View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7420_low_1 (Length: 896)

Name: NF7420_low_1
Description: NF7420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7420_low_1
NF7420_low_1
[»] chr3 (6 HSPs)
chr3 (411-896)||(31423810-31424288)
chr3 (8-177)||(31421158-31421327)
chr3 (571-787)||(24712244-24712462)
chr3 (789-890)||(24712584-24712684)
chr3 (295-326)||(31423694-31423725)
chr3 (831-892)||(24099360-24099421)
[»] chr8 (6 HSPs)
chr8 (515-745)||(31503540-31503772)
chr8 (575-672)||(3679052-3679149)
chr8 (684-782)||(17820059-17820158)
chr8 (804-895)||(3679406-3679497)
chr8 (804-850)||(17819879-17819925)
chr8 (807-896)||(30236157-30236246)
[»] chr6 (4 HSPs)
chr6 (650-745)||(5746424-5746519)
chr6 (831-896)||(34105400-34105465)
chr6 (789-850)||(15487622-15487682)
chr6 (855-896)||(32935368-32935409)
[»] chr4 (2 HSPs)
chr4 (828-896)||(39041303-39041371)
chr4 (789-895)||(6599975-6600081)
[»] chr2 (3 HSPs)
chr2 (789-896)||(23650331-23650437)
chr2 (855-896)||(31902443-31902484)
chr2 (855-896)||(39338894-39338935)
[»] chr7 (3 HSPs)
chr7 (571-617)||(26386589-26386635)
chr7 (821-896)||(34389939-34390014)
chr7 (802-887)||(43344918-43345003)
[»] chr5 (2 HSPs)
chr5 (570-612)||(25658554-25658596)
chr5 (855-896)||(25992018-25992059)
[»] scaffold0620 (1 HSPs)
scaffold0620 (831-896)||(3817-3882)
[»] chr1 (3 HSPs)
chr1 (818-896)||(24658903-24658981)
chr1 (855-896)||(38544767-38544808)
chr1 (855-896)||(46603403-46603444)
[»] scaffold1613 (1 HSPs)
scaffold1613 (855-896)||(1046-1087)


Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 411 - 896
Target Start/End: Original strand, 31423810 - 31424288
Alignment:
Q  411 tcacgttggttttgtgtggttgtttggtgtggtactgttagcggtggagcgagatggttgcgtaggtttgtgtagttgtgtgtgatggtttgtagcgttc 510  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  31423810 tcacgttggttttgtgtggttgtttggtgtggtactgttagcagtggagcgagatggttgtgtaggtttgtgtagtggtgtgtgatggtttgtagcgttc 31423909  T
Q  511 ggatggggtggtcgtggataattttgactccgatttggcattgatacgattgatagacaagagctgattaagtgggggtggttgatgttgtttaggtagg 610  Q
    |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31423910 ggatggggtgattgtggataatttggactccgatttggcattgatacgattgatagacaagagctgattaagtgggggtggttgatgttgtttaggtagg 31424009  T
Q  611 gaggtggatgttttttggtgttttggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccgtcgtcgctagct 710  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31424010 gaggtggatgtttttt-------tggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccatcgtcgctagct 31424102  T
Q  711 cttggtgccttttggttgttttgtgtatgggtgcttgagtctgggtggttttgagttgagccttttccttttctgatgttggctagtcttcgtgtcttct 810  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31424103 cttggtgccttttggttgttttgtgtatgggtgcttgagtctgggtggttttgagttgagccttttccttttctgatgttggctagtcttcgtgtcttct 31424202  T
Q  811 ccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtca 896  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31424203 ccggttgatcgggggtgaggggtgccttactgatttgttttcagagtctggtaggccggtcgcttttgattcgagatcgggagtca 31424288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 31421158 - 31421327
Alignment:
Q  8 tggtgttgtggtggtttcttcttcttctattggttcttttccttgatggtttcaatgttttcgatccggtcccgttttagtttgtcccaatctgttccag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31421158 tggtgttgtggtggtttcttcttcttctattggttcttttccttgagggtttcaatgttttcgatccggtcccgttttagtttgtcccgatctgttccag 31421257  T
Q  108 atctgactgctacgccgtacacggctgtctgctacgccggagacctctctctgttgctattcacgttttt 177  Q
    || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31421258 atttgactgctacaccgtacacggctgtctgctacgccggagacctctctctgttgctattcacgttttt 31421327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 571 - 787
Target Start/End: Original strand, 24712244 - 24712462
Alignment:
Q  571 gagctgattaagtgggggtggttgatgttgtttaggtagggaggtggatgtttt-ttggtgttttggtggatggtagtgtactcttggtgtttctgttgt 669  Q
    ||||||||||||||||| |||| || ||| |||||||||||||||||||||||| |||||||| | |||| ||||||||  |||||||||||||||||||    
