View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7417_low_6 (Length: 456)

Name: NF7417_low_6
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7417_low_6
NF7417_low_6
[»] chr6 (9 HSPs)
chr6 (319-441)||(15558785-15558912)
chr6 (1-111)||(15558522-15558632)
chr6 (1-111)||(15827438-15827548)
chr6 (199-295)||(15828193-15828288)
chr6 (157-207)||(15558678-15558728)
chr6 (348-398)||(7281162-7281212)
chr6 (348-398)||(14910407-14910457)
chr6 (350-427)||(2999492-2999569)
chr6 (348-428)||(12261971-12262051)
[»] chr8 (6 HSPs)
chr8 (157-295)||(24527777-24527913)
chr8 (159-295)||(19741985-19742121)
chr8 (41-105)||(24527978-24528041)
chr8 (356-427)||(25721471-25721542)
chr8 (248-293)||(17274742-17274787)
chr8 (349-398)||(24909862-24909911)
[»] chr3 (8 HSPs)
chr3 (166-295)||(8446761-8446888)
chr3 (1-111)||(26421234-26421344)
chr3 (210-294)||(2899923-2900007)
chr3 (348-424)||(20106035-20106110)
chr3 (210-293)||(51661675-51661757)
chr3 (1-66)||(8446976-8447041)
chr3 (348-397)||(27532326-27532375)
chr3 (346-427)||(35845490-35845571)
[»] chr4 (9 HSPs)
chr4 (165-291)||(16913373-16913498)
chr4 (210-294)||(44453080-44453164)
chr4 (210-294)||(13336944-13337028)
chr4 (211-295)||(41068852-41068936)
chr4 (348-398)||(25051391-25051441)
chr4 (348-398)||(37996659-37996709)
chr4 (210-286)||(33040582-33040657)
chr4 (27-103)||(44453265-44453341)
chr4 (210-290)||(44673679-44673758)
[»] scaffold0356 (2 HSPs)
scaffold0356 (157-295)||(13670-13804)
scaffold0356 (1-83)||(13507-13589)
[»] chr7 (12 HSPs)
chr7 (210-294)||(4407409-4407493)
chr7 (348-398)||(24719035-24719085)
chr7 (210-294)||(28937342-28937427)
chr7 (348-404)||(23137363-23137419)
chr7 (210-294)||(4463430-4463514)
chr7 (211-294)||(3997160-3997243)
chr7 (348-398)||(2739803-2739853)
chr7 (349-423)||(35144409-35144483)
chr7 (348-429)||(1502249-1502330)
chr7 (210-294)||(15468255-15468339)
chr7 (348-428)||(24865173-24865253)
chr7 (348-416)||(25480456-25480524)
[»] chr1 (7 HSPs)
chr1 (210-294)||(3833426-3833510)
chr1 (245-293)||(24961877-24961925)
chr1 (210-294)||(31893108-31893191)
chr1 (247-293)||(907660-907706)
chr1 (348-398)||(50798838-50798888)
chr1 (210-294)||(8681344-8681428)
chr1 (27-111)||(8681520-8681604)
[»] chr2 (11 HSPs)
chr2 (210-292)||(28948865-28948947)
chr2 (6-83)||(24361002-24361079)
chr2 (350-427)||(24450626-24450703)
chr2 (348-397)||(45002691-45002740)
chr2 (211-294)||(24360865-24360948)
chr2 (210-271)||(32234449-32234510)
chr2 (353-415)||(38401756-38401818)
chr2 (352-398)||(41374313-41374359)
chr2 (225-294)||(14639966-14640035)
chr2 (210-294)||(30418972-30419056)
chr2 (348-392)||(30930060-30930104)
[»] chr5 (9 HSPs)
chr5 (211-291)||(25247612-25247692)
chr5 (211-291)||(25311396-25311476)
chr5 (18-111)||(25247801-25247894)
chr5 (18-111)||(25311585-25311678)
chr5 (211-291)||(30413766-30413846)
chr5 (343-426)||(17762126-17762209)
chr5 (348-398)||(24652562-24652612)
chr5 (346-382)||(3420053-3420089)
chr5 (344-424)||(41405404-41405483)
[»] scaffold1609 (1 HSPs)
scaffold1609 (348-429)||(443-524)
[»] scaffold0007 (1 HSPs)
scaffold0007 (245-293)||(173897-173945)


Alignment Details
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 319 - 441
Target Start/End: Original strand, 15558785 - 15558912
Alignment:
Q  319 ataaagtgataaaatatttatataaacactaa-----tgttgatattttaaaaacagtcataaattttctaaattttatcatatctattttttgatatcg 413  Q
    ||||||||| ||||||||||||||||||||||     |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  15558785 ataaagtgaaaaaatatttatataaacactaaattaatgttgatattttaaaaacagtcatgaattttctaaattttatcatatctatcttttgatatcg 15558884  T
Q  414 gtatataaaaatttgccttcctagatat 441  Q
    |||||||||||||||||||| |||||||    
T  15558885 gtatataaaaatttgccttcgtagatat 15558912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 15558522 - 15558632
Alignment:
Q  1 tatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattataga 100  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15558522 tatgggtcatgagattcaaggttctatatggttagaaactcttctagacaagttgcatatggatttctaccgcgacagaattgatcttcccaattataga 15558621  T
Q  101 tttccgtagtc 111  Q
    ||||| |||||    
T  15558622 tttccttagtc 15558632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 15827438 - 15827548
Alignment:
Q  1 tatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattataga 100  Q
    ||||||||||  |||| |||||| |||||||||||||| ||||| ||||||||| ||||||||||| |||||||| ||||||| |||||  |||||||||    
T  15827438 tatgggtcataggattcaaggttgtatttggttagaaattcttccagccgagttacatatggatttctaccgcgatagaattggtcttcttaattataga 15827537  T
Q  101 tttccgtagtc 111  Q
    ||||| |||||    
T  15827538 tttccttagtc 15827548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 295
Target Start/End: Original strand, 15828193 - 15828288
Alignment:
Q  199 tttttattgagttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtctc 295  Q
    |||||||||  ||||||||||||||||||| |  || || |||| || ||||||||| | ||||| ||||||| |||||||||||||||||||||||    
T  15828193 tttttattggattttagagtttgacaggcacatgactgacgctt-cctgggtgccaacctagttgggatgtcggtgttgtctcctgatgtctgtctc 15828288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 15558678 - 15558728
Alignment:
Q  157 gcctagtcccccctctctctttgtacagacttttttccccactttttattg 207  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||||||||||    
T  15558678 gcctagtcccccctctctctttgtacatactttttcccctactttttattg 15558728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 7281212 - 7281162
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatatc 398  Q
    ||||||| |||||||||||| |||||  | |||||||||||||||||||||    
T  7281212 taatgtttatattttaaaaatagtcacgagttttctaaattttatcatatc 7281162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 14910457 - 14910407
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatatc 398  Q
    ||||||||||| |||||||| |||||| | ||||| |||||||||||||||    
T  14910457 taatgttgataatttaaaaatagtcatgagttttcaaaattttatcatatc 14910407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 2999492 - 2999569
Alignment:
Q  350 atgttgatattttaaaaacagtcataaattttctaaattttatcatatctattttttgatatcggtatataaaaattt 427  Q
    ||||||||||||| |||| |||||| | ||||  |||||||||||||||| |||| | ||||  ||| ||||||||||    
T  2999492 atgttgatattttgaaaatagtcatgactttttaaaattttatcatatctgttttctcatatatgtacataaaaattt 2999569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 428
Target Start/End: Original strand, 12261971 - 12262051
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatatctattttttgatatcggtatataaaaatttg 428  Q
    ||||||||||||||| |||| |||||| | ||||| ||||| ||||||||  | ||| | ||||  |||||||||||||||    
T  12261971 taatgttgatattttgaaaatagtcattagttttcaaaattctatcatattgactttctcatatatgtatataaaaatttg 12262051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 157 - 295
Target Start/End: Complemental strand, 24527913 - 24527777
Alignment:
Q  157 gcctagtcccccctctctctttgtacagacttttttccccactttttattgagttttagagtttgacaggcatagaacggaggctttccggggtgccaat 256  Q
    |||||||| |||||||||||  ||||||||||||| ||||  |||||||||| |||||||||||||||||||||| | |||||||| |||||||| ||||    
T  24527913 gcctagtctcccctctctct--gtacagactttttccccctttttttattgaattttagagtttgacaggcataggatggaggcttcccggggtgtcaat 24527816  T
Q  257 caagttgagatgtcgatgttgtctcctgatgtctgtctc 295  Q
    | | ||| ||||||| ||||||| |||||||||| ||||    
T  24527815 ctaattgggatgtcggtgttgtcccctgatgtctttctc 24527777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 295
Target Start/End: Original strand, 19741985 - 19742121
Alignment:
Q  159 ctagtcccccctctctctttgtacagacttttttccccacttttt-attgagttttagagtttgacaggcatagaacggaggctttccggggtgccaatc 257  Q
    ||||||||| |||| |||||||||||||||||| |||   ||||| | ||| ||| |||| ||| |||||| || | |||||||| |||||||||||| |    
T  19741985 ctagtcccctctctttctttgtacagactttttcccctgtttttttaatgaattt-agagattggcaggcacaggatggaggcttcccggggtgccaacc 19742083  T
