View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7418_low_6 (Length: 318)

Name: NF7418_low_6
Description: NF7418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7418_low_6
NF7418_low_6
[»] chr2 (9 HSPs)
chr2 (1-301)||(24168823-24169115)
chr2 (38-210)||(5463930-5464106)
chr2 (38-213)||(15112889-15113068)
chr2 (95-213)||(41962137-41962255)
chr2 (35-132)||(5937999-5938100)
chr2 (175-235)||(45526696-45526756)
chr2 (35-129)||(18963883-18963981)
chr2 (251-298)||(45526749-45526796)
chr2 (35-132)||(34948886-34948988)
[»] chr7 (15 HSPs)
chr7 (38-298)||(24686976-24687242)
chr7 (38-211)||(35584609-35584786)
chr7 (38-210)||(7254939-7255115)
chr7 (38-210)||(38264592-38264768)
chr7 (38-210)||(33849187-33849363)
chr7 (38-210)||(38257017-38257193)
chr7 (38-210)||(26792405-26792581)
chr7 (38-213)||(29331828-29332007)
chr7 (38-210)||(15032120-15032296)
chr7 (38-226)||(45490630-45490822)
chr7 (38-203)||(37999079-37999249)
chr7 (38-157)||(109111-109234)
chr7 (48-157)||(43748792-43748905)
chr7 (173-236)||(1852682-1852745)
chr7 (35-91)||(26187799-26187855)
[»] chr3 (19 HSPs)
chr3 (94-298)||(18876578-18876782)
chr3 (35-301)||(53394332-53394606)
chr3 (38-213)||(9127441-9127620)
chr3 (38-213)||(9135548-9135727)
chr3 (94-235)||(21979406-21979547)
chr3 (94-235)||(22001837-22001978)
chr3 (38-210)||(41974116-41974292)
chr3 (38-212)||(49326861-49327039)
chr3 (38-213)||(8486052-8486231)
chr3 (38-203)||(16483268-16483436)
chr3 (38-210)||(30389327-30389504)
chr3 (38-211)||(47374313-47374490)
chr3 (38-213)||(48062596-48062775)
chr3 (238-301)||(21979363-21979426)
chr3 (238-301)||(22001794-22001857)
chr3 (38-131)||(44207211-44207308)
chr3 (35-132)||(27024809-27024911)
chr3 (177-226)||(30389600-30389649)
chr3 (177-225)||(16483538-16483586)
[»] chr5 (14 HSPs)
chr5 (38-225)||(5343273-5343464)
chr5 (38-211)||(32747254-32747431)
chr5 (38-210)||(6431959-6432135)
chr5 (38-211)||(1709944-1710121)
chr5 (38-157)||(24855515-24855638)
chr5 (173-235)||(4102023-4102085)
chr5 (35-129)||(27949120-27949218)
chr5 (48-132)||(41615775-41615863)
chr5 (95-129)||(27689949-27689983)
chr5 (238-298)||(4102065-4102125)
chr5 (35-127)||(25723981-25724079)
chr5 (95-132)||(23344333-23344370)
chr5 (99-132)||(28334916-28334949)
chr5 (177-225)||(32747528-32747576)
[»] chr4 (15 HSPs)
chr4 (38-213)||(38990208-38990387)
chr4 (38-210)||(52919000-52919176)
chr4 (38-213)||(47604180-47604358)
chr4 (48-210)||(53269801-53269967)
chr4 (38-211)||(40761903-40762080)
chr4 (38-210)||(40692526-40692702)
chr4 (38-203)||(55611940-55612108)
chr4 (38-213)||(45659070-45659249)
chr4 (38-224)||(47985217-47985407)
chr4 (48-213)||(44108504-44108673)
chr4 (38-203)||(53511938-53512107)
chr4 (175-277)||(11648230-11648329)
chr4 (38-136)||(11648121-11648223)
chr4 (38-99)||(13721762-13721823)
chr4 (177-225)||(55611790-55611838)
[»] chr8 (5 HSPs)
chr8 (38-211)||(24831166-24831343)
chr8 (38-205)||(11279-11450)
chr8 (175-277)||(41835219-41835318)
chr8 (38-136)||(41835110-41835212)
chr8 (173-236)||(11457554-11457617)
[»] chr1 (15 HSPs)
chr1 (38-205)||(5749462-5749633)
chr1 (38-210)||(12524456-12524632)
chr1 (38-205)||(10222770-10222941)
chr1 (38-203)||(6605170-6605339)
chr1 (38-211)||(14270868-14271045)
chr1 (38-211)||(3474812-3474989)
chr1 (38-213)||(39598621-39598800)
chr1 (38-158)||(21191328-21191452)
chr1 (38-157)||(10312775-10312898)
chr1 (38-156)||(4851748-4851869)
chr1 (104-210)||(7199028-7199136)
chr1 (35-129)||(29251223-29251321)
chr1 (35-100)||(7564217-7564282)
chr1 (94-132)||(30517870-30517908)
chr1 (35-91)||(21535379-21535435)
[»] chr6 (6 HSPs)
chr6 (99-235)||(3514050-3514185)
chr6 (38-210)||(13037299-13037475)
chr6 (38-178)||(480727-480871)
chr6 (35-129)||(12304746-12304844)
chr6 (238-301)||(3514007-3514070)
chr6 (95-127)||(20819108-20819140)
[»] scaffold0168 (2 HSPs)
scaffold0168 (38-145)||(12575-12686)
scaffold0168 (138-213)||(16100-16175)
[»] scaffold0064 (2 HSPs)
scaffold0064 (251-301)||(62415-62465)
scaffold0064 (172-235)||(62458-62521)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 24168823 - 24169115
Alignment:
Q  1 aaggtaacataaataaaaacaacatattcatctagtgtttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttat----cag 96  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    |||    
T  24168823 aaggtgacataaataaaaacagcatattcatctagtgtttcaagagaatttctttgagttagatcctactgccttgcc-aatgacatatttatctggcag 24168921  T
Q  97 gcagcaagatctaactcatagcaacctcttgatatttttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttga 196  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||           || |||||||||||||||||||||||||||||| |||    
T  24168922 gcagcaagatctaactcataacaacctcttgatatttttgagttatctatct-----------aataaggagtaactatatatttttgaaagcatgctga 24169010  T
Q  197 ggatcttcaccatgctggcacatagagagcaatctatttgtcacatagaccgccatctattttgcggcagcatgacaaagatactcagcacaatgacaaa 296  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||  || |||||||||||||||||||||||||||| |||||||||||||||||    
T  24169011 ggatcttcaccaggctggcacatagagagcaatcgatttgtcacatagagagctatctattttgcggcagcatgacaaagatcctcagcacaatgacaaa 24169110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 5464106 - 5463930
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||| |||    |||||||||||||||||||||||||||||||| ||||||    
T  5464106 tttcaagaggatttctttgagttagatcctgctgccttgccaaatgacatattcatctggcaggcagcaagatctaactcatagcaacctcttaatattt 5464007  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatg 210  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||||||||||| |||||| |||||||||||| ||||    
T  5464006 ttgagttatctatctatcaaggaggcatcaatgagtatctatatatttttgacagcatgctgaggatcttcatcatg 5463930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 15113068 - 15112889
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||||| ||||||| |||||||||||||| |||    |||||||||||||||||||||| ||||||||||||||||    
T  15113068 tttcaagaggatttctttgagttagatcctgctgccttaccaaatgacatattcatctggcaggcagcaagatctaactcataacaacctcttgatattt 15112969  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctg 213  Q
    |||| |||||||| || |||||||||| ||| ||||| ||||||||||||||||||||| ||| |||||||| |||||||    
T  15112968 ttgacttatctatgtatcaaggaggcatcaaagagtatctatatatttttgaaagcatgctgaagatcttcatcatgctg 15112889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 41962137 - 41962255
Alignment:
Q  95 aggcagcaagatctaactcatagcaacctcttgatatttttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgtt 194  Q
    |||||| | |||| ||||||||| || ||||||||||||||||||||||||| || |||||||||| |||| |||| |||||||||||||| |||||  |    
T  41962137 aggcagaaggatcgaactcatagaaagctcttgatatttttgagttatctatgtatcaaggaggcatcaagcagtatctatatatttttgacagcatact 41962236  T
Q  195 gaggatcttcaccatgctg 213  Q
    ||||||||||| |||||||    
T  41962237 gaggatcttcatcatgctg 41962255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 5938100 - 5937999
Alignment:
Q  35 gtgtttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttat----caggcagcaagatctaactcatagcaacctcttgata 130  Q
    |||||||||||  |||||| |||| |||||||| |||||||||||||||||||||| ||    |||| ||||||||||||||||||| ||||||||||||    
T  5938100 gtgtttcaagaggatttctctgagctagatcctgctgccttgccaaatgacatattcatgtggcagggagcaagatctaactcatagaaacctcttgata 5938001  T
Q  131 tt 132  Q
    ||    
