View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7418_low_5 (Length: 337)

Name: NF7418_low_5
Description: NF7418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7418_low_5
NF7418_low_5
[»] chr1 (5 HSPs)
chr1 (1-316)||(28045570-28045890)
chr1 (165-221)||(21537907-21537963)
chr1 (165-225)||(30800461-30800521)
chr1 (149-197)||(11897074-11897122)
chr1 (149-217)||(16448150-16448218)
[»] chr8 (4 HSPs)
chr8 (149-217)||(42842868-42842936)
chr8 (149-217)||(24692021-24692088)
chr8 (149-219)||(28463631-28463701)
chr8 (149-186)||(33057667-33057704)
[»] chr7 (3 HSPs)
chr7 (149-225)||(7269439-7269515)
chr7 (167-232)||(14706734-14706799)
chr7 (153-181)||(19418992-19419020)
[»] scaffold0011 (1 HSPs)
scaffold0011 (149-229)||(231333-231413)
[»] chr4 (2 HSPs)
chr4 (149-217)||(17344233-17344301)
chr4 (148-217)||(35663933-35664002)
[»] chr3 (1 HSPs)
chr3 (149-189)||(38080657-38080697)
[»] chr2 (1 HSPs)
chr2 (149-197)||(16734803-16734851)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 28045570 - 28045890
Alignment:
Q  1 gaggctggtcttgtcccattaccatcttattcagatgacttcacttaat----gcaattcatacaaaaccgatgcaatcaaagctcatccacatcagaat 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    |||||| ||||||||| |||||||||||||||||||||||||| |||    
T  28045570 gaggctggtcttgtcccattaccatcttattcagatgacttcacttaattaacgcaattgatacaaaactgatgcaatcaaagctcatccacatcaaaat 28045669  T
Q  97 agcaagaagtgtaaaaatataaatggactatctaattactctctcgatcctcataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattt 196  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||    
T  28045670 aggaagaagtgtaaaaatataaatggactatctaattactctctcgatcctcataagaaaaattttaatcaacaagaattgatgtatctgatctgaattt 28045769  T
Q  197 tgagtcagatatatcaactttcgttaacctaattttttaataataagaccgaagtgagtactta-ttttaaaaatttacatttaaatctactttatattt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  28045770 tgagtcagatatatcaactttcgttaacctaattttttaataataagaccgaagtgagtacttatttttaaaaatttacatttcaatctactttatattt 28045869  T
Q  296 gatgaggttgaatttttggtc 316  Q
    |||||||||||||||||||||    
T  28045870 gatgaggttgaatttttggtc 28045890  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 21537963 - 21537907
Alignment:
Q  165 tcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcgtt 221  Q
    ||||||||| ||||||||||||| || || ||||| ||||||| |||||||||||||    
T  21537963 tcaacaaaagttgatgtatctgaactaaaatttgaatcagatacatcaactttcgtt 21537907  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 30800461 - 30800521
Alignment:
Q  165 tcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcgttaacc 225  Q
    ||||||||| |||||||||||   ||||||||||| ||||||| ||||||||| |||||||    
T  30800461 tcaacaaaagttgatgtatctatactgaattttgaatcagatacatcaacttttgttaacc 30800521  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 11897074 - 11897122
Alignment:
Q  149 ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaatttt 197  Q
    |||||| |||||| | ||||||||| ||||||||||||| |||||||||    
T  11897074 ataagagaaagttaggtcaacaaaagttgatgtatctgaactgaatttt 11897122  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 16448218 - 16448150
Alignment:
Q  149 ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaacttt 217  Q
    |||||| |||||| | ||||||||| ||||||||||||  |||||||||||  |||||| || ||||||    
T  16448218 ataagagaaagttgggtcaacaaaagttgatgtatctggactgaattttgaaccagatacataaacttt 16448150  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 42842936 - 42842868
Alignment:
Q  149 ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaacttt 217  Q
    |||||||||| | |||||||||||||||||||||| ||| || |||||||| |||||| ||||||||||    
T  42842936 ataagaaaaaatctgatcaacaaaaattgatgtatttgaactaaattttgaatcagatgtatcaacttt 42842868  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 24692088 - 24692021
Alignment:
Q  149 ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaacttt 217  Q
    ||||||||||||| | ||||||||| ||||||||||||| ||||||||| |  ||||||||||||||||    
T  24692088 ataagaaaaagttaggtcaacaaaagttgatgtatctgaactgaatttt-aaccagatatatcaacttt 24692021  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 28463631 - 28463701
Alignment:
Q  149 ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcg 219  Q
    |||||| |||||| | ||||||||| ||||||||| ||  |||||||||||  ||||||||||||||||||    
T  28463631 ataagagaaagttgggtcaacaaaagttgatgtatttggactgaattttgaaccagatatatcaactttcg 28463701  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 33057704 - 33057667
Alignment:
Q  149 ataagaaaaagtttgatcaacaaaaattgatgtatctg 186  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  33057704 ataagagaaagtttggtcaacaaaaattgatgtatctg 33057667  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 7269515 - 7269439
Alignment:
Q  149 ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcgttaacc 225  Q
    ||||||||||||| | ||||||||||||||||||||| | ||||||||| |  |||||  ||||||||| |||||||    
T  7269515 ataagaaaaagttgggtcaacaaaaattgatgtatctaaactgaatttttaaccagatgcatcaacttttgttaacc 7269439  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 14706734 - 14706799
Alignment:
Q  167 aacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcgttaacctaatttt 232  Q
    ||||||| |||||||||||||  |||||| | | ||||||||||||||||| ||| ||| ||||||    
T  14706734 aacaaaagttgatgtatctgaattgaattgttaatcagatatatcaacttttgttgaccgaatttt 14706799  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 181
Target Start/End: Original strand, 19418992 - 19419020
Alignment:
Q  153 gaaaaagtttgatcaacaaaaattgatgt 181  Q
    |||||||||||||||||||||||||||||    
T  19418992 gaaaaagtttgatcaacaaaaattgatgt 19419020  T

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Target: scaffold0011 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 231413 - 231333
Alignment:
Q  149 ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcgttaacctaat 229  Q
    |||||| |||||| ||||||||||| || |||||||||  |||||||||||   || |||||||||||| ||| |||||||    
T  231413 ataagagaaagttggatcaacaaaagtttatgtatctggactgaattttgaactaggtatatcaacttttgttgacctaat 231333  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 17344233 - 17344301
Alignment:
Q  149 ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaacttt 217  Q
    |||||| ||||||  |||||||||| ||||||||||||| ||||||||| | || |||| |||||||||    
T  17344233 ataagagaaagttaaatcaacaaaagttgatgtatctgaactgaatttttaatcggatacatcaacttt 17344301  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 35663933 - 35664002
Alignment:
Q  148 cataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaacttt 217  Q
    ||||||| |||||| | | |||||||||||||||||||| ||  ||||||||  |||||| |||||||||    
T  35663933 cataagagaaagttgggtaaacaaaaattgatgtatctggtccaaattttgaaccagatacatcaacttt 35664002  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 38080697 - 38080657
Alignment:
Q  149 ataagaaaaagtttgatcaacaaaaattgatgtatctgatc 189  Q
    |||||||||| ||||||||||| |||||||||||| |||||    
T  38080697 ataagaaaaaatttgatcaacataaattgatgtatttgatc 38080657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 16734803 - 16734851
Alignment:
Q  149 ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaatttt 197  Q
    |||||| |||||||| ||||||||| ||||||||||||  |||||||||    
T  16734803 ataagagaaagtttggtcaacaaaagttgatgtatctggactgaatttt 16734851  T

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