View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7417_low_3 (Length: 536)
Name: NF7417_low_3
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7417_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 14 - 518
Target Start/End: Complemental strand, 1180798 - 1180306
Alignment:
| Q |
14 |
tttggtggtgatggagtagttgagtttgtctctgaaggagctgatggagtagttgatggtgtggttgatggagactttgttggtnnnnnnntgccacttg |
113 |
Q |
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| T |
1180798 |
tttggtggtgatggagtagttgaatttgtctctgaaggagctgatggagtagttgatgg------------agattttgttggtgggggggtgccacttg |
1180711 |
T |
|
| Q |
114 |
gagttggggtggtgctagcagcaacaacatttacttcaagcttcatgcctccggtgctagtacaatgacctggagtagggcatatgaagtaaattttgcc |
213 |
Q |
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| T |
1180710 |
gagttggggtggtgctagcagcaacaacattgacttcaagcttcatgccaccagtactagtacaatgacctggagtggggcatatgaagtaaatttttcc |
1180611 |
T |
|
| Q |
214 |
tgttttagtcaatgcaaccttagaatctccatcatcatagctctttatggtgttgcttgtactgcagcttttgtagccactttcatcaacttcattcact |
313 |
Q |
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| T |
1180610 |
tgctttagtcaatggaaccttagaatctccatcatcatagctctttatggtgttgcttgtactgcagcttttgtagccactttcatcaacttcattcact |
1180511 |
T |
|
| Q |
314 |
tggtggaatgagccgtatttgaacactggtttttcaacacacnnnnnnnnttgttagctctataatgtagattacaaaatacttttacattatttctata |
413 |
Q |
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| T |
1180510 |
tggtggaatgagccatatttgaacactggtttttcaacacacaaaaaaaattgttagctctataatgtagattacaaaatacttttacattatttctata |
1180411 |
T |
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| Q |
414 |
tatatttaagatttcattatgtggataattaaccaaaggatgcaagttcatacctaagttatcaccaactttgaaagtttttccagaagcccatttggtg |
513 |
Q |
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| T |
1180410 |
tatatttaagatttcattatgtggataattaaccaaaggatgcaagttcatacctaagttatcaccaactttgaaagtttttccagaagcccatttggtg |
1180311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 56 - 413
Target Start/End: Complemental strand, 1187906 - 1187551
Alignment:
| Q |
56 |
gatggagtagttgatggtgtggttgatggagactttgttggtnnnnnnntgccacttggagttggggtggtgctagcagcaacaacatttacttcaagct |
155 |
Q |
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| T |
1187906 |
gatggagtagttgatggtgtggttgatggagattttgttggtgggggggtgccacttggagttggggtggtgctagcagcaacaacatttacttcaagct |
1187807 |
T |
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| Q |
156 |
tcatgcctccggtgctagtacaatgacctggagtagggcatatgaagtaaattttgcctgttttagtcaatgcaaccttagaatctccatcatcatagct |
255 |
Q |
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| T |
1187806 |
tcatgccaccagtactagtacaatgacctagagtagggcatatgaagtaaatttttcctgctttagtcaatggaaccttagaatttccaccagcatagtt |
1187707 |
T |
|
| Q |
256 |
ctttatggtgttgcttgtactgcagcttttgtagccactttcatcaacttcattcacttggtggaatgagccgtatttgaacactggtttttcaacacac |
355 |
Q |
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| T |
1187706 |
ctttatggcattgcttgaagtgcagcttttgtagtcactttcatcaacttcatccacttggtgggaggagccatatttgaacactgttttttcaagatac |
1187607 |
T |
|
| Q |
356 |
nnnnnnnnttgttagctctataatgtagattacaaaatacttttacattatttctata |
413 |
Q |
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|||||| ||| ||||||||||| |||||||| |||| |||||||||||| |
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| T |
1187606 |
aaaataatttgttaactc--taatgtagattgcaaaatacatttatattatttctata |
1187551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 462 - 518
Target Start/End: Complemental strand, 1187378 - 1187322
Alignment:
| Q |
462 |
catacctaagttatcaccaactttgaaagtttttccagaagcccatttggtgtaatc |
518 |
Q |
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| T |
1187378 |
catacctaagttatcaccaactttgaaagtttttccagaagcccatttggtgtaatc |
1187322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 1187972 - 1187900
Alignment:
| Q |
14 |
tttggtggtgatggagtagttgagtttgtctctgaaggagctgatggagtagttgatggtgtggttgatggag |
86 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || || ||||||| |
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| T |
1187972 |
tttggtggtgatggagtagttgagtttgtctctgaaggagctgatggtgtggttgatggagtagtggatggag |
1187900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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