T  5938000 tt 5937999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 45526696 - 45526756
Alignment:
Q  175 tatatttttgaaagcatgttgaggatcttcaccatgctggcacatagagagcaatctattt 235  Q
    |||||||||||||||||| ||||||||||||||||||||| |  |||||||||||||||||    
T  45526696 tatatttttgaaagcatgctgaggatcttcaccatgctggtagttagagagcaatctattt 45526756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 18963883 - 18963981
Alignment:
Q  35 gtgtttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttat----caggcagcaagatctaactcatagcaacctcttgat 129  Q
    |||||||||||  |||||||||||||||||||| ||  ||||||||||||| |||| ||    |||| || |||||||||||||||| |||||||||||    
T  18963883 gtgtttcaagaggatttctttgagttagatcctgctctcttgccaaatgacttattcatctggcaggaagtaagatctaactcatagaaacctcttgat 18963981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 298
Target Start/End: Original strand, 45526749 - 45526796
Alignment:
Q  251 atctattttgcggcagcatgacaaagatactcagcacaatgacaaaaa 298  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  45526749 atctattttgcggcagcatgacaaagatcatcagcacaatgacaaaaa 45526796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 34948886 - 34948988
Alignment:
Q  35 gtgtttcaagaaaatttctttgagttag-atcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgat 129  Q
    |||||||||||  |||| | |||| ||| ||||| |||||||||||||||||||||| |||    | ||||||||||||| ||||||| |||||| ||||    
T  34948886 gtgtttcaagaggatttttctgagctagcatcctgctgccttgccaaatgacatattcatctggaacgcagcaagatctagctcatagaaacctcatgat 34948985  T
Q  130 att 132  Q
    |||    
T  34948986 att 34948988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 38 - 298
Target Start/End: Complemental strand, 24687242 - 24686976
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| | ||| ||||||| |||||||||| |||    |||||||||||||||||||||||||||||||||||||||    
T  24687242 tttcaagaggatttctttgagttagatcttgctggcttgccacatgacatattcatctggcaggcagcaagatctaactcatagcaacctcttgatattt 24687143  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctggcacatagagagcaatctat 233  Q
    ||||||||| |||||| ||| |||||| ||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24687142 ttgagttatttatctatcaaagaggcagcaaggagtatctatatatatttgaaagcatgttgaggatcttcatcatgctggcacatagagagcaatctat 24687043  T
Q  234 ttgtcacatagaccg--ccatctattttgcggcagcatgacaaagatactcagcacaatgacaaaaa 298  Q
    ||||||||||||  |  | |||||||||||| ||||||||||||||| || ||||||||||||||||    
T  24687042 ttgtcacatagagagagcaatctattttgcgacagcatgacaaagatccttagcacaatgacaaaaa 24686976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 35584786 - 35584609
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| | |||||||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||    
T  35584786 tttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatccggcaggcagcaagatctaactcatagcaacctcttgatattt 35584687  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgc 211  Q
    ||||||||||||| || |||||||||| ||||||||| |||||||||||||| | |||| |||||||||||| |||||    
T  35584686 ttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacaacatgatgaggatcttcatcatgc 35584609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 7255115 - 7254939
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  ||||||||||||||||||||  ||||||||||||||||||||| |||    ||||||||||||||||||||||||||  |||| ||||||    
T  7255115 tttcaagaggatttctttgagttagatcctgatgccttgccaaatgacatattcatctggtaggcagcaagatctaactcatagcaatatcttaatattt 7255016  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatg 210  Q
    |||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||    
T  7255015 ttgagttatctatctatcaaggaggcatcaaggagtatctatatatttttgacagcatgttgaggatcttcatcatg 7254939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 38264768 - 38264592
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| | |||||||||||||||||||||| |||    |||||||||||||||||||||||||||||||| ||||||    
T  38264768 tttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggaaggcagcaagatctaactcatagcaacctcttaatattt 38264669  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatg 210  Q
    ||||||||||||| || |||||||||| ||||||||| |||||||||||||| |||||| |||||||||||| ||||    
T  38264668 ttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgaggatcttcatcatg 38264592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 38 - 210
Target Start/End: Original strand, 33849187 - 33849363
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||| ||| | ||||||||||| |||||||||| |||    |||||||| ||||||||||||||||||||||||||||||    
T  33849187 tttcaagaggatttctttgagttaaatcatgctgccttgccacatgacatattcatctggcaggcagcacgatctaactcatagcaacctcttgatattt 33849286  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatg 210  Q
    ||||||||||||| || ||| |||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||    
T  33849287 ttgagttatctatgtatcaaagaggcatcaaggagtatctatatatttttgatagcatgttgaggatcttcatcatg 33849363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 38257193 - 38257017
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| | |||||||||||||||||||||| |||    ||||| |||||||||||||||||||||||||| ||||||    
T  38257193 tttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggaaggcaacaagatctaactcatagcaacctcttaatattt 38257094  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatg 210  Q
    ||||||||||||| || |||||||||| |||||||||  ||||||||||||| |||||| |||||||||||| ||||    
T  38257093 ttgagttatctatatatcaaggaggcatcaaggagtatatatatatttttgacagcatgctgaggatcttcatcatg 38257017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 38 - 210
Target Start/End: Original strand, 26792405 - 26792581
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcaggcag----caagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||||  || ||||||||| ||||||||| |||||||||    |||||||||||||||||||||||||||||| ||    
T  26792405 tttcaagaggatttctttgagttagatccatctaccttgccaagtgacatattcatcaggcagacagcaagatctaactcatagcaacctcttgataatt 26792504  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatg 210  Q
    ||||||||||| | || |||||||||| ||||||||| |||||||||||||| |||||| |||||||||||| ||||    
T  26792505 ttgagttatctgtgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgaggatcttcatcatg 26792581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 29332007 - 29331828
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| |  |||| |||||||||||||||| ||     |||||||||||||||||||||| ||| ||||||||||||    
T  29332007 tttcaagaggatttctttgagttagatcttgttgccatgccaaatgacatattcatttggtaggcagcaagatctaactcataacaatctcttgatattt 29331908  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctg 213  Q
    ||||||||||||| || |||||||||| ||||||||| |||||||||||||| |||||| |||||||||||| |||||||    
T  29331907 ttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgaggatcttcatcatgctg 29331828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 15032296 - 15032120
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcaggcag----caagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  ||||||||||| |||||| | |||||||||||||||||||||| ||| |||||    |||||||||||||||||||||||||||||||||    
T  15032296 tttcaagaggatttctttgagctagatcttgctgccttgccaaatgacatattcatctggcagacagcaagatctaactcatagcaacctcttgatattt 15032197  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatg 210  Q