Q  258 aagttgagatgtcgatgttgtctcctgatgtctgtctc 295  Q
     ||||| ||||||| |||||||||||||||||||||||    
T  19742084 tagttgggatgtcggtgttgtctcctgatgtctgtctc 19742121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 24528041 - 24527978
Alignment:
Q  41 cttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattatagatttcc 105  Q
    |||| ||||||||||||||||||||||||||| |||| |||||||||||||  | ||||||||||    
T  24528041 cttccagccgagttgcatatggatttttaccg-gacataattgatcttccctttgatagatttcc 24527978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 427
Target Start/End: Original strand, 25721471 - 25721542
Alignment:
Q  356 atattttaaaaacagtcataaattttctaaattttatcatatctattttttgatatcggtatataaaaattt 427  Q
    |||||||||||| |||||||  ||||| ||||||||||||||| | ||| | ||||||||  ||||||||||    
T  25721471 atattttaaaaatagtcataggttttcaaaattttatcatatcgaatttctcatatcggtgcataaaaattt 25721542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 17274742 - 17274787
Alignment:
Q  248 ggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtc 293  Q
    |||||||| ||||||| ||||||||||||| ||| |||||||||||    
T  17274742 ggtgccaaccaagttgggatgtcgatgttgcctcttgatgtctgtc 17274787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 24909911 - 24909862
Alignment:
Q  349 aatgttgatattttaaaaacagtcataaattttctaaattttatcatatc 398  Q
    ||||||||||||||||||| |||||||| ||||  | |||||||||||||    
T  24909911 aatgttgatattttaaaaatagtcataagtttttaatattttatcatatc 24909862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 166 - 295
Target Start/End: Complemental strand, 8446888 - 8446761
Alignment:
Q  166 cccctctctctttgtacagacttttttccccactttttattgagttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgag 265  Q
    |||| ||||||||||||||||||||| ||||  |||||||||| |||||||||||||||||||||| | |||||||| | |||||||||||  |||||      
T  8446888 cccccctctctttgtacagactttttccccct-tttttattgaattttagagtttgacaggcataggatggaggcttcctggggtgccaat-tagttggt 8446791  T
Q  266 atgtcgatgttgtctcctgatgtctgtctc 295  Q
    |||||| |||| ||||||||||||||||||    
T  8446790 atgtcggtgttatctcctgatgtctgtctc 8446761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26421344 - 26421234
Alignment:
Q  1 tatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattataga 100  Q
    |||||||||||||||| |||||| |||||||||||| || |||| ||| ||||||||||||||||| |  || || ||||||| ||| ||||||||||||    
T  26421344 tatgggtcatgagatttaaggttttatttggttagacacgcttcaagctgagttgcatatggatttctttcgagatagaattggtctacccaattataga 26421245  T
Q  101 tttccgtagtc 111  Q
    ||||| |||||    
T  26421244 tttccttagtc 26421234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 2899923 - 2900007
Alignment:
Q  210 ttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtct 294  Q
    |||||||||| ||  ||||||| ||||||||||||| ||||||||| | ||||| ||||||  ||| | ||||||||||||||||    
T  2899923 ttttagagttagatgggcataggacggaggctttccagggtgccaacctagttgggatgtcagtgtagcctcctgatgtctgtct 2900007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 20106035 - 20106110
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatatctattttttgatatcggtatataaaaa 424  Q
    ||||||||||||||| |||  |||||||| ||||| ||||||||||||||| | ||| | ||||||||| |||||||    
T  20106035 taatgttgatattttgaaat-agtcataagttttcaaaattttatcatatcgactttctaatatcggtacataaaaa 20106110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 51661675 - 51661757
Alignment:
Q  210 ttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtc 293  Q
    |||||||||||||| ||||||| | ||||  ||  ||||||||||| | ||||| ||||||||||||| ||| |||||||||||    
T  51661675 ttttagagtttgac-ggcataggatggagagttctcggggtgccaacctagttgggatgtcgatgttgcctcttgatgtctgtc 51661757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 8447041 - 8446976
Alignment:
Q  1 tatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatatggattt 66  Q
    ||||||||||  |||| ||||||||||| |||||||||||||||   |  ||||||||||||||||    