T  24712244 gagctgattaagtgggg-tggtagacgttttttaggtagggaggtggatgttttattggtgttgttgtgggtggtagtgagctcttggtgtttctgttgt 24712342  T
Q  670 aggctgcctttg-tcttgggtctgtatccgtcgtcgctagctcttggtgccttttggttg-ttttgtgtatgggtgcttgagtctgggtggtttt-gagt 766  Q
    |||||||||||| | |||||||  ||||||||||||||||||||||||| ||||| |||| |||||||| ||| |||||||||  |||||||||| |||     
T  24712343 aggctgcctttgtttttgggtccatatccgtcgtcgctagctcttggtg-cttttagttgattttgtgtttggttgcttgagtgcgggtggttttcgagc 24712441  T
Q  767 tgagccttttccttttctgat 787  Q
    |||||||||||||| ||||||    
T  24712442 tgagccttttccttctctgat 24712462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 789 - 890
Target Start/End: Original strand, 24712584 - 24712684
Alignment:
Q  789 ttggctagtcttcgtgtcttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatc 888  Q
    |||||| ||| | ||||||||||||||||||||||| |||| ||||||||||||||||||||   |||| |||| |||| |||  |||| ||||||||||    
T  24712584 ttggctggtcatggtgtcttctccggttgatcgggg-tgaggggtgccttactgatttgtttctggagtatggtgggccggtcattttttattcgagatc 24712682  T
Q  889 gg 890  Q
    ||    
T  24712683 gg 24712684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 326
Target Start/End: Original strand, 31423694 - 31423725
Alignment:
Q  295 agagagggtgccgtcagcgggaacaacagaga 326  Q
    ||||||||||||||||||||||||||||||||    
T  31423694 agagagggtgccgtcagcgggaacaacagaga 31423725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 831 - 892
Target Start/End: Complemental strand, 24099421 - 24099360
Alignment:
Q  831 ggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcggga 892  Q
    ||||||||| ||||||||||  |||||||||| ||||  || |||||||||||| |||||||    
T  24099421 ggtgccttaatgatttgtttatagagtctggtgggccgatcacttttgattcgatatcggga 24099360  T

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Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 515 - 745
Target Start/End: Complemental strand, 31503772 - 31503540
Alignment:
Q  515 ggggtggtcgtggataattttgactccgatttggcattgatacgattgatagacaagagctgattaagtgggggtggttgatgttgtttaggtagggagg 614  Q
    |||||||||||||||||| | ||||| ||| ||   | || ||  ||||| ||| ||||||||||||  |||| |||| ||  ||| ||||||||| |||    
T  31503772 ggggtggtcgtggataatctagactcagatctgaagtcgaaacatttgatggacgagagctgattaacaggggatggtagacattggttaggtaggaagg 31503673  T
Q  615 tggatgttttt-tggtgttttggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccgtcgtcgctagctctt 713  Q
    ||||||||||| ||||||||||||||||||| |||  |||| | ||||||| ||||  || |||| ||| ||| |||  |||||| | ||||||||||||    
T  31503672 tggatgtttttatggtgttttggtggatggtggtgagctctagatgtttctattgtttgccgcctctgttttgagtccatatccgccatcgctagctctt 31503573  T
Q  714 ggtgccttttggttg-ttttgtgtatgggtgct 745  Q
    | ||| ||||||||| |||||| | ||||||||    
T  31503572 gttgcattttggttgcttttgtatttgggtgct 31503540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 575 - 672
Target Start/End: Original strand, 3679052 - 3679149
Alignment:
Q  575 tgattaagtgggggtggttgatgttgtttaggtagggaggtggatgttttttggtgttttggtggatggtagtgtactcttggtgtttctgttgtagg 672  Q
    |||||||| ||||||||| || |||||||||||||||||||| ||||||  || |||||| |||| |||| |||  || |||||||||||||||||||    
T  3679052 tgattaagagggggtggtagacgttgtttaggtagggaggtgaatgtttaatgatgtttttgtgggtggtggtgagctattggtgtttctgttgtagg 3679149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 684 - 782
Target Start/End: Complemental strand, 17820158 - 17820059
Alignment:
Q  684 ttgggtctgtatccgtcgtcgctagctcttggtgccttttggttg-ttttgtgtatgggtgcttgagtctgggtggtttt-gagttgagccttttccttt 781  Q
    |||||||  |||| |||||||||| |||||||||| ||||||||| |||||||| |||| |||||||| ||||||||||| ||| | |||||||||||||    
T  17820158 ttgggtccatatctgtcgtcgctaactcttggtgc-ttttggttgattttgtgtttgggagcttgagtgtgggtggttttcgagcttagccttttccttt 17820060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 804 - 895
Target Start/End: Original strand, 3679406 - 3679497
Alignment:
Q  804 gtcttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtc 895  Q
    |||||||||||||||||| ||||||| ||| | ||||||||||||||  |||||||    |||   || |||||||||||||||||||||||    