    ||||||||| | | || |||||||||| ||| ||||| |||||||||||||| |||||| |||||||||||| ||||    
T  15032196 ttgagttatatgtgtatcaaggaggcatcaaagagtatctatatatttttgacagcatgctgaggatcttcatcatg 15032120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 38 - 226
Target Start/End: Original strand, 45490630 - 45490822
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  ||||||||||||| |||||| ||  |||||||||||||||||| |||    |||||| | |||| ||||||||| |||||||||||||||    
T  45490630 tttcaagaggatttctttgagttcgatcctgctatcttgccaaatgacatattcatctggcaggcagaaggatcgaactcatagaaacctcttgatattt 45490729  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctggcacatagagagc 226  Q
    |||| |||||||| || |||||||||| ||||||||| |||||||||||||| |||||| |||||||||||| ||||| | || |||||||||    
T  45490730 ttgacttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgaggatcttcatcatgcagtcaaatagagagc 45490822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 203
Target Start/End: Original strand, 37999079 - 37999249
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaa-cctcttgatatt 132  Q
    ||||||||  |||| |||||||| |||||| |||||||||||||||||||||| |||    |||||| | |||| ||||||||| || ||||||||||||    
T  37999079 tttcaagaggatttatttgagttcgatcctgctgccttgccaaatgacatattcatctggcaggcagaaggatcgaactcatagaaatcctcttgatatt 37999178  T
Q  133 tttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatctt 203  Q
    ||||||||| |||| ||  ||||||||| ||| ||||| |||||||||||||| | |||| ||||||||||    
T  37999179 tttgagttaactatgtatgaaggaggcatcaaagagtatctatatatttttgacaacatgctgaggatctt 37999249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 109111 - 109234
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    |||||||| ||||||||| ||||||||| | ||  |||||||||||||||||| |||    |||||||||||||||||||||| ||||||||||||||||    
T  109111 tttcaagagaatttctttaagttagatcatgctatcttgccaaatgacatattcatctagcaggcagcaagatctaactcataacaacctcttgatattt 109210  T
Q  134 ttgagttatctatctaacaaggag 157  Q
    ||||||||| ||| || |||||||    
T  109211 ttgagttatatatgtatcaaggag 109234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 43748905 - 43748792
Alignment:
Q  48 atttctttgagttagatcctactgccttgccaaatgacatatttat----caggcagcaagatctaactcatagcaacctcttgatatttttgagttatc 143  Q
    |||||||||||||||||| |  ||||||||||||||||||||| ||    ||| || || ||||||||||||||||||||||||||||||||||||||||    
T  43748905 atttctttgagttagatcatgttgccttgccaaatgacatattcatttgacagacaacaggatctaactcatagcaacctcttgatatttttgagttatc 43748806  T
Q  144 tatctaacaaggag 157  Q
    ||| || |||||||    
T  43748805 tatgtatcaaggag 43748792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 1852682 - 1852745
Alignment:
Q  173 tatatatttttgaaagcatgttgaggatcttcaccatgctggcacatagagagcaatctatttg 236  Q
    ||||||||||||| |||||||||| |||||||| ||||| | || |||||||||||||||||||    
T  1852682 tatatatttttgacagcatgttgaagatcttcatcatgcagtcaaatagagagcaatctatttg 1852745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 26187855 - 26187799
Alignment:
Q  35 gtgtttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatattt 91  Q
    |||||||||||  |||  ||||||||||||||| |||||||||||| ||| ||||||    
T  26187855 gtgtttcaagatgattgttttgagttagatcctgctgccttgccaactgagatattt 26187799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 94 - 298
Target Start/End: Original strand, 18876578 - 18876782
Alignment:
Q  94 caggcagcaagatctaactcatagcaacctcttgatatttttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgt 193  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||     
T  18876578 caggcatcaagatctaactcatagcaacctcttgatatttttgagttatctatctatcaaggaggcaacaaggagtatctatatatttttgaaagcatgc 18876677  T
Q  194 tgaggatcttcaccatgctggcacatagagagcaatctatttgtcacatagaccgccatctattttgcggcagcatgacaaagatactcagcacaatgac 293  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||   | ||||||||||||||||||||||||||||  |||||||||||||    
T  18876678 tgaggatcttcaccatgctggcacatagagagaaatctatctgtcacatagagatcaatctattttgcggcagcatgacaaagatcatcagcacaatgac 18876777  T
Q  294 aaaaa 298  Q
    |||||    
T  18876778 aaaaa 18876782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 35 - 301
Target Start/End: Original strand, 53394332 - 53394606
Alignment:
Q  35 gtgtttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgata 130  Q
    |||||||||||  |||| |||||||| |||| |  |  |||||||||||||||||| |||    |||||||||||||||||||||| |||||||||||||    
T  53394332 gtgtttcaagaggatttttttgagtttgatcatgttatcttgccaaatgacatattcatctggcaggcagcaagatctaactcataacaacctcttgata 53394431  T
Q  131 tttttgagttatctatctaac----aaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctggcacatagagagc 226  Q
    |||||||||||||||| || |    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  53394432 tttttgagttatctatatatctattaaggaggcaacaaggagtatctatatatttttaaaagcatgttgaggatcttcaccatgctggcacatagtgagc 53394531  T
Q  227 aatctatttgtcacatagaccgccatctattttgcggcagcatgacaaagatactcagcacaatgacaaaaaatt 301  Q
    |||||||||||||||||||  |  ||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  53394532 aatctatttgtcacatagagagaaatctattttgcggcagcatgacaaagatcttcagcacaatgacaaaaaatt 53394606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 38 - 213
Target Start/End: Original strand, 9127441 - 9127620
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| | |||||||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||    
T  9127441 tttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggtaggcagcaagatctaactcatagcaacctcttgatattt 9127540  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctg 213  Q
    |||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||| ||||| |||||| |||||||    
T  9127541 ttgagttatctatctatcaaggaggcatcaaggagtatctatatatttttgacagcatgatgaggttcttcatcatgctg 9127620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 38 - 213
Target Start/End: Original strand, 9135548 - 9135727
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| | |||||||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||    
T  9135548 tttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggtaggcagcaagatctaactcatagcaacctcttgatattt 9135647  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctg 213  Q
    |||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||| ||||| |||||| |||||||    
T  9135648 ttgagttatctatctatcaaggaggcatcaaggagtatctatatatttttgacagcatgatgaggttcttcatcatgctg 9135727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 21979547 - 21979406
Alignment:
Q  94 caggcagcaagatctaactcatagcaacctcttgatatttttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgt 193  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||     
T  21979547 caggcagcaagatataactcataacaacctcttgatatttttaagttatctatctatcaaggaggcagcaatgagtatctatatatttttgaaagcatga 21979448  T
Q  194 tgaggatcttcaccatgctggcacatagagagcaatctattt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  21979447 tgaggatcttcaccatgctggcacatagagagcaatctattt 21979406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 22001978 - 22001837
Alignment:
Q  94 caggcagcaagatctaactcatagcaacctcttgatatttttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgt 193  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||     
T  22001978 caggcagcaagatataactcataacaacctcttgatatttttaagttatctatctatcaaggaggcagcaatgagtatctatatatttttgaaagcatga 22001879  T