T  8447041 tatgggtcattggattcaaggttctattaggttagaaactcttccgacaaagttgcatatggattt 8446976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 27532326 - 27532375
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatat 397  Q
    |||||||||||||||||||| | |||| | ||||| ||||||||||||||    
T  27532326 taatgttgatattttaaaaataatcatgagttttcaaaattttatcatat 27532375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 427
Target Start/End: Complemental strand, 35845571 - 35845490
Alignment:
Q  346 actaatgttgatattttaaaaacagtcataaattttctaaattttatcatatctattttttgatatcggtatataaaaattt 427  Q
    |||||| |||||||||| |||| | || ||||||||  ||||||||||||||| | ||| | ||||| ||| ||||||||||    
T  35845571 actaatattgatattttgaaaataatcgtaaatttttaaaattttatcatatcgactttcttatatcagtacataaaaattt 35845490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 165 - 291
Target Start/End: Complemental strand, 16913498 - 16913373
Alignment:
Q  165 ccccctctctctttgtacagacttttttccccactttttattgagttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttga 264  Q
    |||||||| |||||||||| ||||||||||||  |||||||||| ||| |||||||| ||| ||||| |||||||||| |||| ||||||| | |||||     
T  16913498 ccccctctttctttgtacatacttttttcccctttttttattgaattt-agagtttggcagacataggacggaggcttcccggagtgccaacccagttgg 16913400  T
Q  265 gatgtcgatgttgtctcctgatgtctg 291  Q
    ||||||| |||||||| | ||||||||    
T  16913399 gatgtcggtgttgtcttcggatgtctg 16913373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 44453164 - 44453080
Alignment:
Q  210 ttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtct 294  Q
    |||||||||||||| || |||| |||||||||| |||||||||||| | ||||| ||||||||||| | ||||||||||||||||    
T  44453164 ttttagagtttgacgggtataggacggaggcttcccggggtgccaacctagttgggatgtcgatgtggcctcctgatgtctgtct 44453080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 13336944 - 13337028
Alignment:
Q  210 ttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtct 294  Q
    ||||||||||| || ||||||| |||||||||| |||||||| ||||| ||||| ||||||| ||| | ||||||||||||||||    
T  13336944 ttttagagtttaacgggcataggacggaggcttcccggggtgtcaatctagttgggatgtcggtgtggcctcctgatgtctgtct 13337028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 295
Target Start/End: Original strand, 41068852 - 41068936
Alignment:
Q  211 tttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtctc 295  Q
    ||||||||||| ||||||||| |||||||||| ||||| |||||| | ||||| ||||||| ||||| ||| ||||| |||||||    
T  41068852 tttagagtttggcaggcataggacggaggcttcccgggatgccaacccagttgggatgtcggtgttgcctcatgatgcctgtctc 41068936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 398
Target Start/End: Original strand, 25051391 - 25051441
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatatc 398  Q
    |||||||||||||||||||| | |||| | ||||| |||||||||||||||    
T  25051391 taatgttgatattttaaaaataatcatgagttttcaaaattttatcatatc 25051441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 37996709 - 37996659
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatatc 398  Q
    |||||||||||||||||||| |||||| | ||||| ||||||||| |||||    
T  37996709 taatgttgatattttaaaaatagtcatgagttttcaaaattttattatatc 37996659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 286
Target Start/End: Complemental strand, 33040657 - 33040582
Alignment:
Q  210 ttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgat 286  Q
    |||||||||||||| ||||||  | ||||| ||  ||||||||||| | ||||| ||||||||||||||||| ||||    
T  33040657 ttttagagtttgac-ggcatatgatggaggtttctcggggtgccaacctagttgggatgtcgatgttgtctcttgat 33040582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 44453341 - 44453265
Alignment:
Q  27 tttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattatagattt 103  Q
    |||||||||| |  |||| ||| ||||||||||||||||| |  || ||||||||||   |||||||||||||||||    
T  44453341 tttggttagacaggcttccagcggagttgcatatggatttctttcgagacagaattggctttcccaattatagattt 44453265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 44673758 - 44673679
Alignment:
Q  210 ttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtct 290  Q
    |||||||||||| | ||||||| | ||||  ||| ||||||||||| | ||||| ||||||||||||| ||| ||||||||    
T  44673758 ttttagagtttggc-ggcataggatggagattttgcggggtgccaacctagttgggatgtcgatgttgcctcttgatgtct 44673679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 157 - 295
Target Start/End: Original strand, 13670 - 13804
Alignment:
Q  157 gcctagtcccccctctctctttgtacagacttttttccccactttttattgagttttagagtttgacaggcatagaacggaggctttccggggtgccaat 256  Q
    ||||||||||||||||| ||||||||||||||||| ||    |||||||||| ||| |||||||||  ||||||| ||||| | || ||||||||||||     
T  13670 gcctagtcccccctctccctttgtacagactttttccct---tttttattgaattt-agagtttgatgggcataggacggaagtttcccggggtgccaac 13765  T
Q  257 caagttgagatgtcgatgttgtctcctgatgtctgtctc 295  Q
    | ||||| |||||||  ||||| ||||||||||||||||    
T  13766 ctagttgggatgtcggcgttgtttcctgatgtctgtctc 13804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 13507 - 13589
Alignment:
Q  1 tatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattg 83  Q
    ||||||||||| |||| |||||||||||||||||||||| |||| | | ||| ||||| ||||||| || |||||||||||||    
T  13507 tatgggtcatgggattcaaggttctatttggttagaaacgcttccaactgagctgcatttggatttctatcgcgacagaattg 13589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 4407493 - 4407409
Alignment:
Q  210 ttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtct 294  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||| | ||||| ||||||| ||| | ||||||||||||||||    
T  4407493 ttttagagtttgacgggcataggacggaggctttctggggtgccaacctagttgggatgtcggtgtggcctcctgatgtctgtct 4407409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 398
Target Start/End: Original strand, 24719035 - 24719085
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatatc 398  Q
    |||||||||||||||||||| | |||||||||||| |||||||||||||||    
T  24719035 taatgttgatattttaaaaatactcataaattttcaaaattttatcatatc 24719085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 28937342 - 28937427
Alignment:
Q  210 ttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtct-cctgatgtctgtct 294  Q
    |||||||||||||| ||||||| | |||||||||||||| |||||| | ||||| ||||||| ||| | || ||||||||||||||    
T  28937342 ttttagagtttgacgggcataggatggaggctttccgggatgccaacctagttgggatgtcggtgtggcctccctgatgtctgtct 28937427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 404
Target Start/End: Original strand, 23137363 - 23137419
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatatctatttt 404  Q
    ||||| |||||||||||||| |||||||||||||  ||||||||||||||| |||||    
T  23137363 taatgctgatattttaaaaatagtcataaatttttaaaattttatcatatcaatttt 23137419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 4463514 - 4463430
Alignment:
Q  210 ttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtct 294  Q
    |||||||||||| | ||||||| | |||||||| | |||||||||| | ||||| ||||||  ||| | ||||||||||||||||    
T  4463514 ttttagagtttggcgggcataggatggaggcttcctggggtgccaacctagttgggatgtcagtgtggcctcctgatgtctgtct 4463430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 3997243 - 3997160
Alignment:
Q  211 tttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtct 294  Q
    ||||||| |||  |||||||  |||||||| | ||||| |||||| | ||||| ||||||| ||||| ||||||||||||||||    
T  3997243 tttagagattggtaggcataagacggaggcgtcccgggatgccaacctagttgggatgtcggtgttgcctcctgatgtctgtct 3997160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 2739853 - 2739803
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatatc 398  Q
    ||||||||||||||| |||| |||||||| ||||| |||| ||||||||||    
T  2739853 taatgttgatattttgaaaatagtcataagttttcaaaatgttatcatatc 2739803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 423
Target Start/End: Original strand, 35144409 - 35144483
Alignment:
Q  349 aatgttgatattttaaaaacagtcataaattttctaaattttatcatatctattttttgatatcggtatataaaa 423  Q
    ||||||||||||||||||| | |||| ||||||  ||||||||||||||  ||||| | |||||| | |||||||    
