View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7417_low_4 (Length: 483)
Name: NF7417_low_4
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7417_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 14 - 464
Target Start/End: Original strand, 28161516 - 28161966
Alignment:
| Q |
14 |
tggacatcatgtcttaaaattgcagaagatctagcaacaggccttctctatatccaccaaaaccccggcatggctcacggaaatctgaaatcttccaatg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28161516 |
tggacatcatgtcttaaaattgcagaagatctagcaacaggccttctctatatccaccaaaaccccggcatggctcatggaaatctgaaatcttccaatg |
28161615 |
T |
|
| Q |
114 |
tgttacttggtgccgactttgagtcctgtctcactgattatggtctcactgtgttccttaatcccgacacaatggaggaaccaagtgccacttctttttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28161616 |
tgttacttggtgccgactttgagtcctgtctcactgattatggtctcactgtgttccttaatcccgacacaatggaggaaccaagtgccacttctttttt |
28161715 |
T |
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| Q |
214 |
ctatagagcacccgagtgccgcagttttcaacggccacaaactcaacctgccgatgtatacagctttggtgtccttctcctcgagcttttgactggaaaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28161716 |
ctatagagcacccgagtgccgcagttttcaacggccacaaactcaacctgccgatgtatacagctttggtgtccttctcctcgagcttttgactggcaaa |
28161815 |
T |
|
| Q |
314 |
acaccctaccaagaccttgttcaggcacatggttcagatatacctagatgggttcggtcggtacgtgaagaagagaccgagtctggggatgatcctgcgt |
413 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28161816 |
acaccctaccaagaccttgttcaggcacatggttcggatatacctagatgggttcggtcggtacgtgaagaagagaccgagtctggggatgatcctgcct |
28161915 |
T |
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| Q |
414 |
catcaggcaatgaagcttctgaagagaagcttcaggctctattgaacattg |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28161916 |
catcaggcaatgaagcttctgaagagaagcttcaggctctattgaacattg |
28161966 |
T |
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