View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7417_low_27 (Length: 250)

Name: NF7417_low_27
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7417_low_27
NF7417_low_27
[»] chr3 (5 HSPs)
chr3 (71-246)||(26883526-26883701)
chr3 (71-207)||(8364554-8364687)
chr3 (105-204)||(14800868-14800966)
chr3 (105-180)||(15485871-15485946)
chr3 (133-182)||(21515864-21515913)
[»] chr8 (7 HSPs)
chr8 (71-207)||(28914665-28914801)
chr8 (71-207)||(8989354-8989491)
chr8 (102-182)||(17938077-17938157)
chr8 (108-175)||(22741738-22741805)
chr8 (105-182)||(24175555-24175632)
chr8 (90-139)||(24374729-24374779)
chr8 (91-182)||(17729660-17729752)
[»] chr2 (7 HSPs)
chr2 (71-207)||(27488501-27488638)
chr2 (105-207)||(18371561-18371662)
chr2 (105-207)||(18830679-18830781)
chr2 (71-207)||(27180395-27180530)
chr2 (71-207)||(27829937-27830072)
chr2 (92-175)||(17980506-17980589)
chr2 (105-178)||(21872371-21872441)
[»] chr6 (8 HSPs)
chr6 (71-207)||(26272952-26273090)
chr6 (105-175)||(14881633-14881703)
chr6 (92-207)||(22886092-22886208)
chr6 (92-173)||(17008064-17008146)
chr6 (105-175)||(22728100-22728170)
chr6 (92-207)||(22904048-22904164)
chr6 (92-151)||(25931014-25931074)
chr6 (92-145)||(24454467-24454521)
[»] chr1 (9 HSPs)
chr1 (72-161)||(17774376-17774466)
chr1 (92-175)||(18576917-18577001)
chr1 (105-175)||(25380358-25380428)
chr1 (92-172)||(17317252-17317333)
chr1 (71-175)||(30985197-30985302)
chr1 (92-175)||(23510643-23510726)
chr1 (91-207)||(14458688-14458804)
chr1 (92-151)||(17199723-17199783)
chr1 (92-175)||(13332752-13332837)
[»] chr7 (11 HSPs)
chr7 (92-175)||(23008904-23008988)
chr7 (92-182)||(11968824-11968915)
chr7 (92-182)||(11976819-11976910)
chr7 (71-207)||(21935758-21935893)
chr7 (71-207)||(28489918-28490055)
chr7 (105-207)||(9634245-9634346)
chr7 (105-207)||(7229747-7229847)
chr7 (90-175)||(12153491-12153577)
chr7 (91-172)||(30253024-30253106)
chr7 (92-176)||(12356275-12356360)
chr7 (92-175)||(9652907-9652991)
[»] chr4 (4 HSPs)
chr4 (131-203)||(3462730-3462801)
chr4 (105-207)||(13602900-13603001)
chr4 (105-207)||(12070744-12070847)
chr4 (92-175)||(13523932-13524016)
[»] scaffold0111 (1 HSPs)
scaffold0111 (105-175)||(26070-26140)
[»] chr5 (5 HSPs)
chr5 (127-179)||(23190089-23190141)
chr5 (106-151)||(23274072-23274117)
chr5 (92-175)||(20057105-20057189)
chr5 (73-143)||(20972368-20972440)
chr5 (92-175)||(29831123-29831207)
[»] scaffold0054 (1 HSPs)
scaffold0054 (92-207)||(9608-9724)
[»] scaffold0004 (1 HSPs)
scaffold0004 (138-207)||(225709-225777)
[»] scaffold0561 (1 HSPs)
scaffold0561 (127-175)||(721-769)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 71 - 246
Target Start/End: Complemental strand, 26883701 - 26883526
Alignment:
Q  71 ggaagagaagaacaccagaattttatagtagtttccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttc 170  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26883701 ggaagagaagaacaccaaaattttatagtagtttccctttcgtcctcgcttcggggtacgtctactcttcttgatagaaaacgtatctatcgaggacttc 26883602  T
Q  171 cactattgttgacaattgtttacatattgttatgattctaatcttaaaccctaagcaatcacaacaccaccaaact 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26883601 cactattgttgacaattgtttacatattgttatgattctaatcttaaaccctaagcaatcacaacaccaccaaact 26883526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 8364687 - 8364554
Alignment:
Q  71 ggaagagaagaacaccagaattttatagtagttt-ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggactt 169  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||  || ||||||||| |||||||   |||| ||||||  |||||| |||||||    