Q  194 tgaggatcttcaccatgctggcacatagagagcaatctattt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22001878 tgaggatcttcaccatgctggcacatagagagcaatctattt 22001837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 41974292 - 41974116
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcaggcag----caagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| | |||||||||||||||||||||| ||| |||||    |||||||||||||||||||||||||||||||||    
T  41974292 tttcaagaggatttctttgagttagatcttgctgccttgccaaatgacatattcatctggcagacagcaagatctaactcatagcaacctcttgatattt 41974193  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatg 210  Q
    ||||||||||| | || |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||    
T  41974192 ttgagttatctctgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgttgaggatcttcatcatg 41974116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 38 - 212
Target Start/End: Complemental strand, 49327039 - 49326861
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcaggcag----caagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||  | |||||||||||||||||||||| ||| |||||    |||||||||||||||||||||||||||||||||    
T  49327039 tttcaagaggatttctttgagttagatgttgctgccttgccaaatgacatattcatctggcagacagcaagatctaactcatagcaacctcttgatattt 49326940  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgct 212  Q
    ||||||||||| | || |||||||||| ||||||||| |||||||||||||| | |||| |||||||||||| ||||||    
T  49326939 ttgagttatctgtgtatcaaggaggcatcaaggagtatctatatatttttgacaacatgatgaggatcttcatcatgct 49326861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 8486231 - 8486052
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||||| || ||||||||||||||||||| |||    | ||||||| ||||||||||||| ||||| |||||||||    
T  8486231 tttcaagaggatttctttgagttagatcctgctaccttgccaaatgacatattcatctagcatgcagcaaaatctaactcatagtaaccttttgatattt 8486132  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctg 213  Q
    ||||||||||||| || |||||||||| ||||||||| |||||||||||||| | |||| | |||||||||| |||||||    
T  8486131 ttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacatcatgcttaggatcttcatcatgctg 8486052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 38 - 203
Target Start/End: Original strand, 16483268 - 16483436
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||| ||||||||| |||||||| ||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||    
T  16483268 tttcaagaggatttctttgacttagatcctgctgccttgtcaaatgacatattcatcttgcaggcagcaagatctaactcatagcaacctcttgatattt 16483367  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatctt 203  Q
    |||||||||   |||| ||||||| || ||||||||| |||||||||||||| |||||| ||||||||||    
T  16483368 ttgagttat-agtctatcaaggagacatcaaggagtatctatatatttttgacagcatgctgaggatctt 16483436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 38 - 210
Target Start/End: Original strand, 30389327 - 30389504
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  ||||||||||||| |||| | |||||||||||||||||||||| |||    |||||| | |||| ||||||||| |||||||||||||||    
T  30389327 tttcaagaggatttctttgagttcgatcttgctgccttgccaaatgacatattcatctggtaggcagaaggatcgaactcatagaaacctcttgatattt 30389426  T
Q  134 ttgagtta-tctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatg 210  Q
    |||||||| ||||| || |||||||||| ||||||||| |||||||||||||| |||||| |||||||||||| ||||    
T  30389427 ttgagttaatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgaggatcttcatcatg 30389504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 47374490 - 47374313
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcagg----cagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| |  ||||||||||||||||||||| ||| ||    |||||| |||||||||||||||||||||| ||||||    
T  47374490 tttcaagaggatttctttgagttagatcatgttgccttgccaaatgacatattcatctggtagacagcaatatctaactcatagcaacctcttaatattt 47374391  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgc 211  Q
    ||||||||||| |||| ||||||||||  || ||||| |||||||||||||| |||||||||| ||| |||| |||||    
T  47374390 ttgagttatctctctatcaaggaggcattaaagagtatctatatatttttgacagcatgttgatgatattcatcatgc 47374313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 38 - 213
Target Start/End: Original strand, 48062596 - 48062775
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcaggcag----caagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| |  || |||||||||||||||||| ||| |||||    |||||||||||| ||| ||||||||||||||||    
T  48062596 tttcaagaggatttctttgagttagatcttgttgtcttgccaaatgacatattcatctggcagacagcaagatctaacttataacaacctcttgatattt 48062695  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctg 213  Q
    ||||||||||| | || |||||||||| ||| ||||| |||||||||||||| |||||| ||| |||||||| |||||||    
T  48062696 ttgagttatctgtgtatcaaggaggcatcaaagagtatctatatatttttgacagcatgctgatgatcttcatcatgctg 48062775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 21979426 - 21979363
Alignment:
Q  238 cacatagaccgccatctattttgcggcagcatgacaaagatactcagcacaatgacaaaaaatt 301  Q
    ||||||||  || ||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  21979426 cacatagagagcaatctattttgcggcagcatcacaaagatcctcagcacaatgacaaaaaatt 21979363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 22001857 - 22001794
Alignment:
Q  238 cacatagaccgccatctattttgcggcagcatgacaaagatactcagcacaatgacaaaaaatt 301  Q
    ||||||||  || ||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  22001857 cacatagagagcaatctattttgcggcagcatcacaaagatcctcagcacaatgacaaaaaatt 22001794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 44207308 - 44207211
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttat----caggcagcaagatctaactcatagcaacctcttgatat 131  Q
    ||||||||  ||||||||||||| |||| | ||||||||||||||||| |||| ||    ||||||| | |||| ||||||||| |||||||||||||    
T  44207308 tttcaagaggatttctttgagttcgatcatgctgccttgccaaatgacttattcatctgacaggcagaaggatcgaactcatagaaacctcttgatat 44207211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 27024809 - 27024911
Alignment:
Q  35 gtgtttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttat-----caggcagcaagatctaactcatagcaacctcttgat 129  Q
    |||||||||||  |||  ||||||||||||||| |||||||||||| ||| ||||||||      ||| ||||||||||| ||||| ||||||||||| |    
T  27024809 gtgtttcaagaggattattttgagttagatcctgctgccttgccaactgagatatttatatgccaaggaagcaagatctagctcatggcaacctcttggt 27024908  T
Q  130 att 132  Q
    |||    
T  27024909 att 27024911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 30389600 - 30389649
Alignment:
Q  177 tatttttgaaagcatgttgaggatcttcaccatgctggcacatagagagc 226  Q
    ||||||||| ||||||||||||||||||| ||||| | || |||||||||    
T  30389600 tatttttgacagcatgttgaggatcttcatcatgcagtcaaatagagagc 30389649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 16483538 - 16483586
Alignment:
Q  177 tatttttgaaagcatgttgaggatcttcaccatgctggcacatagagag 225  Q
    ||||||||| ||||||||||||||||||| ||||| | || ||||||||    
T  16483538 tatttttgacagcatgttgaggatcttcatcatgcagtcaaatagagag 16483586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 38 - 225
Target Start/End: Complemental strand, 5343464 - 5343273
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| | |||||||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||    
T  5343464 tttcaagaggatttctttgagttagatcttgctgccttgccaaatgacatattcatctggcaggcagcaagatctaactcatagcaacctcttgatattt 5343365  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctggcacatagagag 225  Q
