View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7420_high_7 (Length: 216)

Name: NF7420_high_7
Description: NF7420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7420_high_7
NF7420_high_7
[»] chr8 (5 HSPs)
chr8 (1-200)||(44122531-44122733)
chr8 (128-196)||(44143300-44143368)
chr8 (26-88)||(24197831-24197893)
chr8 (24-88)||(32778559-32778623)
chr8 (24-81)||(39709634-39709691)
[»] chr2 (4 HSPs)
chr2 (22-88)||(816405-816471)
chr2 (24-88)||(39417503-39417567)
chr2 (24-88)||(18741401-18741465)
chr2 (24-88)||(22999136-22999200)
[»] scaffold0160 (1 HSPs)
scaffold0160 (24-88)||(22143-22207)
[»] chr4 (3 HSPs)
chr4 (24-88)||(24478456-24478520)
chr4 (23-89)||(38944383-38944449)
chr4 (42-88)||(50981733-50981779)
[»] chr1 (2 HSPs)
chr1 (24-88)||(37186820-37186884)
chr1 (24-88)||(35068935-35068999)
[»] chr3 (3 HSPs)
chr3 (25-88)||(4659600-4659663)
chr3 (36-88)||(50735880-50735932)
chr3 (36-88)||(50776923-50776975)
[»] chr7 (3 HSPs)
chr7 (24-82)||(6328183-6328241)
chr7 (42-88)||(36251729-36251775)
chr7 (24-88)||(4887517-4887580)
[»] chr5 (2 HSPs)
chr5 (42-88)||(24406642-24406688)
chr5 (24-88)||(10083932-10083996)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 44122733 - 44122531
Alignment:
Q  1 attattatgttgaacgtcatgat---ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctattnnnnnnnn 97  Q
    ||||||||| |||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||            
T  44122733 attattatgctgaacgtcatgattagggttcgaactctgatacctccactttatgtgtgtaagtttatgctggctttgacatctcgtctattaaaaaaaa 44122634  T
Q  98 gttgtaccattgaagcaaaacatgaatgtggttctttaagataacgtggcaatgtagactccactaaactatacatttgggttgcaccattgaaggtgct 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44122633 gttgtaccattgaagcaaaacatgaatgtggttctttaagataacgtggcaatgtagactccactaaactatacatttgggttgcaccattgaaggtgct 44122534  T
Q  198 caa 200  Q
    |||    
T  44122533 caa 44122531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 44143368 - 44143300
Alignment:
Q  128 gttctttaagataacgtggcaatgtagactccactaaactatacatttgggttgcaccattgaaggtgc 196  Q
    |||||||||||| | ||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  44143368 gttctttaagatgatgtggcaatgtagactccactaagagatacatttgggttgcaccattgaaggtgc 44143300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 24197893 - 24197831
Alignment:
Q  26 ttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    ||||||||| ||||| |||||||||||||||| |||||||| ||| |||| |||||| |||||    
T  24197893 ttcgaactccgatacctccactttatgtgtgtgagtttatgatggttttgtcatctcttctat 24197831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 32778559 - 32778623
Alignment:
Q  24 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    |||| |||||| ||||| |||||||| |||||||  ||||||| |||||||| ||||||||||||    
T  32778559 ggtttgaactccgatacctccactttgtgtgtgtgggtttatgatggctttgtcatctcgtctat 32778623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 39709691 - 39709634
Alignment:
Q  24 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatct 81  Q
    ||||| ||||||||||| |||||||||| ||||| |||||||| ||| |||| |||||    
T  39709691 ggttcaaactctgatacctccactttatatgtgtgagtttatgatggttttgccatct 39709634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 816405 - 816471
Alignment:
Q  22 atggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    ||||||||||| | | |||||||||||| ||||||| |||||||| ||| |||| ||||||||||||    
T  816405 atggttcgaaccccggtacatccactttgtgtgtgtgagtttatgatggttttgccatctcgtctat 816471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 39417503 - 39417567
Alignment:
Q  24 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    ||||||||||| ||||  |||||||||||||||| |||||||| || ||||  ||||||||||||    
T  39417503 ggttcgaactccgatatctccactttatgtgtgtgagtttatgatgactttatcatctcgtctat 39417567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 18741465 - 18741401
Alignment:
Q  24 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    ||||| ||||| | ||| |||||||| ||||||| |||||||| || ||||| ||||||||||||    
T  18741465 ggttcaaactccggtacctccactttgtgtgtgtgagtttatgatgactttgtcatctcgtctat 18741401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 22999136 - 22999200
Alignment:
Q  24 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    ||||||||| | || || |||||||| ||||||| |||||||| ||| |||| ||||||||||||    
