q
    |||||||||||||||||| |||||||||||| |||||  || ||| ||||| || || |||||||||||||||||||||||||| |||||||| |||||     
T  32935107 cacccaccaaaataaacaccaccacctaaaatagactccttaacgaaaacgccccctcaaaaacgatatacataaccacccatcatcactactgacccc- 32935205  T
Q  101 aaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctc 200  Q
    ||| || | | |||||||||||| || |  | ||||||||||||| |||   ||||||||||| ||||| ||||||| ||||| | |||  |||||||||    
T  32935206 aaaaaacatccctctaaatgaaactcacagtgctcatcaccaaagctgagttacatccgaaaaactcatgttcgaaagatcatgcagcttccaccacctc 32935305  T
Q  201 tcaacctccgatacaccgaaagaacacaaaaa 232  Q
     ||||||  ||  |||||||||||||| ||||    
T  32935306 ccaacctttgaaccaccgaaagaacactaaaa 32935337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 20701710 - 20701793
Alignment:
Q  141 caaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 224  Q
    ||||||||| |||||| |||||| ||| ||| ||||| ||||||| |||  ||| ||||||| ||||||||| |||||||||||    
T  20701710 caaagttgagccacattcgaaaagctcctatccgaaagatcattcagcttccactacctctcgacctccgatccaccgaaagaa 20701793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17278266 - 17278326
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaa 62  Q
    ||||||||||||||||||| |||||||||| ||||||  |||||| |||||| |||||||||    
T  17278266 cacccaccaaaataaacattaccacctaaatcagactccttcacg-aaacgaacactgaaaa 17278326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 20701583 - 20701664
Alignment:
Q  19 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    |||||||||| |||||||  ||||||| || | ||||||| ||||||||||| ||  || ||||||||||||||||||||||    
T  20701583 tcaccacctataacagacccattcacgaaagcaaccactgtaaaaacgatatccaatactacccatcgtcactactcacccc 20701664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 15120370 - 15120410
Alignment:
Q  4 ccaccaaaataaacatcaccacctaaaacagacttattcac 44  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  15120370 ccaccaaaatacacatcaccacctaaaacagactcattcac 15120410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 16180683 - 16180715
Alignment:
Q  4 ccaccaaaataaacatcaccacctaaaacagac 36  Q
    |||||||||||||||||||||||||||||||||    
T  16180683 ccaccaaaataaacatcaccacctaaaacagac 16180715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 33968401 - 33968518
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccg 100  Q
    |||||||||||||| ||||||||   |||||||||||  || ||  ||||||||||||||||| | ||| ||||||||  |||| |||||||||| |||     
T  33968401 cacccaccaaaatagacatcacc---taaaacagactcttttaca-aaacgaccactgaaaaatggtatccataacca-gcatcatcactactcatccca 33968495  T
Q  101 aaagaagaccgctctaaatgaaa 123  Q
    ||| || ||| ||||||||||||    
T  33968496 aaataacacccctctaaatgaaa 33968518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 13098352 - 13098382
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  13098352 cacccaccaaaataaacatcaccacctaaaa 13098382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 21266369 - 21266263
Alignment:
Q  50 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttga 149  Q
    ||||||||||||||||| || || ||| ||| |||||||||||||||||| || ||| |||| | |||| ||||  ||| ||||||| |||||||  |||    
T  21266369 cgaccactgaaaaacgacatccagaacaacc-atcgtcactactcaccccaaaggaacaccgttgtaaaagaaa-actcaatcctcaacaccaaaactga 21266272  T
Q  150 accacatcc 158  Q
     ||||||||    
T  21266271 gccacatcc 21266263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 12296475 - 12296322
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaa-cagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    ||||||||||||||||||||||||||||||| ||||||  ||  || || |||||||||||||||||||| ||||||||||||||| ||||||||| |||    
T  12296475 cacccaccaaaataaacatcaccacctaaaaacagactcctttccg-aagcgaccactgaaaaacgatatccataaccacccatcgccactactcatccc 12296377  T
Q  100 gaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccac 154  Q
     ||| || ||| ||||||||||||  |||  ||||||||||| ||||||| ||||    
T  12296376 aaaataacacccctctaaatgaaacactccgtcctcatcacctaagttgagccac 12296322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 19673392 - 19673188
Alignment:
Q  24 acctaaaacagacttattcacgtaaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaa 122  Q
    |||| |||||||| | |||||| ||| |||||||| |||| | |||| ||  |||| || ||||||||||||||||| |||||| ||  ||| |||| ||    
T  19673392 acctcaaacagacgtcttcacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcgtcactactcacccccaaagaacactcctcaaaattaa 19673293  T
