View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7417_low_7 (Length: 452)
Name: NF7417_low_7
Description: NF7417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7417_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 50 - 356
Target Start/End: Original strand, 3137658 - 3137964
Alignment:
| Q |
50 |
ccaaaaattgcaatcaggaggctcacacactcaaaaattgcaatcaatgtcacgtggaaatcagccacgtgaattaagcttgacaggtgtttgattgatt |
149 |
Q |
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| T |
3137658 |
ccaaaaattgcaatcaggaggctcacacactcaaaaattgcaatcaatgtcatgtggaaatcagccacgtgaattaagcttgacaggtgtttgattgatt |
3137757 |
T |
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| Q |
150 |
cttgttttgtagtttcatacccatcaatggatcgaacacgccatcgtccgtctcaacgtcgtcgttccatctcccggcgctgaagtttccgtcgttgagg |
249 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| |
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| T |
3137758 |
cttgttttgtagtttcatacccattaatggatcgaacacgccatcgtccgtctcaacgtcgccgttccatctcccgccgctgaagtttccgtcgtcgagg |
3137857 |
T |
|
| Q |
250 |
aaaagattgaaatcgatgttggggttgaagaagttcccagtatcacgagaattgcgacgattaccattgaagtttcaggtgacaaagttaccattgttta |
349 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3137858 |
aaaagattgaaatcgacgttgtggttgaagaagttcccagtatcacgagaattgcggcgattaccattgaagtttcaggtgacaaagttaccattgttta |
3137957 |
T |
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| Q |
350 |
gggtttc |
356 |
Q |
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||||||| |
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| T |
3137958 |
gggtttc |
3137964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 50 - 356
Target Start/End: Complemental strand, 42837137 - 42836829
Alignment:
| Q |
50 |
ccaaaaattgcaatcaggaggctcacacactcaaaaattgcaatcaatgtcacgtggaaatcagccacgtgaattaagcttgacaggtgtttgattgatt |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42837137 |
ccaaaaattgcaatcaggaggctcacacactcaaaaattgcaatcaatgttatgtggaaatcagccacgtgaattaagcttgagaggtgtttgattgatt |
42837038 |
T |
|
| Q |
150 |
cttgttttgtagtttcatacccatcaatggatcgaacacgccatcgtccgtctcaacgtcgtcgt--tccatctcccggcgctgaagtttccgtcgttga |
247 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||| ||| |||||||||| || ||||||||||||||| || |
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| T |
42837037 |
cttgttttgtagcttcatacccattaatggatcgaacacgccgtcgtccgtctcaatgtcgccgtcgtccatctcccaccgttgaagtttccgtcgtcga |
42836938 |
T |
|
| Q |
248 |
ggaaaagattgaaatcgatgttggggttgaagaagttcccagtatcacgagaattgcgacgattaccattgaagtttcaggtgacaaagttaccattgtt |
347 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
42836937 |
ggaaaagattgaaatcgatgttgtggttgaagaagttcccagtatcacgagaattgcggcgattaccattgaagtttcaggtgaccaagttaccattgtt |
42836838 |
T |
|
| Q |
348 |
tagggtttc |
356 |
Q |
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||||||||| |
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| T |
42836837 |
tagggtttc |
42836829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 3137606 - 3137635
Alignment:
| Q |
18 |
atagtattgcgggtctattggaatcaatgg |
47 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3137606 |
atagtattgcgggtctattggaatcaatgg |
3137635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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