T  35144409 aatgttgatattttaaaaataatcatgaatttttaaaattttatcatatgaattttctcatatcgatgtataaaa 35144483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 1502249 - 1502330
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatatctattttttgatatcggtatataaaaatttgc 429  Q
    ||||||| ||||||| |||| ||| || | ||||| |||||| |||||||| ||||||| |||||  || ||||||||||||    
T  1502249 taatgtttatattttgaaaatagtgatgagttttcaaaatttaatcatatcgattttttcatatccatacataaaaatttgc 1502330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 15468339 - 15468255
Alignment:
Q  210 ttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtct 294  Q
    |||||||||| |||  |||||| || ||||| | ||| |||||||| | ||||| ||||||| ||| | ||||||||||||||||    
T  15468339 ttttagagttagacgagcataggacagaggcctcccgaggtgccaacctagttgggatgtcggtgtggcctcctgatgtctgtct 15468255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 24865253 - 24865173
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatatctattttttgatatcggtatataaaaatttg 428  Q
    |||| |||||||||| |||| |||||| ||||||  ||||||||||||||| | ||||| ||||   || |||||||||||    
T  24865253 taattttgatattttgaaaatagtcatgaatttttaaaattttatcatatcaactttttcatatatctacataaaaatttg 24865173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 416
Target Start/End: Complemental strand, 25480524 - 25480456
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatatctattttttgatatcggta 416  Q
    |||||||||||||||||||| | |||| | ||||  ||||||||| ||||| ||||| | |||||||||    
T  25480524 taatgttgatattttaaaaataatcatgagtttttaaaattttattatatcgattttctcatatcggta 25480456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 3833510 - 3833426
Alignment:
Q  210 ttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtct 294  Q
    |||||||||| ||| ||||||| |||||||||| |||||||||||| | ||||| ||||||| ||| | ||||||||||||||||    
T  3833510 ttttagagttagacgggcataggacggaggcttcccggggtgccaacctagttgggatgtcggtgtagcctcctgatgtctgtct 3833426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 24961877 - 24961925
Alignment:
Q  245 cggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtc 293  Q
    ||||||||||| | ||||| |||||||||| ||||||||||||||||||    
T  24961877 cggggtgccaacctagttgggatgtcgatgatgtctcctgatgtctgtc 24961925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 31893108 - 31893191
Alignment:
Q  210 ttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtct 294  Q
    |||||||||||||| ||||||| | ||||||||  |||| |||||| | ||||| ||||||| || || ||||||||||||||||    
T  31893108 ttttagagtttgacgggcataggatggaggcttctcgggatgccaacctagttgggatgtcggtg-tgcctcctgatgtctgtct 31893191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 907706 - 907660
Alignment:
Q  247 gggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtc 293  Q
    ||||||||||| ||||| |||||||||| |||||| |||||||||||    
T  907706 gggtgccaatctagttgggatgtcgatgatgtctcttgatgtctgtc 907660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 50798888 - 50798838
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatatc 398  Q
    |||||||||||||||||||| |  ||||||||||| ||| |||||||||||    
T  50798888 taatgttgatattttaaaaatatccataaattttcaaaaatttatcatatc 50798838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 8681428 - 8681344
Alignment:
Q  210 ttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtct 294  Q
    |||||||||||| | | ||||| ||||||||||  || ||| |||| | | ||||||||||  ||| ||||||||||||||||||    
T  8681428 ttttagagtttggcggacataggacggaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatgtctgtct 8681344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 8681604 - 8681520
Alignment:
Q  27 tttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattatagatttccgtagtc 111  Q
    |||||||||| || |||| ||| ||||||||||||||||| || || ||||||| ||   | ||||| ||||||||| |||||||    
T  8681604 tttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtagtc 8681520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 28948865 - 28948947