T  8364687 ggaagagaagaacacca-aattttatagtagttttccctttcgtcctcattttggagtacgtttactctt---gataaaaaacgcctctatcaaggactt 8364592  T
Q  170 ccactattgttgacaattgtttacatattgttatgatt 207  Q
    ||||||||||||| ||||||||||| ||| ||||||||    
T  8364591 ccactattgttgaaaattgtttacaaatttttatgatt 8364554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 14800966 - 14800868
Alignment:
Q  105 ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgttgacaattgtttacatattgttatg 204  Q
    |||||||||||||||||||  |||| || |||||||||||| |||||||| |||||| || |||||||||| |||||| || | |||||| |||||||||    
T  14800966 ccctttcgtcctcgcttcgaggtacctccactcttcttgattgaaaacgtctctatcaagaacttccacta-tgttgaaaaatatttacaaattgttatg 14800868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 15485871 - 15485946
Alignment:
Q  105 ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgtt 180  Q
    ||||||||||||| |||||| |||  | |||||||||||||||| ||||| |||||| |||||||| || ||||||    
T  15485871 ccctttcgtcctcacttcggggtatatatactcttcttgatagagaacgtctctatcaaggacttcaacaattgtt 15485946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 21515864 - 21515913
Alignment:
Q  133 tactcttcttgatagaaaacgtatctatcgaggacttccactattgttga 182  Q
    |||||||||||||| || || | |||||| ||||||||||||||||||||    
T  21515864 tactcttcttgatataatacatctctatcaaggacttccactattgttga 21515913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 207
Target Start/End: Original strand, 28914665 - 28914801
Alignment:
Q  71 ggaagagaagaacaccagaattttatagtagtttcccttt-cgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggactt 169  Q
    ||||||||||||||||||||||| ||| | ||| |||||| |||||| ||||||| |||| || ||  ||||||||||||||||  | |||| |||||||    
T  28914665 ggaagagaagaacaccagaattt-ataatggttccccttttcgtccttgcttcggggtacctccaccattcttgatagaaaacgcctttatcaaggactt 28914763  T
Q  170 ccactattgttgacaattgtttacatattgttatgatt 207  Q
    ||||||||||||| || |||||||| ||||||||||||    
T  28914764 ccactattgttgaaaaatgtttacaaattgttatgatt 28914801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 8989491 - 8989354
Alignment:
Q  71 ggaagagaagaacaccagaattttatagtagtt-tccctttcgtcctcgcttcggag-tacgtctactcttcttgatagaaaacgtatctatcgaggact 168  Q
    ||||||||||| |||| | |||| ||||| ||| || ||||| |||||||||||| | ||| || ||||||||||||||||||| | |||||| ||||||    
T  8989491 ggaagagaagaccaccgggattt-atagtggttctctctttcatcctcgcttcggggatacctccactcttcttgatagaaaacttctctatcaaggact 8989393  T
Q  169 tccactattgttgacaattgtttacatattgttatgatt 207  Q
    ||||||||| |||| || | |||||| ||||||||||||    
T  8989392 tccactattattgaaaaatatttacaaattgttatgatt 8989354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 17938157 - 17938077
Alignment:
Q  102 tttccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgttga 182  Q
    ||||||||||||||||||||| | |||||| |||| |||||||||||| | || |||||| ||||  ||||||||||||||    
T  17938157 tttccctttcgtcctcgcttcagggtacgtttacttttcttgatagaatatgtctctatcaaggatatccactattgttga 17938077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 22741805 - 22741738
Alignment:
Q  108 tttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccacta 175  Q
    |||||||||| ||| |||||| |||||||||||||||||||||||||  ||||| || ||||||||||    
T  22741805 tttcgtcctcactttggagtatgtctactcttcttgatagaaaacgtcgctatcaagaacttccacta 22741738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 24175555 - 24175632
Alignment:
Q  105 ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgttga 182  Q
    ||||||| || | ||||||| |||| |||| ||||||||||||||||| | |||||| | ||||||||||||||||||    