T  22999136 ggttcgaaccccgacacctccactttgtgtgtgtgagtttatgatggttttgtcatctcgtctat 22999200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 22143 - 22207
Alignment:
Q  24 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    ||||||||| | ||||| |||||||| ||||||| |||||||| || ||||| ||||||||||||    
T  22143 ggttcgaaccccgatacctccactttgtgtgtgtgagtttatgatgactttgtcatctcgtctat 22207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 24478520 - 24478456
Alignment:
Q  24 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    ||||||||||||||||| |||||||||| |||||  ||||||| ||| |||| |||||| |||||    
T  24478520 ggttcgaactctgatacctccactttatatgtgtgggtttatgatggttttgtcatctcctctat 24478456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 38944449 - 38944383
Alignment:
Q  23 tggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctatt 89  Q
    |||||||||| |  |||| |||||||||||| ||| |||||||| ||| |||| |||||||||||||    
T  38944449 tggttcgaaccccaatacctccactttatgtatgtgagtttatgatggttttgtcatctcgtctatt 38944383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 50981779 - 50981733
Alignment:
Q  42 tccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    |||||||| ||||||| |||||||| ||||||||||||||| |||||    
T  50981779 tccactttgtgtgtgtgagtttatgatggctttgacatctcttctat 50981733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 37186884 - 37186820
Alignment:
Q  24 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    ||||||||||||| ||| |||||||| ||||| | |||||||| |||||||| |||||| |||||    
T  37186884 ggttcgaactctggtacctccactttgtgtgtttgagtttatgatggctttgtcatctcttctat 37186820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 35068935 - 35068999
Alignment:
Q  24 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    |||||||| ||  |||| |||||||| ||||||| ||||||||  ||||||| ||||||||||||    
T  35068935 ggttcgaattccaatacctccactttgtgtgtgtgagtttatgacggctttgccatctcgtctat 35068999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 4659600 - 4659663
Alignment:
Q  25 gttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    |||||||| ||||||| |||||||||||||||| |||||||  || ||||  ||||||||||||    
T  4659600 gttcgaaccctgatacctccactttatgtgtgtgagtttataatgactttttcatctcgtctat 4659663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 50735880 - 50735932
Alignment:
Q  36 gatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    ||||| |||| |||||||||||||||||| | || ||||| ||||||||||||    
T  50735880 gatacctccattttatgtgtgtaagtttacgatgactttgtcatctcgtctat 50735932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 50776975 - 50776923
Alignment:
Q  36 gatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    ||||| |||| |||||||||||||||||| | || ||||| ||||||||||||    
T  50776975 gatacctccattttatgtgtgtaagtttacgatgactttgtcatctcgtctat 50776923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 6328241 - 6328183
Alignment:
Q  24 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctc 82  Q
    ||||||||| | ||||| |||||||||||||||| |||||||| ||| |||| ||||||    
T  6328241 ggttcgaaccccgatacctccactttatgtgtgtgagtttatgatggttttgtcatctc 6328183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 36251729 - 36251775
Alignment:
Q  42 tccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    |||||||||||||||| |||||||| ||| |||| ||||||||||||    
T  36251729 tccactttatgtgtgtgagtttatgatggttttgccatctcgtctat 36251775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 4887580 - 4887517
Alignment:
Q  24 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    ||||||||| ||||||||||||| || ||||||| |||||||  |||||||| ||| ||||||||    
T  4887580 ggttcgaaccctgatacatccac-ttgtgtgtgtgagtttataatggctttgccatttcgtctat 4887517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 24406642 - 24406688
Alignment:
Q  42 tccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    |||||||| |||||||| ||||||| |||||||| ||||||||||||    
T  24406642 tccactttgtgtgtgtatgtttatgatggctttgccatctcgtctat 24406688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 10083996 - 10083932
Alignment:
Q  24 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 88  Q
    ||||||||||| | ||  |||||||| |||||||||||||||| || ||||| | ||||||||||    
T  10083996 ggttcgaactccggtagctccactttgtgtgtgtaagtttatgatgactttgccctctcgtctat 10083932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University