View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7419_high_2 (Length: 251)
Name: NF7419_high_2
Description: NF7419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7419_high_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 5613441 - 5613200
Alignment:
| Q |
1 |
ccttttccaacatctatcttccagctccgttcactttctttcctttctctttcctataataggttgaatgggtcactacaactagatgagcttttgaagc |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5613441 |
ccttttccaacatctatcttccaactccgttcactttctatcctccatctttcctctaataggttgaatgggtcactacaactagatgagcttttgaagc |
5613342 |
T |
|
| Q |
101 |
ttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttgccaattttgaatatct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5613341 |
ttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttcccaattttgaatatct |
5613242 |
T |
|
| Q |
201 |
tcatttggcatcctgcaacctgaaaacttttcctatattctt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5613241 |
tcatttggcatcctgcaacctgaaaacttttcctatattctt |
5613200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 5895415 - 5895656
Alignment:
| Q |
1 |
ccttttccaacatctatcttccagctccgttcactttctttcctttctctttcctataataggttgaatgggtcactacaactagatgagcttttgaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5895415 |
ccttttccaacatctatcttccagctccgttcactttctttcctctatctttcctctaataggttgaatgggtcactacaactagatgagcttttgaagc |
5895514 |
T |
|
| Q |
101 |
ttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttgccaattttgaatatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| |
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|
| T |
5895515 |
ttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgaccagactgcctttcccaattttgaacttct |
5895614 |
T |
|
| Q |
201 |
tcatttggcatcctgcaacctgaaaacttttcctatattctt |
242 |
Q |
| |
|
| |||| ||||||||||| |||||||||| |||| |||||| |
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|
| T |
5895615 |
ttatttatcatcctgcaacttgaaaactttccctagattctt |
5895656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 5886570 - 5886811
Alignment:
| Q |
1 |
ccttttccaacatctatcttccagctccgttcactttctttcctttctctttcctataataggttgaatgggtcactacaactagatgagcttttgaagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||| | ||||||||| | || || | ||||||||||||||||| |
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| T |
5886570 |
ccttttccaacatctatcttccagctcaattcactttctgtcctcagtctttcctctaacaagttgaatggattgcttcagcaagatgagcttttgaagc |
5886669 |
T |
|
| Q |
101 |
ttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttgccaattttgaatatct |
200 |
Q |
| |
|
|||| |||||| | || ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||| ||||||||||| ||| |
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|
| T |
5886670 |
ttagaaatttacatagtttacacctttcatacaacaacatatcaatcattgagaatgatgcaaatgctgatcagacaacctttcccaattttgaacgtct |
5886769 |
T |
|
| Q |
201 |
tcatttggcatcctgcaacctgaaaacttttcctatattctt |
242 |
Q |
| |
|
| |||||||||||||||| |||||||||| |||| |||||| |
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|
| T |
5886770 |
ttttttggcatcctgcaacttgaaaactttccctagattctt |
5886811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 5539631 - 5539864
Alignment:
| Q |
2 |
cttttccaacatctatcttccagctccgttcactttctttcctttctctttcctataataggttgaatgggtcactacaactagatgagcttttgaagct |
101 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||| |||||||| ||| ||||||||||| | || || ||||||||||||||||||| |
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|
| T |
5539631 |
cttttccaacatctatcttccagcttcgttcactttctgtcctcgatctttcctttaacaggttgaatggattgctgcagttagatgagcttttgaagct |
5539730 |
T |
|
| Q |
102 |
tagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttgccaattttgaata-tct |
200 |
Q |
| |
|
|| |||||| | |||||||||||||||||||||||||||||| |||| ||||| || |||||||||||| ||| ||||| ||||| || | || ||| |
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|
| T |
5539731 |
aagaaatttaactgcactagacctttcatacaacaacatatcaatcaatgtgaatgttgaaaatgctgatcatacttccttttccaatatt-agtactct |
5539829 |
T |
|
| Q |
201 |
tcatttggcatcctgcaacctgaaaacttttccta |
235 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
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|
| T |
5539830 |
aatgttggcatcctgcaacctgaaaactttcccta |
5539864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 5848351 - 5848538
Alignment:
| Q |
1 |
ccttttccaacatctatcttccagctccgttcactttctttcctttctctttcctataataggttgaatgggtcactacaactagatgagcttttgaagc |