T  24175555 ccctttcatctttgcttcggggtacatctattcttcttgatagaaaacatctctatcaaagacttccactattgttga 24175632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 24374729 - 24374779
Alignment:
Q  90 attttatagtagtt-tccctttcgtcctcgcttcggagtacgtctactctt 139  Q
    |||||||||||||| |||||||||||||| |||||| ||||||||||||||    
T  24374729 attttatagtagttctccctttcgtcctcccttcggggtacgtctactctt 24374779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 17729660 - 17729752
Alignment:
Q  91 ttttatagtagtttccc-tttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgttga 182  Q
    ||||||||||||| ||| ||||||||||||||||  | |  |||||||||||||||| || | || |||||| |||| || ||||||||||||    
T  17729660 ttttatagtagttccccatttcgtcctcgcttcgaggaaaatctactcttcttgataaaatatgtctctatcaaggattttcactattgttga 17729752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 27488638 - 27488501
Alignment:
Q  71 ggaagagaagaacaccagaatttt-atagtagtt-tccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggact 168  Q
    ||||||||||||||||| |||||| | ||| ||| ||| |||||| |||||||||| |||||| |||||||| |||||||| |||| |||||| ||||||    
T  27488638 ggaagagaagaacaccataatttttacagttgttctccatttcgttctcgcttcggggtacgtttactcttcctgatagaatacgtctctatcaaggact 27488539  T
Q  169 tccactattgttgacaattgtttacatattgttatgatt 207  Q
    |||||||||||||| | ||| ||||| ||| ||||||||    
T  27488538 tccactattgttgaaatttgattaca-atttttatgatt 27488501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 207
Target Start/End: Complemental strand, 18371662 - 18371561
Alignment:
Q  105 ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgttgacaattgtttacatattgttatg 204  Q
    |||||||||||||||||||| |||| || | |||||||| ||||||| || |||||| ||||||||||||| |||||| || |||||||| |||||||||    
T  18371662 ccctttcgtcctcgcttcggggtacctccattcttcttgttagaaaatgtctctatcaaggacttccacta-tgttgaaaaatgtttacaaattgttatg 18371564  T
Q  205 att 207  Q
    |||    
T  18371563 att 18371561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 207
Target Start/End: Original strand, 18830679 - 18830781
Alignment:
Q  105 ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgttgacaattgtttacatattgttatg 204  Q
    |||||| ||||||| || || |||| || ||||||||||||||||| |||  ||||| ||||||||||||||| |||| || |||||||| | |||||||    
T  18830679 cccttttgtcctcgttttggggtacctccactcttcttgatagaaatcgttcctatcaaggacttccactattcttgaaaaatgtttacaaactgttatg 18830778  T
Q  205 att 207  Q
    |||    
T  18830779 att 18830781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 27180530 - 27180395
Alignment:
Q  71 ggaagagaagaacaccagaattttatagtagtttccc-tttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggactt 169  Q
    |||||||||| ||||| |||||| ||||| ||| ||| ||||||||||  ||||| |||| || |||||||  ||||||||||   |||||| |||||||    
T  27180530 ggaagagaagtacaccggaattt-atagtggttccccatttcgtcctcatttcgg-gtacctccactcttcacgatagaaaactcctctatcaaggactt 27180433  T
Q  170 ccactattgttgacaattgtttacatattgttatgatt 207  Q
    ||||||||||||| || | |||||| ||||||||||||    
T  27180432 ccactattgttgaaaaatatttacaaattgttatgatt 27180395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 27830072 - 27829937
Alignment:
Q  71 ggaagagaagaacaccagaattttatagtagtttccc-tttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggactt 169  Q
    |||||||||| ||||| |||||| ||||| ||| ||| ||||||||||  ||||| |||| || |||||||  ||||||||||   |||||| |||||||    
T  27830072 ggaagagaagtacaccggaattt-atagtggttccccatttcgtcctcatttcgg-gtacctccactcttcacgatagaaaactcctctatcaaggactt 27829975  T
Q  170 ccactattgttgacaattgtttacatattgttatgatt 207  Q
    ||||||||||||| || | |||||| ||||||||||||    
T  27829974 ccactattgttgaaaaatatttacaaattgttatgatt 27829937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 17980589 - 17980506