T  3679406 gtcttctccggttgatcgagggtgaggggtactttactgatttgtttctagagtctaactggcttatcacttttgattcgagatcgggagtc 3679497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 804 - 850
Target Start/End: Complemental strand, 17819925 - 17819879
Alignment:
Q  804 gtcttctccggttgatcgggggtgagaggtgccttactgatttgttt 850  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  17819925 gtcttctccggtagattgggggtgaggggtgccttactgatttgttt 17819879  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 896
Target Start/End: Complemental strand, 30236246 - 30236157
Alignment:
Q  807 ttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtca 896  Q
    ||||| ||| || ||||||| || |||||| | |||||||| |||   |||||||| || |  |||||||||||||||||||||||||||    
T  30236246 ttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtgggacgatcgcttttgattcgagatcgggagtca 30236157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 650 - 745
Target Start/End: Original strand, 5746424 - 5746519
Alignment:
Q  650 actcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccgtcgtcgctagctcttggtgccttttggttgttttgtgtatgggtgct 745  Q
    |||||| ||||||||||||| |   |||||||| |||| ||  |||||||||||||||||||||| ||| ||| ||||| ||||||| ||||||||    
T  5746424 actctttgtgtttctgttgttgatcgcctttgtgttggatccatatccgtcgtcgctagctcttgttgcgtttgggttgctttgtgtttgggtgct 5746519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 831 - 896
Target Start/End: Original strand, 34105400 - 34105465
Alignment:
Q  831 ggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtca 896  Q
    ||||||||| ||||||||||  ||||| |||| ||||  || ||||||||||||||||||||||||    
T  34105400 ggtgccttagtgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagtca 34105465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 789 - 850
Target Start/End: Original strand, 15487622 - 15487682
Alignment:
Q  789 ttggctagtcttcgtgtcttctccggttgatcgggggtgagaggtgccttactgatttgttt 850  Q
    |||||| ||| | |||||||||| ||||||||||||||| ||||| ||||| ||||||||||    
T  15487622 ttggctggtcatggtgtcttctctggttgatcgggggtg-gaggtaccttattgatttgttt 15487682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 855 - 896
Target Start/End: Complemental strand, 32935409 - 32935368
Alignment:
Q  855 agtctggtaggccagtcgcttttgattcgagatcgggagtca 896  Q
    |||||||| ||||  |||||||||||||||||||||||||||    
T  32935409 agtctggtgggccgatcgcttttgattcgagatcgggagtca 32935368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 828 - 896
Target Start/End: Complemental strand, 39041371 - 39041303
Alignment:
Q  828 agaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtca 896  Q
    |||| ||||||| |||||||||| ||||||||||| ||||  || |||||||||||||||| |||||||    
T  39041371 agagatgccttaatgatttgtttacagagtctggtgggccgatcacttttgattcgagatcaggagtca 39041303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 789 - 895
Target Start/End: Complemental strand, 6600081 - 6599975
Alignment:
Q  789 ttggctagtcttcgtgtcttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatc 888  Q
    |||||||||  | ||||||||| |||| ||||| | |||||  |  |||||||||||||  |  |||||||||| ||||  |||||||||||| ||||||    
T  6600081 ttggctagttatggtgtcttcttcggtggatcgagcgtgaggaggaccttactgatttggctctagagtctggtgggccgatcgcttttgattagagatc 6599982  T
Q  889 gggagtc 895  Q
    |||||||    
T  6599981 gggagtc 6599975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 789 - 896
Target Start/End: Original strand, 23650331 - 23650437
Alignment:
Q  789 ttggctagtcttcgtgtcttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatc 888  Q
    |||||||||  | |||||||||  ||| |||||||| |||| ||| ||||||| ||||| ||  |||||||||| |||   |||||||||||||||||||    
T  23650331 ttggctagttatggtgtcttcttaggtggatcgggg-tgaggggtaccttacttatttggttctagagtctggtgggctgatcgcttttgattcgagatc 23650429  T
Q  889 gggagtca 896  Q
    ||||||||    
T  23650430 gggagtca 23650437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 855 - 896
Target Start/End: Complemental strand, 31902484 - 31902443
Alignment:
Q  855 agtctggtaggccagtcgcttttgattcgagatcgggagtca 896  Q