100 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| |||||| |||||| | ||||||||||||||||||| | || ||||||||||||||| ||| |
|
|
| T |
5848351 |
ccttttccaacatctctcttccagttccgttcactttttttcctcgatctttcatctaataggttgaatgggtcaatgcagctagatgagcttttggagc |
5848450 |
T |
|
| Q |
101 |
ttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttgccaa |
188 |
Q |
| |
|
|||| |||||| | ||| |||||||||||||||||||||||| | |||||||||||||| || ||||||||| |||||| |||| |
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|
| T |
5848451 |
ttagaaatttaactgacctaaccctttcatacaacaacatatcaatcattgagaatgatgcaagtgttgatcagacagcctttcccaa |
5848538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 5558842 - 5558612
Alignment:
| Q |
5 |
ttccaacatctatcttccagctccgttcactttctttcctttctctttcctataataggttgaatgggtcactacaactagatgagcttttgaagcttag |
104 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||| |||| |||||||| ||| ||||||||||||||||| || |||||| | |||||| ||||||| |
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|
| T |
5558842 |
ttccaacatctatcttcctgcttcgttcactttctgtcctcgatctttcctctaacaggttgaatgggtcactgcatctagataaacttttggagcttag |
5558743 |
T |
|
| Q |
105 |
taatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttgccaattttgaatatcttcat |
204 |
Q |
| |
|
|||||| | |||| |||||||||| |||||||||||||| |||| | ||||||||||| |||||| ||| |||| |||| ||| | ||| | |
|
|
| T |
5558742 |
aaatttaactgcactaaacctttcatataacaacatatcaatcaatgtaagtgatgcaaatgttgatcatactttctttcccaaatttacacgtctagaa |
5558643 |
T |
|
| Q |
205 |
ttggcatcctgcaacctgaaaacttttccta |
235 |
Q |
| |
|
|||||| |||||||| |||||||||| |||| |
|
|
| T |
5558642 |
ttggcaacctgcaacttgaaaactttcccta |
5558612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 5571493 - 5571727
Alignment:
| Q |
1 |
ccttttccaacatctatcttccagctccgttcactttctttcctttctctttcctataataggttgaatgggtcactacaactagatgagcttttgaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | ||||||| | |||| ||||||| ||| ||||||||||| | | || ||||||||||||||| ||| |
|
|
| T |
5571493 |
ccttttccaacatctatcttccagttcagatcactttatgtcctcgatctttccattaacaggttgaatggttgggtgcagctagatgagcttttggagc |
5571592 |
T |
|
| Q |
101 |
ttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttgccaattttgaata-tc |
199 |
Q |
| |
|
| |||| |||| | ||||||||||||||||||||||||||||| |||| ||||| || |||||||||||| ||| | ||| ||||| || | || | |
|
|
| T |
5571593 |
taagtagtttaactgccctagacctttcatacaacaacatatcaatcaatgtgaatgttgaaaatgctgatcatacttcgttttccaatatt-agtactt |
5571691 |
T |
|
| Q |
200 |
ttcatttggcatcctgcaacctgaaaacttttccta |
235 |
Q |
| |
|
| | |||||||||||||||||||||||||| |||| |
|
|
| T |
5571692 |
taaagttggcatcctgcaacctgaaaactttcccta |
5571727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 235
Target Start/End: Original strand, 5583747 - 5583934
Alignment:
| Q |
48 |
tctttcctataataggttgaatgggtcactacaactagatgagcttttgaagcttagtaatttattaggactagacctttcatacaacaacatatcaata |
147 |
Q |
| |
|
|||||||| ||| |||||||||||||| || || |||||||||||| || ||||||| |||||| |||||||||||||||||||||||||||| || |
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|
| T |
5583747 |
tctttcctttaacaggttgaatgggtcgctgcagctagatgagcttatggagcttagagatttatctacactagacctttcatacaacaacatatcagta |
5583846 |
T |
|
| Q |
148 |
aatgagaatgatgcaaatgctgatcagactgcctttgccaat-tttgaatatcttcatttggcatcctgcaacctgaaaacttttccta |
235 |
Q |
| |
|
|||| |||| | ||||| || || | ||| ||||| ||||| || | | | || ||||||||||||||||||||||||||| |||| |
|
|
| T |
5583847 |
aatgtaaatgtttcaaatcctaattatacttcctttcccaatattagcaca-ctcattttggcatcctgcaacctgaaaactttcccta |
5583934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 5605206 - 5605135
Alignment:
| Q |
118 |
ctagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttgccaat |
189 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| |||||||||||||| |||||||| | ||||| ||||| |
|
|
| T |
5605206 |
ctagacctttcatacaacaacatgtcaatcaatgggaatgatgcaaatgttgatcagatttcctttcccaat |
5605135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 5564521 - 5564465
Alignment:
| Q |
117 |
actagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatca |
173 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| ||||| ||| |||| |||||| |
|
|
| T |
5564521 |
actaaacctttcatacaacaacatatcaattaatgggaatgttgctaatgttgatca |
5564465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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