Alignment:
Q  210 ttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgt 292  Q
    |||||||||||| |||||| || ||||||| || ||||||||||||   ||||| ||||||| ||||||||||||||||||||    
T  28948865 ttttagagtttggcaggcagaggacggaggtttcccggggtgccaacatagttgggatgtcggtgttgtctcctgatgtctgt 28948947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 24361079 - 24361002
Alignment:
Q  6 gtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattg 83  Q
    ||||||||||| |||||| |||||||||||| || |||||||| ||||| ||||||||||| |  || ||||||||||    
T  24361079 gtcatgagattcaaggttatatttggttagacacgcttctagctgagttacatatggatttctttcgagacagaattg 24361002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 24450626 - 24450703
Alignment:
Q  350 atgttgatattttaaaaacagtcataaattttctaaattttatcatatctattttttgatatcggtatataaaaattt 427  Q
    |||||||||||||||||| |||||| | ||||| ||||||||||||||| ||||| | ||||  ||| ||||||||||    
T  24450626 atgttgatattttaaaaatagtcatgagttttcaaaattttatcatatcgattttctcatatatgtacataaaaattt 24450703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 45002691 - 45002740
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatat 397  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||||||    
T  45002691 taatgttgatattttaaaaatagccataaattttcaaaattttatcatat 45002740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 24360948 - 24360865
Alignment:
Q  211 tttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtct 294  Q
    ||||||||||| ||||||||| ||  |||||| ||||| |||||| | || || ||||||| |||||| |||||||||||||||    
T  24360948 tttagagtttggcaggcataggacaaaggcttcccgggatgccaacctagctgggatgtcggtgttgtttcctgatgtctgtct 24360865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 32234510 - 32234449
Alignment:
Q  210 ttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcg 271  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||||| | ||||| |||||||    
T  32234510 ttttagagttagacaggcataggacggaggcttcccgaggtgccaacctagttgggatgtcg 32234449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 38401756 - 38401818
Alignment:
Q  353 ttgatattttaaaaacagtcataaattttctaaattttatcatatctattttttgatatcggt 415  Q
    ||||||||||||||| |||||| ||||||| ||||||||  ||||| | ||||| ||||||||    
T  38401756 ttgatattttaaaaatagtcatgaattttcaaaattttacaatatcaactttttcatatcggt 38401818  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 398
Target Start/End: Original strand, 41374313 - 41374359
Alignment:
Q  352 gttgatattttaaaaacagtcataaattttctaaattttatcatatc 398  Q
    |||||||||||||||| |||||| | ||||| |||||||||||||||    
T  41374313 gttgatattttaaaaatagtcatgacttttcaaaattttatcatatc 41374359  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 14640035 - 14639966
Alignment:
Q  225 ggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtct 294  Q
    ||||||| |||||||||| || | || ||||   ||||| ||||||||||| ||||||||||||||||||    
T  14640035 ggcataggacggaggcttccccgagtaccaacatagttgtgatgtcgatgtggtctcctgatgtctgtct 14639966  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 30418972 - 30419056
Alignment:
Q  210 ttttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtct 294  Q
    |||||||||| ||| | ||||| ||||||| || ||| |||||||| | ||||| ||||||||||| |  ||||| |||||||||    
T  30418972 ttttagagttagacggccataggacggaggattcccgtggtgccaacctagttgggatgtcgatgtggcttcctggtgtctgtct 30419056  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 392
Target Start/End: Original strand, 30930060 - 30930104
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttat 392  Q
    |||||||||||| || |||| |||||||||||||| |||||||||    
T  30930060 taatgttgatatgttgaaaatagtcataaattttcaaaattttat 30930104  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 25247692 - 25247612
Alignment:
Q  211 tttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctg 291  Q
    ||||||||||| ||||||||| |||||||||| | ||||| |||| | | ||| ||||||| |||||||||||||||||||    