    ||| ||||||||| || |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||| | || ||||||||    
T  5343364 ttgtgttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgttgaggatcttcatcatgcagtcaaatagagag 5343273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 38 - 211
Target Start/End: Original strand, 32747254 - 32747431
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcaggcag----caagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| | |||||||||||||||||||||| ||| |||||    |||||||||||||||||||||||||||||||||    
T  32747254 tttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggcaggcaacaagatctaactcatagcaacctcttgatattt 32747353  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgc 211  Q
    |||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||| |||||||||||| |||||    
T  32747354 ttgagttatctatctatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgaggatcttcatcatgc 32747431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 6432135 - 6431959
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||| |||    ||||||||  |||||||||||||||||||||||||||||    
T  6432135 tttcaagaggatttctttgagttagatcctgctgccttgccaaatgacatattcatctggcaggcagcacaatctaactcatagcaacctcttgatattt 6432036  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatg 210  Q
    ||||||||||||| || |||||||||| |||||||||  ||||||||||||| ||||||||||||||||||| ||||    
T  6432035 ttgagttatctatgtatcaaggaggcatcaaggagtatatatatatttttgacagcatgttgaggatcttcatcatg 6431959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 1710121 - 1709944
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||||| ||| |||||||||||||||||| |||    |||||||| ||||||||||| ||||||||||| ||||||    
T  1710121 tttcaagaggatttctttgagttagatcctgctgtcttgccaaatgacatattcatctggcaggcagcacgatctaactcaaagcaacctcttaatattt 1710022  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgc 211  Q
    |||||||||||||||| ||||||| || ||||||||| |||||||||||||| | ||||| ||||||||||| |||||    
T  1710021 ttgagttatctatctaccaaggagacatcaaggagtatctatatatttttgacatcatgtggaggatcttcatcatgc 1709944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 38 - 157
Target Start/End: Complemental strand, 24855638 - 24855515
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||| |||||| ||||||||||||| |||||||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||    
T  24855638 tttcaagaagatttctgtgagttagatcctgctgccttgccaaatgacatattcatctggtaggcagcaagatctaactcatagcaacctcttgatattt 24855539  T
Q  134 ttgagttatctatctaacaaggag 157  Q
    ||||||||||||| || |||||||    
T  24855538 ttgagttatctatgtatcaaggag 24855515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 4102023 - 4102085
Alignment:
Q  173 tatatatttttgaaagcatgttgaggatcttcaccatgctggcacatagagagcaatctattt 235  Q
    |||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  4102023 tatatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctattt 4102085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 27949120 - 27949218
Alignment:
Q  35 gtgtttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttat----caggcagcaagatctaactcatagcaacctcttgat 129  Q
    |||||||||||  |||||||||||||||||| | || ||||| |||||||| |||| ||    |||| ||||||||||||||||||| |||||||||||    
T  27949120 gtgtttcaagaggatttctttgagttagatcatgcttccttgtcaaatgacttattcatctggcaggaagcaagatctaactcatagaaacctcttgat 27949218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 41615863 - 41615775
Alignment:
Q  48 atttctttgagttagatcctactgccttgccaaatgacatatttatcagg----cagcaagatctaactcatagcaacctcttgatatt 132  Q
    |||||| |||| |||||| | |||||||||||||||||||||| ||| ||    |||||||||||| ||||||| ||||||||||||||    
T  41615863 atttctctgagctagatcttgctgccttgccaaatgacatattcatctggcaaacagcaagatctagctcatagaaacctcttgatatt 41615775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 27689983 - 27689949
Alignment:
Q  95 aggcagcaagatctaactcatagcaacctcttgat 129  Q
    |||||||||||||||||||||||||||||||||||    
T  27689983 aggcagcaagatctaactcatagcaacctcttgat 27689949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 4102065 - 4102125
Alignment:
Q  238 cacatagaccgccatctattttgcggcagcatgacaaagatactcagcacaatgacaaaaa 298  Q
    ||||||||  || |||||||||||||||| ||||||||||| || | ||||||||||||||    
T  4102065 cacatagagagcaatctattttgcggcagtatgacaaagatccttaacacaatgacaaaaa 4102125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 25724079 - 25723981
Alignment:
Q  35 gtgtttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttat------caggcagcaagatctaactcatagcaacctcttg 127  Q
    |||||||||||  |||  ||||||||||||| | |||||||||||| ||||||||||||       | ||| ||||||||| |||||||||||||||||    
T  25724079 gtgtttcaagaggattgttttgagttagatcttgctgccttgccaactgacatatttatattgccaaagcaacaagatctagctcatagcaacctcttg 25723981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 23344370 - 23344333
Alignment:
Q  95 aggcagcaagatctaactcatagcaacctcttgatatt 132  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  23344370 aggcagcaagatctagctcatagcaacctcttggtatt 23344333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 28334916 - 28334949
Alignment:
Q  99 agcaagatctaactcatagcaacctcttgatatt 132  Q
    ||||||||||||||||||||||||||||| ||||    
T  28334916 agcaagatctaactcatagcaacctcttggtatt 28334949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 32747528 - 32747576
Alignment:
Q  177 tatttttgaaagcatgttgaggatcttcaccatgctggcacatagagag 225  Q
    ||||||||| ||||||||||||||||||| ||||| | || ||||||||    
T  32747528 tatttttgacagcatgttgaggatcttcatcatgcagtcaaatagagag 32747576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 38990387 - 38990208
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||    ||||||||||||| |||||||| ||||||||||||||||    
T  38990387 tttcaagaggatttctttgagttagatcctactgccttgccaaatgacatattcatctggcaggcagcaagatcaaactcataacaacctcttgatattt 38990288  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctg 213  Q
    ||||||||||||| || |||||||||| ||||||||| |||||||||||||| |||||| |||||||||||| |||||||    
T  38990287 ttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgaggatcttcatcatgctg 38990208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 52919176 - 52919000
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||| |||    |||||||| ||||||||||||||||||||||||||||||    
T  52919176 tttcaagaggatttctttgagttagatcctgctgccttgccaaatgacatattcatctggcaggcagcacgatctaactcatagcaacctcttgatattt 52919077  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatg 210  Q
    ||||||||||||| || |||||||||| |||||| || |||||||||||||| |||||| |||| ||||||| ||||    
T  52919076 ttgagttatctatgtatcaaggaggcatcaaggactatctatatatttttgacagcatgctgagaatcttcatcatg 52919000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 38 - 213
Target Start/End: Original strand, 47604180 - 47604358
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcaggcag----caagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||| ||| |||||    |||||||||||||||| ||||||||||||||||    
T  47604180 tttcaagaggatttctttgagttagatcctgctgccttgccaaatgacatattcatctggcagacagcaagatctaactcatatcaacctcttgatattt 47604279  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctg 213  Q
    ||||||||||| | || |||||||||| ||||||||| ||| |||||||||| ||||||||||||||||||| |||||||    