Q  123 attctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaag 222  Q
    | ||||  |||||| |||||||||| | |||||||||||||  |||||| | ||||||||||  |||  ||||| || || |||  |||| |||||||||    
T  19673292 actctcagtcctcaacaccaaagtttagccacatccgaaaagttcatatccaaaatatcatttagcttccaccatctatcgaccgtcgatccaccgaaag 19673193  T
Q  223 aacac 227  Q
    |||||    
T  19673192 aacac 19673188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 22810925 - 22811029
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    |||||||||||||| || ||||| |||||||||||||  |||||| || ||||||||| ||||||||||| |   |||| ||||||||||||||||||||    
T  22810925 cacccaccaaaatacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcc--taccatccatcgtcactactcacccc 22811022  T
Q  100 gaaagaa 106  Q
     ||||||    
T  22811023 caaagaa 22811029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 46487570 - 46487477
Alignment:
Q  2 acccaccaaaataaacatcaccacctaaaa-cagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 95  Q
    |||||||||||||||||||||| ||||||| ||||||  |||| | || |||||||||||||||||||| |||||||||  |||| |||||||||    
T  46487570 acccaccaaaataaacatcacctcctaaaaacagactccttcatg-aagcgaccactgaaaaacgatattcataaccacatatcgccactactca 46487477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 41117732 - 41117957
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    |||||||||||||| | ||||||||||| |||||||| || |||| |||| |||  || ||||||||||| |  ||||||||||||||| ||||||||||    
T  41117732 cacccaccaaaatacatatcaccacctagaacagactcatgcacgaaaacaaccgttgtaaaaacgatatcc--aaccacccatcgtcattactcacccc 41117829  T
Q  100 ----gaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcacc 195  Q
        |||| || ||| |||  ||| ||| || ||||| | | |||||||  ||| |||| |||| ||| ||| ||||||||| ||||||| |||  ||||    
T  41117830 tttagaaa-aacacccctcagaataaaactcccgatcatgaacaccaaacctgagccacctccgcaaagctcctattcgaaagatcattcagcttccacc 41117928  T
Q  196 acctctcaacctccgatacaccgaaagaa 224  Q
    ||||||| ||||| ||| || ||||||||    
T  41117929 acctctcgacctctgatccatcgaaagaa 41117957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 19815009 - 19815213
Alignment:
Q  24 acctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaa 122  Q
    |||| |||||||| | |||||| ||| |||||| | ||||| ||||| ||  |||| || | ||||||||||||||| |||||| ||  ||| | || ||    
T  19815009 acctcaaacagacgtcttcacgaaaatgaccacggtaaaaatgatatccaataccatccgttgtcactactcacccccaaagaacacttctcaagattaa 19815108  T
Q  123 attctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaag 222  Q
    | ||||  |||||| |||||||||| | ||||||| |||||  || ||| ||||| ||||||  |||  ||||| ||||| ||||||| | |||||||||    
T  19815109 actctcagtcctcaacaccaaagtttagccacatcggaaaagttcctatccgaaagatcatttagcttccaccatctctcgacctccggtccaccgaaag 19815208  T
Q  223 aacac 227  Q
    |||||    
T  19815209 aacac 19815213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 20632261 - 20632339
Alignment:
Q  12 ataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcacta 91  Q
    |||||||||||| |||||||||||||  |||||  |||| ||||||||| ||||||| |||||||||||| ||| |||||    
T  20632261 ataaacatcaccccctaaaacagactctttcaca-aaacaaccactgaagaacgatacacataaccacccgtcgccacta 20632339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 48098649 - 48098546
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    ||||||||||| || || |||||||||||||||  |||  ||||  |||||||||||| ||||||||||| ||| || |||| |||||||||||||||||    
T  48098649 cacccaccaaa-tacacgtcaccacctaaaacactctt--tcacaaaaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccc 48098553  T
Q  100 gaaagaa 106  Q
     ||||||    
T  48098552 caaagaa 48098546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 49747844 - 49747739
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    |||||||||||||  |  |||||||||||||||||||  |||||| ||||||||| || |||||||| || ||  ||| ||||| |||||||||||||||    
T  49747844 cacccaccaaaattcatgtcaccacctaaaacagactctttcacgaaaacgaccattgtaaaaacga-atccaacaccgcccattgtcactactcacccc 49747746  T
Q  100 gaaagaa 106  Q
     ||||||    
T  49747745 taaagaa 49747739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 38636998 - 38637095
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    ||||||| |||||| |  ||||||||||||||| |||  |||||| |||| ||| ||| ||||| ||||| ||  |||||||||||||||||||||||||    