Alignment:
Q  92 tttatagtagtttccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccacta 175  Q
    |||||||||||| ||||||||||||| |||||| ||||  |||||||||||||| |||||| | || | | |||||||||||||    
T  17980589 tttatagtagttcccctttcgtcctcacttcggggtacacctactcttcttgatggaaaacctctccaccaaggacttccacta 17980506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 21872441 - 21872371
Alignment:
Q  105 ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattg 178  Q
    |||||||||||||||||||| ||||||| ||||||   ||||||||| || |||||| ||||||||||||||||    
T  21872441 ccctttcgtcctcgcttcggggtacgtccactctt---gatagaaaatgtctctatcaaggacttccactattg 21872371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 207
Target Start/End: Original strand, 26272952 - 26273090
Alignment:
Q  71 ggaagagaagaacaccagaatttt-atagtag--tttccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggac 167  Q
    ||||||||||||||||| |||||| |||||||  |||| |||||||||||||||| | ||||| || ||||||||||||||| | || | |||| ||| |    
T  26272952 ggaagagaagaacaccataatttttatagtagattttctctttcgtcctcgcttcagggtacgactgctcttcttgatagaatatgtctatatcaagggc 26273051  T
Q  168 ttccactattgttgacaattgtttacatattgttatgatt 207  Q
    ||||||||||||||| | ||| ||||| ||||||||||||    
T  26273052 ttccactattgttgaaatttgattaca-attgttatgatt 26273090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 14881703 - 14881633
Alignment:
Q  105 ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccacta 175  Q
    ||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||    
T  14881703 ccctttcatccttgtttcggagtacgtctactcttcttgatagaaaatgtatctatcaaggactttcacta 14881633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 22886208 - 22886092
Alignment:
Q  92 tttatagtagtttccc-tttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgttgacaattgtt 190  Q
    |||||||||||| ||| ||||||||||||||||   || || ||||||||||||||||||||||   ||||  | ||||  ||||||||||| |||||||    
T  22886208 tttatagtagttgcccctttcgtcctcgcttcgagatatgtttactcttcttgatagaaaacgtcgttatcatgaacttttactattgttgaaaattgtt 22886109  T
Q  191 tacatattgttatgatt 207  Q
    || | ||||||||||||    
T  22886108 tagaaattgttatgatt 22886092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 17008146 - 17008064
Alignment:
Q  92 tttatagtagtttccc-tttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccac 173  Q
    ||||| |||||||||| |||| || |||||| || |||||||||||||| ||||||||| | || |||||| |||||||||||    
T  17008146 tttattgtagtttcccctttcatcatcgctttggggtacgtctactctttttgatagaatatgtctctatcaaggacttccac 17008064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 22728100 - 22728170
Alignment:
Q  105 ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccacta 175  Q
    ||||||| || ||||||||| |||| ||||||||||||||||||||| || |||||| | ||||| |||||    
T  22728100 ccctttcctcttcgcttcggggtacatctactcttcttgatagaaaaggtctctatcaaagactttcacta 22728170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 22904164 - 22904048
Alignment:
Q  92 tttatagtagtttccc-tttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgttgacaattgtt 190  Q
    |||||||||||| ||| ||||||||||||||||   || || |||| |||||||||||||||||   ||||  | ||||  ||||||||||| |||||||    
T  22904164 tttatagtagttgcccctttcgtcctcgcttcgagatatgtttacttttcttgatagaaaacgtcgttatcatgaacttttactattgttgaaaattgtt 22904065  T
Q  191 tacatattgttatgatt 207  Q
    || | ||||||| ||||    
T  22904064 tagaaattgttaggatt 22904048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 25931074 - 25931014
Alignment:
Q  92 tttatagtagttt-ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaa 151  Q
