View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7417_low_34 (Length: 230)
Name: NF7417_low_34
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7417_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 29594573 - 29594462
Alignment:
| Q |
1 |
attttagttttgtttgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttcacgccaaattactggagaat |
100 |
Q |
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| T |
29594573 |
attttagttttgtttgtgttcattgggatttttatcattagaagctcttgcaaaacttatacacatatcagataaccttcacgccaaattactggagaat |
29594474 |
T |
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| Q |
101 |
gacaagaagaat |
112 |
Q |
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| T |
29594473 |
ggcaagaagaat |
29594462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 52077466 - 52077355
Alignment:
| Q |
1 |
attttagttttgtttgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttcacgccaaattactggagaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
52077466 |
attttagttttgtttgtgttcattgggatttttatcattagaagctcttgcaaaacttatacccatatcagataaccttcacgccaaattagtggagaat |
52077367 |
T |
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| Q |
101 |
gacaagaagaat |
112 |
Q |
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| T |
52077366 |
ggcaagaagaat |
52077355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 29058805 - 29058916
Alignment:
| Q |
1 |
attttagttttgtttgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttcacgccaaattactggagaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
29058805 |
attttagttttgtttgtgttcattgggatttttatcattagaagctcttgcaaaacttatacccatatcagataaccttcacttcaaattactggagaat |
29058904 |
T |
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| Q |
101 |
gacaagaagaat |
112 |
Q |
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| T |
29058905 |
ggcaagaagaat |
29058916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 29059084 - 29059168
Alignment:
| Q |
109 |
gaataaattaaatgatatatctatgattgtaacatcaactttcccatcataaaaaacaacccttctttcccatgctaaacttcac |
193 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| || ||||| |||||||||||||| |
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| T |
29059084 |
gaataaattaaatgatatatctatggttgtaacatcaactttcccataatagaaaacaacgctcctttcatatgctaaacttcac |
29059168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 52077187 - 52077102
Alignment:
| Q |
109 |
gaataaattaaatgatatatctatgattgtaacatcaactttcccatcataaaaaacaacccttctttcccatgctaaacttcacc |
194 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| || |||||||||| |||||| |||| |
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| T |
52077187 |
gaataaattaaatgatatatctatggttgtaacatcaactttcccatcatgggaaataactctcctttcccatgttaaactccacc |
52077102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 51288713 - 51288793
Alignment:
| Q |
1 |
attttagttttgtttgtgttcattgggattttt-atcatcagaagctcttgcaaaacttatacacatatcagataaccttc |
80 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| || ||||||||||||| |||||| ||||||||||||||||| |
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| T |
51288713 |
attttagttttgtttgtgttcagtgggattttttatcattaggagctcttgcaaaatttatacccatatcagataaccttc |
51288793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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