View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7420_high_1 (Length: 430)
Name: NF7420_high_1
Description: NF7420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7420_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 39 - 408
Target Start/End: Original strand, 37504354 - 37504725
Alignment:
| Q |
39 |
atggacatcaaacaataccggcgtgtttcttctatcgcgagtatggttatgtcttcttgattgatagttccttatggatatgaaaaagaagaagaaaagc |
138 |
Q |
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| T |
37504354 |
atggacatcaaacaataccggcgtgtttcttctatcgcgagtatggttatgtcttcttgattgatagttccttatggatatgaaaaagaagaagaaaagc |
37504453 |
T |
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| Q |
139 |
ataaccgtagtaacaaagcaagccatggccatcatagctatacgaagtgtgtggatatcatggatatggaaatgatgaagtatgttatagggagtgtatg |
238 |
Q |
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| T |
37504454 |
ataatcgtagtaacaaagcaagccatggccatcatagctatacgaagtgtgtggatatcatggatatggaaatgatgaagtatgttatagggagtgtatg |
37504553 |
T |
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| Q |
239 |
taacaggtgattgttgaggagaagggtttgggctatcatggtaatagaaatgaaggagatttctaagatgaaaaaccattgatgaaagaaagagggtagt |
338 |
Q |
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| T |
37504554 |
taacaggtgattgttgaggagaagggtttgggctatcatggtaatagaaatgaaggagatttctaagatgaaaaaccattgatgaaagaaagagggtagt |
37504653 |
T |
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| Q |
339 |
gaaatttgatt--gagagaatgttagagataagagtgtacatggaagattgtggagatttttgtttgttttt |
408 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37504654 |
gagatttgattgagagagaatgttagagataagagtgtacatggaagattgtggagatttttgtttgttttt |
37504725 |
T |
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