    ||||||||||||  |||||||||||| |||||||  ||||||||||||||||||| |||||    
T  25931074 tttatagtagttcgccctttcgtccttgcttcggcctacgtctactcttcttgatggaaaa 25931014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 24454467 - 24454521
Alignment:
Q  92 tttatagtagttt-ccctttcgtcctcgcttcggagtacgtctactcttcttgat 145  Q
    ||||||||||||  |||||||||| |||||||||  |||||||||||||||||||    
T  24454467 tttatagtagttcaccctttcgtcttcgcttcgggctacgtctactcttcttgat 24454521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 17774466 - 17774376
Alignment:
Q  72 gaagagaagaacaccagaattttatagtagtttcc-ctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatc 161  Q
    |||||||| ||||||| ||||||||| |||||||| |||||||||||||||||| | ||||||||||||| |||||||| |||| ||||||    
T  17774466 gaagagaacaacaccataattttataatagtttcctctttcgtcctcgcttcggggcacgtctactcttcgtgatagaatacgtctctatc 17774376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 18576917 - 18577001
Alignment:
Q  92 tttatagtagtttccc-tttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccacta 175  Q
    |||||||||||| ||| |||||||||||  |||| |||||||||||||||||| |||||||||| ||||   |||||||||||||    
T  18576917 tttatagtagttccccctttcgtcctcgtatcggggtacgtctactcttcttggtagaaaacgtctctacaaaggacttccacta 18577001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 25380428 - 25380358
Alignment:
Q  105 ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccacta 175  Q
    ||||||||||||||||||||  ||| ||||||||||||| | |||||| | || |||||||||||||||||    
T  25380428 ccctttcgtcctcgcttcgggctacatctactcttcttggtggaaaacatctccatcgaggacttccacta 25380358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 17317252 - 17317333
Alignment:
Q  92 tttatagtagttt-ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttcca 172  Q
    ||||||||||||  ||||||||||||||||||||  |||||| |||||||||||| |||||||| || | | ||||||||||    
T  17317252 tttatagtagttcgccctttcgtcctcgcttcgggctacgtcaactcttcttgatggaaaacgtctccaccaaggacttcca 17317333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 30985197 - 30985302
Alignment:
Q  71 ggaagagaagaacaccagaattttatagtagtttc-cctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggactt 169  Q
    |||||||||||||||   ||||||||||||||| | ||||||||| ||||||  | ||||  |||| ||||||||||| |||||| |||||| |||| ||    
T  30985197 ggaagagaagaacactgaaattttatagtagttcctcctttcgtcttcgctttagggtacaactacacttcttgatagtaaacgtctctatcaaggaatt 30985296  T
Q  170 ccacta 175  Q
    ||||||    
T  30985297 ccacta 30985302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 23510643 - 23510726
Alignment:
Q  92 tttatagtagtttccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccacta 175  Q
    |||||||||||| ||| || || |||||||||| |||||| |||| |||||||| |||||||| || | | |||||||||||||    
T  23510643 tttatagtagttccccctttgttctcgcttcggggtacgtttacttttcttgatggaaaacgtctccaccaaggacttccacta 23510726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 207
Target Start/End: Original strand, 14458688 - 14458804
Alignment:
Q  91 ttttatagtagtttcccttt-cgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgttgacaattgt 189  Q
    |||||||||||||| ||||| | || | ||||| | |||||| |||  |||||||||||| | || |||||| |||| ||||||||||||||| | |||     
T  14458688 ttttatagtagttttccttttcatcatagcttcagggtacgtatacctttcttgatagaatatgtctctatcaaggatttccactattgttgaaatttga 14458787  T
Q  190 ttacatattgttatgatt 207  Q
    ||||| ||||||||||||    
T  14458788 ttaca-attgttatgatt 14458804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 17199723 - 17199783
Alignment:
Q  92 tttatagtagttt-ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaa 151  Q
    ||||||||||||  ||||||||||||||||||||  ||| ||||||||||||||| |||||    
T  17199723 tttatagtagttcaccctttcgtcctcgcttcgggctacatctactcttcttgatggaaaa 17199783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 13332752 - 13332837
Alignment:
Q  92 tttatagtagttt-ccctttcgtcctcgcttcggagtacgtctactcttcttgat-agaaaacgtatctatcgaggacttccacta 175  Q
    ||||||||||||| ||||||| |||| ||||||| |||||||| ||||||||| | | ||||||| ||||   |||||||||||||    
T  13332752 tttatagtagtttcccctttcatccttgcttcggggtacgtctcctcttcttgttaaaaaaacgtctctactaaggacttccacta 13332837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 23008988 - 23008904
Alignment:
Q  92 tttatagtagtttccc-tttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccacta 175  Q
    |||||||||||||||| |||| ||||||| |||| |||||| |||||||||||||||||||||| |||| | |||||||||||||    
T  23008988 tttatagtagtttcccctttcatcctcgcctcggggtacgtttactcttcttgatagaaaacgtctctaccaaggacttccacta 23008904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 11968915 - 11968824
Alignment:
Q  92 tttatagtagtttcccttt-cgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgttga 182  Q
    |||||||||||| || ||| | |||||||||||  |||||||||||||||||| |||||||||| |||||| || |||||||||||||||||    
T  11968915 tttatagtagttccctttttcatcctcgcttcgaggtacgtctactcttcttggtagaaaacgtctctatcaagaacttccactattgttga 11968824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 11976910 - 11976819
Alignment:
Q  92 tttatagtagtttcccttt-cgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgttga 182  Q
    ||||||||||||| | ||| |||||||||||||  ||||||||||||||||||||||||||| | | |||| || |||||||||||||||||    
T  11976910 tttatagtagttttctttttcgtcctcgcttcgaggtacgtctactcttcttgatagaaaacatctttatcaagaacttccactattgttga 11976819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 207
Target Start/End: Original strand, 21935758 - 21935893
Alignment:
Q  71 ggaagagaagaacaccagaattttatagtagtttccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttc 170  Q
    |||||||||||||| | |||||| ||| | ||| |||||||||| | | ||| | |||| | |||||||||||||||||||| | | |||| |||||||     
T  21935758 ggaagagaagaacatcggaattt-ataatggttcccctttcgtcattgtttcagggtacctttactcttcttgatagaaaacatctttatcaaggactta 21935856  T
Q  171 cactattgttgacaattgtttacatattgttatgatt 207  Q
    |||||||||||| || |||||||| ||| ||||||||    
T  21935857 cactattgttgaaaaatgtttacaaatttttatgatt 21935893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 28490055 - 28489918
Alignment:
Q  71 ggaagagaagaacaccagaat-tttatagtagtttcc-ctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggact 168  Q
    ||||||||||||||||| ||  |||||||||||| || ||||| | |||| |||   ||||||||||  |||||||||||| || | |||||| ||||||    
T  28490055 ggaagagaagaacaccaaaaaatttatagtagttccctctttcatactcgtttcaaggtacgtctacatttcttgatagaatacatctctatcaaggact 28489956  T
Q  169 tccactattgttgacaattgtttacatattgttatgatt 207  Q
    || | ||||||||| ||||||||||| ||||||||||||    
T  28489955 tc-attattgttgagaattgtttacaaattgttatgatt 28489918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 207
Target Start/End: Complemental strand, 9634346 - 9634245
Alignment:
Q  105 ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgttgacaattgtttacatattgttatg 204  Q
    |||||||| ||||||||| |  ||| || ||||||||||||||||||| | | |||| ||||||||||||| |||||| || |||||||| ||||||| |    
T  9634346 ccctttcgccctcgcttcaggatacctccactcttcttgatagaaaacatctttatcaaggacttccacta-tgttgaaaaatgtttacaaattgttaag 9634248  T
Q  205 att 207  Q
    |||    
T  9634247 att 9634245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 207