    |||||||| ||||| |||||||| ||||||||||||||||||    
T  31902484 agtctggtgggccaatcgcttttaattcgagatcgggagtca 31902443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 855 - 896
Target Start/End: Complemental strand, 39338935 - 39338894
Alignment:
Q  855 agtctggtaggccagtcgcttttgattcgagatcgggagtca 896  Q
    |||||||| ||||  |||||||||||||||||||||||||||    
T  39338935 agtctggtgggccgatcgcttttgattcgagatcgggagtca 39338894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 571 - 617
Target Start/End: Complemental strand, 26386635 - 26386589
Alignment:
Q  571 gagctgattaagtgggggtggttgatgttgtttaggtagggaggtgg 617  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  26386635 gagctgattaagagggggtggtagatgttgtttaggtaaggaggtgg 26386589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 821 - 896
Target Start/End: Original strand, 34389939 - 34390014
Alignment:
Q  821 gggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtca 896  Q
    |||||||||  ||||| | |||||||| ||| | |||||||| ||||  || ||||||||||||||||||||||||    
T  34389939 gggggtgaggagtgccctgctgatttggttttaaagtctggtgggccgatcacttttgattcgagatcgggagtca 34390014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 802 - 887
Target Start/End: Complemental strand, 43345003 - 43344918
Alignment:
Q  802 gtgtcttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagat 887  Q
    ||||||||| |||| |||||||| |||| ||| ||||| ||||||  ||  |||||||||| | || ||||||||||||| |||||    
T  43345003 gtgtcttcttcggtggatcggggatgaggggtaccttattgatttcgttatagagtctggtggaccggtcgcttttgatttgagat 43344918  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 570 - 612
Target Start/End: Complemental strand, 25658596 - 25658554
Alignment:
Q  570 agagctgattaagtgggggtggttgatgttgtttaggtaggga 612  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  25658596 agagctgattaagagggggtggttgatgttatttaggtaggga 25658554  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 855 - 896
Target Start/End: Original strand, 25992018 - 25992059
Alignment:
Q  855 agtctggtaggccagtcgcttttgattcgagatcgggagtca 896  Q
    |||||||| ||||| |||||||||||||||||||| ||||||    
T  25992018 agtctggtgggccaatcgcttttgattcgagatcgagagtca 25992059  T

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Target: scaffold0620 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 831 - 896
Target Start/End: Original strand, 3817 - 3882
Alignment:
Q  831 ggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtca 896  Q
    ||||||| | ||||||||||| |||||||||| ||||  ||  |||||||||||||||||||||||    
T  3817 ggtgcctcagtgatttgtttttagagtctggtgggccgatcaattttgattcgagatcgggagtca 3882  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 818 - 896
Target Start/End: Original strand, 24658903 - 24658981
Alignment:
Q  818 atcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtca 896  Q
    ||||||||  || |||||| | |||||||| ||  | |||||||| ||||| || ||||||||||||||||||||||||    
T  24658903 atcgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtca 24658981  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 855 - 896
Target Start/End: Complemental strand, 38544808 - 38544767
Alignment:
Q  855 agtctggtaggccagtcgcttttgattcgagatcgggagtca 896  Q
    |||||||| ||||  |||||||||||||||||||||||||||    
T  38544808 agtctggtgggccgatcgcttttgattcgagatcgggagtca 38544767  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 855 - 896
Target Start/End: Original strand, 46603403 - 46603444
Alignment:
Q  855 agtctggtaggccagtcgcttttgattcgagatcgggagtca 896  Q
    |||||||| ||||| |||||||||||||||||||| ||||||    
T  46603403 agtctggtgggccattcgcttttgattcgagatcgagagtca 46603444  T

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Target: scaffold1613 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 855 - 896
Target Start/End: Complemental strand, 1087 - 1046
Alignment:
Q  855 agtctggtaggccagtcgcttttgattcgagatcgggagtca 896  Q
    |||||||| ||||  |||||||||||||||||||||||||||    
T  1087 agtctggtgggccgatcgcttttgattcgagatcgggagtca 1046  T

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