T  47604280 ttgagttatctctgtatcaaggaggcatcaaggagtatcta-atatttttgacagcatgttgaggatcttcatcatgctg 47604358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 210
Target Start/End: Original strand, 53269801 - 53269967
Alignment:
Q  48 atttctttgagttagatcctactgccttgccaaatgacatatttatcaggcag----caagatctaactcatagcaacctcttgatatttttgagttatc 143  Q
    |||||||||||||||||| | |||||||||||||| ||||||| ||| |||||    || ||||||||||||||||||||||||||||||||||||||||    
T  53269801 atttctttgagttagatcatgctgccttgccaaataacatattcatctggcagacagcacgatctaactcatagcaacctcttgatatttttgagttatc 53269900  T
Q  144 tatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatg 210  Q
    ||| || |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||    
T  53269901 tatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgttgaggatcttcatcatg 53269967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 40762080 - 40761903
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  ||||||||||||||||||    ||||||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||    
T  40762080 tttcaagaggatttctttgagttagatcaagttgccttgccaaatgacatattcatctgacaggcagcaagatctaactcatagcaacctcttgatattt 40761981  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgc 211  Q
    ||||||||||||| || |||||||||| |||||||||  |||||||||| || |||||| |||||||||||| |||||    
T  40761980 ttgagttatctatgtatcaaggaggcatcaaggagtatttatatattttcgacagcatgctgaggatcttcatcatgc 40761903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 40692702 - 40692526
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  ||||||||||||| |||||| |||||||||||||||||||||| |||    |||||| | |||| ||||||||| || ||||||||||||    
T  40692702 tttcaagaggatttctttgagttcgatcctgctgccttgccaaatgacatattcatctggcaggcagaaggatcgaactcatagaaatctcttgatattt 40692603  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatg 210  Q
    ||||||||||||| || |||||||||| ||||||||| |||||||||||| | ||||||||||||||||||| ||||    
T  40692602 ttgagttatctatgtatcaaggaggcatcaaggagtatctatatattttttacagcatgttgaggatcttcatcatg 40692526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 55612108 - 55611940
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||| ||||||||| |||||||| ||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||    
T  55612108 tttcaagaggatttctttgacttagatcctgctgccttgtcaaatgacatattcatcttgcaggcagcaagatctaactcatagcaacctcttgatattt 55612009  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatctt 203  Q
    |||||||||   |||| ||||||| || ||||||||| |||||||||||||| |||||| ||||||||||    
T  55612008 ttgagttat-agtctatcaaggagacatcaaggagtatctatatatttttgacagcatgctgaggatctt 55611940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 45659249 - 45659070
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||| |||| |||||| ||| |||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||    
T  45659249 tttcaagaggatttctttaagttggatcctgctgtcttgccaaatgacatattcatctggcaggcagcaagatctaactcatagcaacctcttgatattt 45659150  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctg 213  Q
    || | |||| ||| || |||| ||||| ||||||||| |||||||||||||| |||||| ||| |||||||| |||||||    
T  45659149 tttacttatatatgtatcaagaaggcatcaaggagtatctatatatttttgacagcatgctgaagatcttcatcatgctg 45659070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 47985407 - 47985217
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttat----caggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  ||||||||||||| |||| | |||||||||||||||||||||| ||    ||| ||| | |||| ||||||||| |||||||||||||||    
T  47985407 tttcaagaggatttctttgagttcgatcttgctgccttgccaaatgacatattcatatggcagacagaaggatcgaactcatagaaacctcttgatattt 47985308  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctggcacatagaga 224  Q
    ||||||||||||| || |||||||||| ||| ||||| |||||||||||||| |||||||||||||| |||| |||| ||  |||||||||    
T  47985307 ttgagttatctatgtatcaaggaggcatcaaagagtatctatatatttttgacagcatgttgaggattttcatcatgttgttacatagaga 47985217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 48 - 213
Target Start/End: Original strand, 44108504 - 44108673
Alignment:
Q  48 atttctttgagttagatcctactgccttgccaaatgacatatttatcaggcagcaaga----tctaactcatagcaacctcttgatatttttgagttatc 143  Q
    ||||||||||||| |||| | |||||||||||||||||||||| ||| |||||  |||    || ||||||||| |||||||||||||||| ||||||||    
T  44108504 atttctttgagttcgatcatgctgccttgccaaatgacatattcatctggcagacagaaggatcgaactcatagaaacctcttgatattttagagttatc 44108603  T
Q  144 tatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctg 213  Q
    ||| || |||||||||| ||||||||| || ||||||||||| ||||||||||||||||||| |||||||    
T  44108604 tatgtatcaaggaggcatcaaggagtatctgtatatttttgatagcatgttgaggatcttcatcatgctg 44108673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 38 - 203
Target Start/End: Original strand, 53511938 - 53512107
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  ||||||||||||| |||| | || ||||||||||||||| ||| |||    |||||| | |||| ||||||||| |||||||||||||||    
T  53511938 tttcaagaggatttctttgagttcgatcatgctcccttgccaaatgacacattcatctggcaggcagaaggatcgaactcatagaaacctcttgatattt 53512037  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatctt 203  Q
    |||||||||||||  | ||||||| || |||||||||  ||||||||||||| |||||| ||||||||||    
T  53512038 ttgagttatctatgcatcaaggagacatcaaggagtatttatatatttttgacagcatgctgaggatctt 53512107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 277
Target Start/End: Original strand, 11648230 - 11648329
Alignment:
Q  175 tatatttttgaaagcatgttgaggatcttcaccatgctggcacatagagagcaatctatttgtcacatagaccgccatctattttgcggcagcatgacaa 274  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||   | |||||||||||||| | |||||||    
T  11648230 tatatttttgaaagcatattgaggatcttcaccatgctggcacata---agcaatctatttgtcacatagagatcaatctattttgcggccgtatgacaa 11648326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 11648121 - 11648223
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| |  || ||| | ||| |||||||| |||    ||| |||||||||||||||||||||||||||||||||||    
T  11648121 tttcaagaggatttctttgagttagatcatgttgtcttacaaaacgacatattcatctggaaggtagcaagatctaactcatagcaacctcttgatattt 11648220  T
Q  134 ttg 136  Q
    |||    
T  11648221 ttg 11648223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 13721762 - 13721823
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcaggca 99  Q
    ||||||||  ||||||||||||||||| || |||||||||||||||||||||| ||| ||||    
T  13721762 tttcaagaggatttctttgagttagattctgctgccttgccaaatgacatattcatctggca 13721823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 55611838 - 55611790
Alignment:
Q  177 tatttttgaaagcatgttgaggatcttcaccatgctggcacatagagag 225  Q
    ||||||||| ||||||||||||||||||| ||||| | || ||||||||    
T  55611838 tatttttgacagcatgttgaggatcttcatcatgcagtcaaatagagag 55611790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 38 - 211
Target Start/End: Original strand, 24831166 - 24831343
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| |||||||||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||    
T  24831166 tttcaagaggatttctttgagttagatcttactgccttgccaaatgacatattcatctggcaggcagcaagatctaactcatagcaacctcttgatattt 24831265  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgc 211  Q
    ||||||||||||| || |||||||||| |||| |||| |||||||||||||| |||||| |||||||||||| |||||    