Target Start/End: Original strand, 7229747 - 7229847
Alignment:
Q  105 ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgttgacaattgtttacatattgttatg 204  Q
    |||||| || |||||||||| |||| ||  ||||||||||||||| |  | |||||| ||||||||||||| |||||| || |||||||| |||||||||    
T  7229747 cccttttgttctcgcttcggggtac-tcccctcttcttgatagaatatctctctatcaaggacttccacta-tgttgaaaaatgtttacaaattgttatg 7229844  T
Q  205 att 207  Q
    |||    
T  7229845 att 7229847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 12153491 - 12153577
Alignment:
Q  90 attttatagtagttt-ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccacta 175  Q
    ||||||||||||||  ||||||| ||||||||||||  |||||||||||| |||||| |||||||| || | | |||| ||||||||    
T  12153491 attttatagtagttcaccctttcttcctcgcttcgggctacgtctactctccttgatggaaaacgtctccaccaaggaattccacta 12153577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 30253024 - 30253106
Alignment:
Q  91 ttttatagtagttt-ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttcca 172  Q
    |||||||||||||  |||||||||| |||||||||  ||| ||||||||||||| |  |||||||||| | | ||||||||||    
T  30253024 ttttatagtagttcgccctttcgtcatcgcttcgggttacatctactcttcttggtgaaaaacgtatccaccaaggacttcca 30253106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 12356360 - 12356275
Alignment:
Q  92 tttatagtagtttcc-ctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactat 176  Q
    ||||||||||||| | |||||||| ||||||| |  ||||| |||||||||||||  ||||||| || | | ||||||||||||||    
T  12356360 tttatagtagtttgctctttcgtcgtcgcttcaggctacgtttactcttcttgatgaaaaacgtctccaccaaggacttccactat 12356275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 9652907 - 9652991
Alignment:
Q  92 tttatagtagttt-ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccacta 175  Q
    ||||||||||||  |||||||||| | |||| ||  ||||||||||||||||||| |||||||  || | | |||||||||||||    
T  9652907 tttatagtagttcaccctttcgtcattgctttgggctacgtctactcttcttgatggaaaacgcctccaccaaggacttccacta 9652991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 3462730 - 3462801
Alignment:
Q  131 tctactcttcttgatagaaaacgtatctatcgaggacttccactattgttgacaattgtttacatattgttat 203  Q
    ||||||||||||||||||||| || |||||| ||||||||||||| |||||| || |||||||| ||||||||    
T  3462730 tctactcttcttgatagaaaatgtctctatcaaggacttccacta-tgttgaaaaatgtttacaaattgttat 3462801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 207
Target Start/End: Original strand, 13602900 - 13603001
Alignment:
Q  105 ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgttgacaattgtttacatattgttatg 204  Q
    |||||||| ||||||||| |  ||| || ||||||||||||||||||| | | |||| ||||||||||||| |||||| || |||||||| ||||||| |    
T  13602900 ccctttcgccctcgcttcaggatacctccactcttcttgatagaaaacatctttatcaaggacttccacta-tgttgaaaaatgtttacaaattgttaag 13602998  T
Q  205 att 207  Q
    |||    
T  13602999 att 13603001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 207
Target Start/End: Complemental strand, 12070847 - 12070744
Alignment:
Q  105 ccctttcgtcctcgcttcggagtacgtct-actcttcttgatagaaaacgtatctatcgaggacttccactattgttgacaattgtttacatattgttat 203  Q
    |||||||||||||||||||  |||| ||  | ||||||||||||||||||| | |||| |||| |||| |||||||||| || |||  ||| ||| ||||    
T  12070847 ccctttcgtcctcgcttcgaggtacctcccagtcttcttgatagaaaacgtttttatcaaggatttccgctattgttgaaaaatgtgaacaaattattat 12070748  T
Q  204 gatt 207  Q
    ||||    
T  12070747 gatt 12070744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 13523932 - 13524016
Alignment:
Q  92 tttatagtagttt-ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccacta 175  Q