T  25247692 tttagagtttggcaggcataggacggaggcttcctggggtcccaacctatttgggatgtcggtgttgtctcctgatgtctg 25247612  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 25311476 - 25311396
Alignment:
Q  211 tttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctg 291  Q
    ||||||||||| ||||||||| |||||||||| | ||||| |||| | | ||| ||||||| |||||||||||||||||||    
T  25311476 tttagagtttggcaggcataggacggaggcttcctggggtcccaacctatttgggatgtcggtgttgtctcctgatgtctg 25311396  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 25247894 - 25247801
Alignment:
Q  18 aaggttctatttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattatagatttccgtagtc 111  Q
    ||||||||||||||||||| || |||||||| ||||||||||||||||| || || | |  ||||| ||| ||| ||||| ||||||| |||||    
T  25247894 aaggttctatttggttagacacgcttctagctgagttgcatatggatttctatcgagtctaaattgctctaccctattattgatttccttagtc 25247801  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 25311678 - 25311585
Alignment:
Q  18 aaggttctatttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattatagatttccgtagtc 111  Q
    ||||||||||||||||||| || |||||||| ||||||||||||||||| || || | |  ||||| ||| ||| ||||| ||||||| |||||    
T  25311678 aaggttctatttggttagacacgcttctagctgagttgcatatggatttctatcgagtctaaattgctctaccctattattgatttccttagtc 25311585  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 30413766 - 30413846
Alignment:
Q  211 tttagagtttgacaggcatagaacggaggctttccggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctg 291  Q
    ||||||||||| ||   |||| || ||||||||||||||||||||   ||||  ||||||| |||||||||||||||||||    
T  30413766 tttagagtttggcaaaaataggaccgaggctttccggggtgccaacttagttacgatgtcggtgttgtctcctgatgtctg 30413846  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 426
Target Start/End: Original strand, 17762126 - 17762209
Alignment:
Q  343 aacactaatgttgatattttaaaaacagtcataaattttctaaattttatcatatctattttttgatatcggtatataaaaatt 426  Q
    |||| ||||||||||||||| |||| |||||  | ||||| ||||||||||||||| | ||| | ||||  |||||||||||||    
T  17762126 aacattaatgttgatattttgaaaatagtcacgagttttcaaaattttatcatatcaactttctcatatatgtatataaaaatt 17762209  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 24652612 - 24652562
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatatc 398  Q
    |||||||||||||||||||| ||||| |||||||  ||| |||||||||||    
T  24652612 taatgttgatattttaaaaatagtcacaaattttaaaaaatttatcatatc 24652562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 3420053 - 3420089
Alignment:
Q  346 actaatgttgatattttaaaaacagtcataaattttc 382  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  3420053 actaatgttgatattttgaaaatagtcataaattttc 3420089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 424
Target Start/End: Original strand, 41405404 - 41405483
Alignment:
Q  344 acactaatgttgatattttaaaaacagtcataaattttctaaattttatcatatctattttttgatatcggtatataaaaa 424  Q
    |||||||||| ||||||| ||||| ||||| || ||||| ||||||||||||||| |  |||| |||| |||| |||||||    
T  41405404 acactaatgtagatattt-aaaaatagtcacaagttttcaaaattttatcatatcgacctttttatattggtacataaaaa 41405483  T

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Target: scaffold1609 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1609
Description:

Target: scaffold1609; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 443 - 524
Alignment:
Q  348 taatgttgatattttaaaaacagtcataaattttctaaattttatcatatctattttttgatatcggtatataaaaatttgc 429  Q
    ||||||||||||||| |||| |||||   |||||| ||||||||||||||| | ||| | ||||  ||||||||||||||||    
T  443 taatgttgatattttgaaaatagtcactgattttcaaaattttatcatatcaactttctcatatatgtatataaaaatttgc 524  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 173897 - 173945
Alignment:
Q  245 cggggtgccaatcaagttgagatgtcgatgttgtctcctgatgtctgtc 293  Q
    ||||||||||| | ||||| |||||||||| ||||||||||||||||||    
T  173897 cggggtgccaacctagttgggatgtcgatgatgtctcctgatgtctgtc 173945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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