T  24831266 ttgagttatctatgtatcaaggaggcatcaagcagtatctatatatttttgacagcatgatgaggatcttcatcatgc 24831343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 38 - 205
Target Start/End: Complemental strand, 11450 - 11279
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcaggcag----caagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||||| |||||||||||||| ||||||| ||| || ||    ||||||||||||||||||||||||||| |||||    
T  11450 tttcaagaggatttctttgagttagatcctgctgccttgccaaataacatattcatctggaagacaacaagatctaactcatagcaacctcttggtattt 11351  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttca 205  Q
    ||||||||||| | || |||||||||| ||||||||| |||||||| ||||| |||||| ||||||||||||    
T  11350 ttgagttatctgtgtatcaaggaggcatcaaggagtatctatatatgtttgacagcatgctgaggatcttca 11279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 277
Target Start/End: Original strand, 41835219 - 41835318
Alignment:
Q  175 tatatttttgaaagcatgttgaggatcttcaccatgctggcacatagagagcaatctatttgtcacatagaccgccatctattttgcggcagcatgacaa 274  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||   | |||||||||||||| | |||||||    
T  41835219 tatatttttgaaagcatattgaggatcttcaccatgctggcacata---agcaatctatttgtcacatagagatcaatctattttgcggccgtatgacaa 41835315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 41835110 - 41835212
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| |  || ||| | ||| |||||||| |||    ||| |||||||||||||||||||||||||||||||||||    
T  41835110 tttcaagaggatttctttgagttagatcatgttgtcttacaaaacgacatattcatctggaaggtagcaagatctaactcatagcaacctcttgatattt 41835209  T
Q  134 ttg 136  Q
    |||    
T  41835210 ttg 41835212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 11457554 - 11457617
Alignment:
Q  173 tatatatttttgaaagcatgttgaggatcttcaccatgctggcacatagagagcaatctatttg 236  Q
    ||||||||||||| || ||| ||| |||||||| || |||| || |||||||||||||||||||    
T  11457554 tatatatttttgacaggatgctgaagatcttcatcacgctgtcaaatagagagcaatctatttg 11457617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 38 - 205
Target Start/End: Complemental strand, 5749633 - 5749462
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||||| |||||||| ||||||||||||| |||    ||| |||||||||||||||||| ||||||||||||||||    
T  5749633 tttcaagaggatttctttgagttagatcctgctgccttgtcaaatgacatattcatctaacaggtagcaagatctaactcataacaacctcttgatattt 5749534  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttca 205  Q
    ||||||||||||| || |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  5749533 ttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgatagcatgttgaggatcttca 5749462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 12524632 - 12524456
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||||| ||| |||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||    
T  12524632 tttcaagaggatttctttgagttagatcctgctgtcttgccaaatgacatattcatctggcaggcagcaagatctaactcatagcaacctcttgatattt 12524533  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatg 210  Q
    ||||||||||||| || |||||||||| |||| |||| |||||||||||||| | |||| |||||||||||| ||||    
T  12524532 ttgagttatctatgtatcaaggaggcatcaagcagtatctatatatttttgacaacatgctgaggatcttcatcatg 12524456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 38 - 205
Target Start/End: Complemental strand, 10222941 - 10222770
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcag----gcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| | |||||||||||||||||||||| ||| |    ||||||||||||||||||||||||||||||||| |||    
T  10222941 tttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctgacatgcagcaagatctaactcatagcaacctcttgattttt 10222842  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttca 205  Q
    ||||||||||||| || |||||||||| |||| |||| |||||||||||||| |||||||||||||||||||    
T  10222841 ttgagttatctatgtatcaaggaggcatcaagaagtatctatatatttttgacagcatgttgaggatcttca 10222770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 6605339 - 6605170
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcaggcagcaag----atctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||| ||| |||||  ||    |||||||||||||||||||||||||||||    
T  6605339 tttcaagaggatttctttgagttagatcctgctgccttgccaaatgacatattcatctggcagtcagcattatctaactcatagcaacctcttgatattt 6605240  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatctt 203  Q
    |||||||||| ||||| |||||||||| ||||||||| |||||||||||||| | |||||||||||||||    
T  6605239 ttgagttatccatctatcaaggaggcatcaaggagtatctatatatttttgacaacatgttgaggatctt 6605170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 38 - 211
Target Start/End: Original strand, 14270868 - 14271045
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||| ||||  ||||| || ||||||||||||||||||| |||    |||||| | |||| ||||||||| |||||||||||||||    
T  14270868 tttcaagaggatttctttaagttctatcctgctaccttgccaaatgacatattcatctggcaggcagaaggatcgaactcatagaaacctcttgatattt 14270967  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgc 211  Q
    ||||||||||||| || |||||||||| ||||||||| |||||||||||||| |||||| |||||||||||| |||||    
T  14270968 ttgagttatctatatatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgaggatcttcatcatgc 14271045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 3474989 - 3474812
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcaggcag----caagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| |  ||||||| |||||||| |||||||| | |||    ||||||||||||||||||||| |||| ||||||    
T  3474989 tttcaagatgatttctttgagttagatcatgttgccttgtcaaatgacttatttatctgacagacaacaagatctaactcatagcaacatcttaatattt 3474890  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgc 211  Q
    ||||||||||| |||| |||||||||| ||| || || |||||||||||||| |||||| |||||||||||| |||||    
T  3474889 ttgagttatctctctatcaaggaggcatcaatgaatatctatatatttttgacagcatgctgaggatcttcatcatgc 3474812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 38 - 213
Target Start/End: Original strand, 39598621 - 39598800
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcaggca----gcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||| ||||| |||||||||||||||| ||||| ||| ||||    |||| || |||||||||| |||||||||||||||    
T  39598621 tttcaagaggatttctttgagttatatcctgctgccttgccaaatgatatattcatctggcaagcagcaaaatttaactcatagtaacctcttgatattt 39598720  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctg 213  Q
    ||||||||||| | || |||||||||| ||||||||| |||||||||||||| | |||| ||| |||||| | |||||||    
T  39598721 ttgagttatctctgtatcaaggaggcatcaaggagtatctatatatttttgacaacatgctgatgatcttaatcatgctg 39598800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 158
Target Start/End: Original strand, 21191328 - 21191452
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcaggcag----caagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||| |||| |||||||| | |||||||||||||||||||||| ||| |||||    |||||||||||||||||||||||||||||||||    
T  21191328 tttcaagaggatttatttgcgttagatcatgctgccttgccaaatgacatattcatctggcaggtagcaagatctaactcatagcaacctcttgatattt 21191427  T
Q  134 ttgagttatctatctaacaaggagg 158  Q
    || ||||||||||||| ||||||||    
T  21191428 tttagttatctatctatcaaggagg 21191452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 157
Target Start/End: Complemental strand, 10312898 - 10312775
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcaggcag----caagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  ||||||||||| |||||||| ||| ||||||| |||||||||| ||| |||||    |||||||||||||||||||||||||||||||||    