T  38636998 cacccacgaaaatacatgtcaccacctaaaacaaactccttcacgaaaacaaccgctgtaaaaatgatatcca--accacccatcgtcactactcacccc 38637095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 49528249 - 49528163
Alignment:
Q  138 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 224  Q
    |||||||| ||||||||||||| ||| ||  ||| ||||| |||||||  ||  ||||||||| | ||||||||| |||||||||||    
T  49528249 caccaaagctgaaccacatccgcaaagcttctatccgaaagatcattcatcttccaccacctcccgacctccgatccaccgaaagaa 49528163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43373871 - 43373907
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagact 37  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  43373871 cacccaccaaaataaacatcaccccctaaaactgact 43373907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 803 - 892
Alignment:
Q  5 caccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 95  Q
    |||||||||||||||||||||||||||||||||  ||||||  || || ||||| |||||||||| ||||||||| |||||||||||||||    
T  803 caccaaaataaacatcaccacctaaaacagactctttcacg-gaatgatcactggaaaacgatatccataaccactcatcgtcactactca 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 27399261 - 27399140
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacat-aaccacccatcgtcactactcacccc 99  Q
    ||||||||||||||||||||| |||||||||||| ||  ||||||  ||||||||||| ||||||||||  || |||||||||| | ||||||||| |||    
T  27399261 cacccaccaaaataaacatcatcacctaaaacaggctccttcacg-caacgaccactg-aaaacgatatctataaaccacccattgccactactcagccc 27399164  T
Q  100 gaaagaagaccgctctaaatgaaa 123  Q
     |||||| |||  |||||||||||    
T  27399163 aaaagaacacccgtctaaatgaaa 27399140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 823201 - 823450
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccg 100  Q
    ||||||||||||| ||| ||||||||||||||| |||   ||||  |||| |||||||||||||||||| ||||||||||| ||| | ||||||||||      
T  823201 cacccaccaaaattaacttcaccacctaaaacaaactccatcaca-aaacaaccactgaaaaacgatatccataaccacccttcgcctctactcacccta 823299  T
Q  101 aaag-aagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacct 199  Q
    |||| || ||| |||||| | |||  |    |||| || |||| | |||| ||||||| |||||  || ||||  ||| ||||||| |||  | ||||||    
T  823300 aaagaaacacctctctaattcaaacaccatgtccttattaccataattgagccacatctgaaaatgtcctattgaaaagatcattcagcttccgccacct 823399  T
Q  200 ctcaacctccgatacaccgaaagaacacaaaaataaccccaacaccaaact 250  Q
    ||||||||| | |  ||||||||||||| ||||||| ||||| || |||||    
T  823400 ctcaacctctggtctaccgaaagaacaccaaaataagcccaaaacaaaact 823450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 12086558 - 12086489
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatat 69  Q
    |||||||||||||||||||||||||||||||||||  |||||| | |||||| ||||| |||||||||||    
T  12086558 cacccaccaaaataaacatcaccacctaaaacagatgtattcaagaaaacgatcactgtaaaaacgatat 12086489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 37123698 - 37123601
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacc 97  Q
    |||||||||||||| |||||||||  ||||| |||||| |||||| |||||||||||| ||||||||||| ||  ||||||  | |||||||||||||    
T  37123698 cacccaccaaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccacctgttgtcactactcacc 37123601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 32010072 - 32010016
Alignment:
Q  7 ccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaa 63  Q
    |||||||||||||||||||||||||||||||  |||||| |||||||| ||||||||    
T  32010072 ccaaaataaacatcaccacctaaaacagactccttcacgaaaacgacctctgaaaaa 32010016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 14194247 - 14194152
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    |||||||||||||| || |||||||||||||||||||   ||||| || || |||||||| |||||||| |  ||||| ||||||||||||||||||||    
T  14194247 cacccaccaaaatacacgtcaccacctaaaacagactccatcacgaaatcg-ccactgaataacgatatcc--aaccatccatcgtcactactcacccc 14194152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 25594313 - 25594406
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactca 95  Q
    ||||||||| |||||||||||| |||||||||| |||  |||||  |||||||||||| ||||||||||| || |||||||||||| |||||||||    
T  25594313 cacccaccacaataaacatcactacctaaaacatactccttcac-aaaacgaccactgaaaaaacgatatcca-aaccacccatcgccactactca 25594406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 224
Target Start/End: Original strand, 39021122 - 39021267
Alignment:
Q  81 catcgtcactactcaccccgaaagaagaccgc-tctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcg-aaat 178  Q
