View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7420_high_4 (Length: 307)
Name: NF7420_high_4
Description: NF7420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7420_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 19822376 - 19822088
Alignment:
| Q |
1 |
aaatcagacaaaaattaatcaaaagcatattttacacatcaaagtcactatttataaaattaattgaagtaaacacgtatgttcttataatnnnnnnnnt |
100 |
Q |
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| T |
19822376 |
aaatcagacaaaaattaatcaaaagcatattttacacatcaaagtcactatttataaaattaattgaagtaaacacgtatgttcttataataaaaaaaat |
19822277 |
T |
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| Q |
101 |
gaaataaataaacggttcagaattgtattacccttgcaatcatggatatcccctcattgctataacggttttttcaaattttaaaagagagtgtaggaaa |
200 |
Q |
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| T |
19822276 |
gaaataaataaacggtttagaattgtattacccatgcaatcatggatatcccctcattgctataacggttttttcaaattttaaaagagagtgtaggaaa |
19822177 |
T |
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| Q |
201 |
aagtagaaaccaaataatgcttttcaaattaatccatagctaataaaacctcatccaaatattcttttagtttgaatcagccttttagt |
289 |
Q |
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| T |
19822176 |
aagtagaaaccaaataatgcttttcaaattaatacatagctaataaaacctcatccaaatattcttttagtttgaatcagccttttagt |
19822088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 2973043 - 2972981
Alignment:
| Q |
211 |
caaataatgcttttcaaattaatccatagctaataaaacctcatccaaatattcttttagttt |
273 |
Q |
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||||||||||||||||||||| ||||||||| | |||||| |||| |||||| |||| |||| |
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| T |
2973043 |
caaataatgcttttcaaattagtccatagctgagaaaaccccatcttaatattgttttggttt |
2972981 |
T |
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