    ||||||||||||  |||||||||| | |||| ||  ||||||||||||||||||| |||||||  || | | |||||||||||||    
T  13523932 tttatagtagttcaccctttcgtcattgctttgggctacgtctactcttcttgatggaaaacgcctccaccaaggacttccacta 13524016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 26070 - 26140
Alignment:
Q  105 ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccacta 175  Q
    ||||||||||||||||||||  ||||||||||||||||||| ||||| || || | | |||||||||||||    
T  26070 ccctttcgtcctcgcttcgggctacgtctactcttcttgatggaaaatgtctccaccaaggacttccacta 26140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 23190089 - 23190141
Alignment:
Q  127 tacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgt 179  Q
    |||||||||||||||||||||||||||| |||||  || ||||||||||||||    
T  23190089 tacgtctactcttcttgatagaaaacgtctctattaagaacttccactattgt 23190141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 23274072 - 23274117
Alignment:
Q  106 cctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaa 151  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||    
T  23274072 cctttcgtcctcgcttcgggctacgtctactcttcttgatggaaaa 23274117  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 20057105 - 20057189
Alignment:
Q  92 tttatagtagtt-tccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccacta 175  Q
    |||||||| ||| |||||||| |||| ||||| |  ||| || ||||||||||||||| ||||| ||||||  ||||||||||||    
T  20057105 tttatagtggttctccctttcatccttgcttcaggatacctccactcttcttgatagagaacgtctctatcatggacttccacta 20057189  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 20972440 - 20972368
Alignment:
Q  73 aagagaagaacacc-agaattttatagtagttt-ccctttcgtcctcgcttcggagtacgtctactcttcttg 143  Q
    ||||||| |||||| ||| |||||||||||||  |||||| ||||||||||| |  |||||||||||||||||    
T  20972440 aagagaacaacaccgagatttttatagtagttcacccttttgtcctcgcttcaggctacgtctactcttcttg 20972368  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 29831123 - 29831207
Alignment:
Q  92 tttatagtagttt-ccctttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccacta 175  Q
    ||||||||||||  ||||||| ||||||||||||  |||||| |||||||||||| || || || || | | |||||||||||||    
T  29831123 tttatagtagttcaccctttcttcctcgcttcggtctacgtccactcttcttgatggagaatgtctccaccaaggacttccacta 29831207  T

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Target: scaffold0054 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 9724 - 9608
Alignment:
Q  92 tttatagtagtttccc-tttcgtcctcgcttcggagtacgtctactcttcttgatagaaaacgtatctatcgaggacttccactattgttgacaattgtt 190  Q
    |||||||||||| ||| ||||||||||||||||   || || |||| |||||||||||||||||   ||||  | ||||  ||||||||||| |||||||    
T  9724 tttatagtagttgcccctttcgtcctcgcttcgagatatgtttactattcttgatagaaaacgtcgttatcatgaacttttactattgttgaaaattgtt 9625  T
Q  191 tacatattgttatgatt 207  Q
    || | ||||||| ||||    
T  9624 tagaaattgttaagatt 9608  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 225777 - 225709
Alignment:
Q  138 ttcttgatagaaaacgtatctatcgaggacttccactattgttgacaattgtttacatattgttatgatt 207  Q
    ||||||||||||||||| |||||| ||||||| ||||| |||||| || ||||  || ||||||||||||    
T  225777 ttcttgatagaaaacgtctctatcaaggactttcacta-tgttgaaaaatgttagcaaattgttatgatt 225709  T

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Target: scaffold0561 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 769 - 721
Alignment:
Q  127 tacgtctactcttcttgatagaaaacgtatctatcgaggacttccacta 175  Q
    ||||||||||||||||||| ||||||| ||| | | |||||||||||||    
T  769 tacgtctactcttcttgatggaaaacgcatccaccaaggacttccacta 721  T

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