    |||||||||||||||| || ||||||   ||| || |||||||| ||||  |||||| |||||||| | | ||||||||||||| ||||||| || |||     
T  39021122 catcgtcactactcacacccaaagaaacacgcgtcaaaatgaaactctcagtcctcaacaccaaagctaagccacatccgaaaaactcatatccgaaaag 39021221  T
Q  179 atcattccgctatcaccacctctcaacctccgatacaccgaaagaa 224  Q
    |||| || |||| ||||| ||||| ||||||||| |||| ||||||    
T  39021222 atcaatcagctaccaccatctctcgacctccgatccaccaaaagaa 39021267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 13018094 - 13018246
Alignment:
Q  4 ccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaa 103  Q
    |||||||||| ||| |||||||||||||||||||   ||||  |||| |||||| ||||| ||||| ||| | ||||||| | ||||||||||||  |||    
T  13018094 ccaccaaaattaacttcaccacctaaaacagactccatcac-aaaacaaccactaaaaaatgatatccatgatcacccattgccactactcaccctaaaa 13018192  T
Q  104 gaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatc 157  Q
    |||  ||  ||||||| |||  | |  |||||||||||| |||||| |||||||    
T  13018193 gaacgcccatctaaatcaaacaccctgtcctcatcaccatagttgagccacatc 13018246  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 14879708 - 14879648
Alignment:
Q  47 aaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaa 106  Q
    ||||||||||||||||| |||||| ||  ||||| ||||||||||| ||||||||||||||    
T  14879708 aaacgaccactgaaaaaacgatatccaacaccacacatcgtcactattcaccccgaaagaa 14879648  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 25647863 - 25647777
Alignment:
Q  138 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 224  Q
    |||||||  ||| |||| |||||||| ||||||  ||||| |||||||  || |||||||||||| ||||||||| |||| ||||||    
T  25647863 caccaaaactgagccacgtccgaaaagctcataaccgaaagatcattcaactttcaccacctctcgacctccgatccaccaaaagaa 25647777  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1652655 - 1652692
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagactt 38  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  1652655 cacccaccaaaataaacatcaccccctaaaactgactt 1652692  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 23328188 - 23328233
Alignment:
Q  74 aaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 119  Q
    |||||||||||||||||||||||||| |||||| ||| ||| ||||    
T  23328188 aaccacccatcgtcactactcacccccaaagaacaccactcaaaat 23328233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 40689521 - 40689597
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 78  Q
    ||||||| ||||||||||||||||| ||||| | | || |||||  |||||| || ||||||||||||| ||||||||    
T  40689521 cacccacaaaaataaacatcaccacttaaaaaaaatttcttcac-aaaacgatcattgaaaaacgatattcataacca 40689597  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 46358181 - 46358266
Alignment:
Q  11 aataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactca 95  Q
    ||||||||||| |||||||||||||||  |||||| |||||||   || |||||||| || ||||||||| ||||  |||||||||    
T  46358181 aataaacatcatcacctaaaacagactccttcacgaaaacgacatatgaaaaaacgaaatccataaccacgcatcaccactactca 46358266  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 28937498 - 28937574
Alignment:
Q  22 ccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacc 97  Q
    |||||||||||||||   |||||| ||  |||||||| ||||||||||| ||  ||||||||||| |||||||||||    
T  28937498 ccacctaaaacagaccccttcacgaaagtgaccactgtaaaaacgatatccaataccacccatcgccactactcacc 28937574  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 33143733 - 33143813
Alignment:
Q  19 tcaccacctaaaacagacttattcacgtaaacgaccactgaa-aaacgatatacataaccacccatcgtcactactcaccc 98  Q
    ||||||||||||||| |||  |||||| |||| ||||||||| ||||||||| ||   ||| || ||||||||||||||||    
T  33143733 tcaccacctaaaacaaactccttcacgaaaaccaccactgaacaaacgatatccaaccccatccgtcgtcactactcaccc 33143813  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 10248331 - 10248430
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    ||||| |||||||| || ||||||||||||||| |||  |||||| |||||||||||| |||||||| || |   | |||||||||||||||||||||||    
T  10248331 cacccgccaaaatacacgtcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcacccc 10248430  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 17720489 - 17720626
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccg 100  Q
    ||||||| |||| ||||||||| |||||||||| |||  |||||  ||| |||| || ||||| |||||||||||||||  ||||||||||||||||||     
T  17720489 cacccactaaaa-aaacatcactacctaaaacaaactccttcaccaaaa-gacctctaaaaaaagatatacataaccacatatcgtcactactcacccca 17720586  T
