View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7420_low_3 (Length: 350)
Name: NF7420_low_3
Description: NF7420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7420_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 33974447 - 33974761
Alignment:
| Q |
18 |
taagacatgttgttctcttgggactaagatacggatccggtacatggaaggaacttgatctgcgagtccatatgatttgtgtttcacatgcaatcaattt |
117 |
Q |
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| T |
33974447 |
taagacatgttgttttcttgggactaagatacggatccggtacatggaaggaacttgatctgcgagtccatatgatttgtgtttcacatgcaatcaattt |
33974546 |
T |
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| Q |
118 |
taattttaaattactaactagagtagtatctatcaagctaacaatgcacgtaacactacttggaggttctcacccatgtgcagtgccaacttatc--att |
215 |
Q |
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| T |
33974547 |
taattttaaattactaac-----tagtatctatcaagctaacaatgcacgtaacactacttggaggttctcacccatgtgcagtgccaacttatccaatt |
33974641 |
T |
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| Q |
216 |
aaataccgagtaattcgcaagcaatccctatatcctaaatttggtaatgatgttcaaggataagaacaaagttttctctgttgtagtccatttacaaact |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
33974642 |
aaataccgagtaattcgcaagcaatccctatatcctaaatatggtaatgatgttcaaggataataacaaagttttcgctgttgtagtccatttacaaact |
33974741 |
T |
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| Q |
316 |
catcacccaacctaaattgt |
335 |
Q |
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|||||||||||||||||||| |
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| T |
33974742 |
catcacccaacctaaattgt |
33974761 |
T |
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