T  10312898 tttcaagaggatttctttgagctagatcctgctgacttgccacatgacatattcatctggcagacatcaagatctaactcatagcaacctcttgatattt 10312799  T
Q  134 ttgagttatctatctaacaaggag 157  Q
    ||||||||||| | || |||||||    
T  10312798 ttgagttatctgtgtatcaaggag 10312775  T

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Target: chr1; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 4851748 - 4851869
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttat----caggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| | |||||||||||||||||||||| ||    |||||| |||||||||||||||| ||||||||||||| ||    
T  4851748 tttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggcaggcaacaagatctaactcataacaacctcttgata-tt 4851846  T
Q  134 ttgagttatctatctaacaagga 156  Q
    ||||||||||||| || ||||||    
T  4851847 ttgagttatctatgtatcaagga 4851869  T

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Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 7199136 - 7199028
Alignment:
Q  104 gatctaactcatagcaacctcttgatatttttgagttatctatctaacaaggaggcaacaaggag--taactatatatttttgaaagcatgttgaggatc 201  Q
    ||||||||||||| ||||||||||||||||||||||||| | | || |||||||||| |||||||  ||  ||||||||||||| | ||||  |||||||    
T  7199136 gatctaactcataacaacctcttgatatttttgagttatatgtgtatcaaggaggcatcaaggagtatatatatatatttttgacaacatggcgaggatc 7199037  T
Q  202 ttcaccatg 210  Q
    |||| ||||    
T  7199036 ttcatcatg 7199028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 29251223 - 29251321
Alignment:
Q  35 gtgtttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttat----caggcagcaagatctaactcatagcaacctcttgat 129  Q
    |||||||||||  |||||||||||||||||||  || |||||||||||||| |||| ||    ||| || ||||||||||||||||| |||||||||||    
T  29251223 gtgtttcaagaggatttctttgagttagatcccgctaccttgccaaatgacttattcatttggcagacaacaagatctaactcatagaaacctcttgat 29251321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 7564282 - 7564217
Alignment:
Q  35 gtgtttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcaggcag 100  Q
    |||||||||||  |||||| |||  |||||||| |||||||||||||||||||||| ||| |||||    
T  7564282 gtgtttcaagaggatttctctgatctagatcctgctgccttgccaaatgacatattcatctggcag 7564217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 30517908 - 30517870
Alignment:
Q  94 caggcagcaagatctaactcatagcaacctcttgatatt 132  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  30517908 caggcagcaagaactaactcatagaaacctcttgatatt 30517870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 21535435 - 21535379
Alignment:
Q  35 gtgtttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatattt 91  Q
    |||||||||||  |||  ||||||||||||||| |||||||||||| ||| ||||||    
T  21535435 gtgtttcaagaggattgttttgagttagatcctgctgccttgccaagtgagatattt 21535379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 99 - 235
Target Start/End: Complemental strand, 3514185 - 3514050
Alignment:
Q  99 agcaagatctaactcatagcaacctcttgatatttttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgagg 198  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| ||| ||||||||| ||||||||||||||||||||| | | |    
T  3514185 agcaagatctaactcatagcaacctcttgatatttttgagt-atctatctatcgaggatgcagcaaggagtatctatatatttttgaaagcatgctaaag 3514087  T
Q  199 atcttcaccatgctggcacatagagagcaatctattt 235  Q
    |||||||||||||||||||||||||||||||||||||    
T  3514086 atcttcaccatgctggcacatagagagcaatctattt 3514050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 38 - 210
Target Start/End: Original strand, 13037299 - 13037475
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  ||||||||||||| || |||  ||||||||||||||||||||| |||    |||||||||||||||||||||| ||||||||||||||||    
T  13037299 tttcaagaggatttctttgagtttgagcctgttgccttgccaaatgacatattcatctggcaggcagcaagatctaactcatatcaacctcttgatattt 13037398  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatg 210  Q
    ||||||||||||| || |||||||||| ||||||||| |||||||||||||| |||| | |||||||||||| ||||    
T  13037399 ttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcaagctgaggatcttcatcatg 13037475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 38 - 178
Target Start/End: Original strand, 480727 - 480871
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatcaggcag----caagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||||||| | |||||||||||||||||||||| ||| |||||    | |||||||||||||||||||||||| ||||||    
T  480727 tttcaagaggatttctttgagttagatcttgctgccttgccaaatgacatattcatctggcagacagccagatctaactcatagcaacctctttatattt 480826  T
Q  134 ttgagttatctatctaacaaggaggcaacaaggagtaactatata 178  Q
    ||||||||||| | || |||||||||| ||||||||| |||||||    
T  480827 ttgagttatctgtatatcaaggaggcatcaaggagtatctatata 480871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 12304844 - 12304746
Alignment:
Q  35 gtgtttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttat----caggcagcaagatctaactcatagcaacctcttgat 129  Q
    |||||||||||  |||||||||||||||||| |  ||||||| |||||||| |||| ||    |||| ||||||||||||||||||| |||||||||||    
T  12304844 gtgtttcaagaggatttctttgagttagatcatgttgccttgacaaatgacttattcatctggcaggaagcaagatctaactcatagaaacctcttgat 12304746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 3514070 - 3514007
Alignment:
Q  238 cacatagaccgccatctattttgcggcagcatgacaaagatactcagcacaatgacaaaaaatt 301  Q
    ||||||||  || ||||||||| || ||||||||||||||| ||||||||||||||||||||||    
T  3514070 cacatagagagcaatctattttacgacagcatgacaaagatcctcagcacaatgacaaaaaatt 3514007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 20819108 - 20819140
Alignment:
Q  95 aggcagcaagatctaactcatagcaacctcttg 127  Q
    ||||| |||||||||||||||||||||||||||    
T  20819108 aggcaccaagatctaactcatagcaacctcttg 20819140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 12575 - 12686
Alignment:
Q  38 tttcaagaaaatttctttgagttagatcctactgccttgccaaatgacatatttatc----aggcagcaagatctaactcatagcaacctcttgatattt 133  Q
    ||||||||  |||||||||||||  ||||| |||||||||||||||||||||| |||    |||||| | |||| ||||||||| |||||||||||||||    
T  12575 tttcaagaggatttctttgagttccatcctgctgccttgccaaatgacatattcatctagcaggcagaaggatcgaactcatagaaacctcttgatattt 12674  T
Q  134 ttgagttatcta 145  Q
    ||||||||||||    
T  12675 ttgagttatcta 12686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 16100 - 16175
Alignment:
Q  138 gttatctatctaacaaggaggcaacaaggagtaactatatatttttgaaagcatgttgaggatcttcaccatgctg 213  Q
    ||||||||| |  |||||||||| ||||||||| |||||||||||||| | |||| |||||| ||||| |||||||    
T  16100 gttatctatgtgtcaaggaggcatcaaggagtatctatatatttttgacaacatgctgaggaacttcatcatgctg 16175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 62465 - 62415
Alignment:
Q  251 atctattttgcggcagcatgacaaagatactcagcacaatgacaaaaaatt 301  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  62465 atctattttgcggcagcatgacaaagattctcagcacaatgacaaaaaatt 62415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 62521 - 62458
Alignment:
Q  172 ctatatatttttgaaagcatgttgaggatcttcaccatgctggcacatagagagcaatctattt 235  Q
    |||||||||||| ||||||||||||||||||||| || |||| | |||||||||||||||||||    
T  62521 ctatatattttttaaagcatgttgaggatcttcatcacgctgtcgcatagagagcaatctattt 62458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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