Q  101 aaagaagaccgctctaaatgaaattctcgatcctcatcac 140  Q
    |||  | ||| ||||||||||||  |||  ||||||||||    
T  17720587 aaaataaacccctctaaatgaaacactccgtcctcatcac 17720626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 12197842 - 12197945
Alignment:
Q  4 ccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaa-acgatatacataaccacccatcgtcactactcaccccgaa 102  Q
    |||| |||||| || |||||||||| |||||||   |||| | | ||||||||| |||| ||||||| ||  ||||||| ||||||||||||||||| ||    
T  12197842 ccacaaaaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaa 12197941  T
Q  103 agaa 106  Q
    ||||    
T  12197942 agaa 12197945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 12442270 - 12442373
Alignment:
Q  4 ccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaa-acgatatacataaccacccatcgtcactactcaccccgaa 102  Q
    |||| |||||| || |||||||||| |||||||   |||| | | ||||||||| |||| ||||||| ||  ||||||| ||||||||||||||||| ||    
T  12442270 ccacaaaaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaa 12442369  T
Q  103 agaa 106  Q
    ||||    
T  12442370 agaa 12442373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 17656500 - 17656606
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacg-taaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccc 98  Q
    |||||||||||||  || |||||| ||||||||||||  |||| |  |||||||||||| ||||||||||| ||  ||| | ||| ||||||||||||||    
T  17656500 cacccaccaaaattcacgtcaccatctaaaacagactccttcaagaaaaacgaccactgcaaaaacgatatccaacaccgctcattgtcactactcaccc 17656599  T
Q  99 cgaaaga 105  Q
    | |||||    
T  17656600 ccaaaga 17656606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 17656906 - 17656992
Alignment:
Q  138 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 224  Q
    |||||||||||| |||| || ||||| ||| |||  |||| ||||||| |||  |||||||| || ||||||||| |||||||||||    
T  17656906 caccaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacctatcgacctccgatccaccgaaagaa 17656992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 25184924 - 25184953
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaa 30  Q
    ||||||||||||||||||||||||||||||    
T  25184924 cacccaccaaaataaacatcaccacctaaa 25184953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30235896 - 30235932
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagact 37  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  30235896 cacccaccaaaataaacatcaccccctaaaactgact 30235932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 58439 - 58218
Alignment:
Q  7 ccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaac-gatatacataaccacccatcgtcactactcaccccgaaag- 104  Q
    ||||| || ||||||||||| ||||||||||  |||||| ||||||||| || ||||| ||||| ||  || |||| |||||||||||||| || ||||     
T  58439 ccaaagtacacatcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcgtcactactcacacccaaaga 58340  T
Q  105 --aagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctc 202  Q
      || ||  ||| |||| ||| ||||  |||  | |||||||| ||| |||||| |||||| ||| ||| ||||| || |||| |||  || || |||||    
T  58339 acaacactcctcaaaattaaactctcagtcccgaacaccaaagctgagccacattcgaaaagctcttatccgaaagataattcagcttccatcatctctc 58240  T
Q  203 aacctccgatacaccgaaagaa 224  Q
     ||||||||| |||||||||||    
T  58239 gacctccgatccaccgaaagaa 58218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 37023 - 36920
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    |||||| ||||||| || |||||||||||||||||||  |||||| |||| ||||||| |||||||| || |  ||||| ||| ||||||||||||||||    
T  37023 cacccaacaaaatacacgtcaccacctaaaacagactccttcacg-aaaccaccactgtaaaaacgacatcc--aaccatccaccgtcactactcacccc 36927  T
Q  100 gaaagaa 106  Q
     ||||||    
T  36926 caaagaa 36920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 6858 - 6828
Alignment:
Q  1 cacccaccaaaataaacatcaccacctaaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  6858 cacccaccaaaataaacatcaccacctaaaa 6828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 41915 - 42004
Alignment:
Q  9 aaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 99  Q
    |||||| |||||||||||||||||| | |  ||| || |||||||| ||  ||||||||||| ||  |||||||||||||||||||| ||||    
T  41915 aaaatacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatcca--accacccatcgtcactactcgcccc 42004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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